메뉴 건너뛰기




Volumn 581, Issue 9, 2007, Pages 1881-1890

PRI-Modeler: Extracting RNA structural elements from PDB files of protein-RNA complexes

Author keywords

Hydrogen bond; Protein RNA interaction; van der Waals interaction; Visualization of RNA structure

Indexed keywords

AMINO ACID; NUCLEOTIDE; RNA;

EID: 34247169560     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2007.03.085     Document Type: Article
Times cited : (22)

References (15)
  • 1
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structures: Pattern recognition of hydrogen bonded and geometrical features
    • Kabsch W., and Sander C. Dictionary of protein secondary structures: Pattern recognition of hydrogen bonded and geometrical features. Biopolymers 22 (1983) 2577-2637
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 3
    • 0003055056 scopus 로고
    • Gesteland R.F., and Atkins J.F. (Eds), Cold Spring Harbor Laboratory Press
    • Tinoco Jr. In: Gesteland R.F., and Atkins J.F. (Eds). The RNA World (1993), Cold Spring Harbor Laboratory Press 603-607
    • (1993) The RNA World , pp. 603-607
    • Tinoco, Jr.1
  • 4
    • 0028304962 scopus 로고
    • Satisfying hydrogen bonding potential in proteins
    • McDonald I.K., and Thornton J.M. Satisfying hydrogen bonding potential in proteins. J. Mol. Biol. 238 (1994) 777-793
    • (1994) J. Mol. Biol. , vol.238 , pp. 777-793
    • McDonald, I.K.1    Thornton, J.M.2
  • 7
    • 0033971758 scopus 로고    scopus 로고
    • Database of non-canonical base pairs found in known RNA structures
    • Nagaswamy U., Voss N., Zhang Z., and Fox G.E. Database of non-canonical base pairs found in known RNA structures. Nucleic Acids Res. 28 (2000) 375-376
    • (2000) Nucleic Acids Res. , vol.28 , pp. 375-376
    • Nagaswamy, U.1    Voss, N.2    Zhang, Z.3    Fox, G.E.4
  • 8
    • 0034823943 scopus 로고    scopus 로고
    • Statistical analysis of atomic contacts at RNA-protein interfaces
    • Treger M., and Westhof E. Statistical analysis of atomic contacts at RNA-protein interfaces. J. Mol. Recog. 14 (2001) 199-214
    • (2001) J. Mol. Recog. , vol.14 , pp. 199-214
    • Treger, M.1    Westhof, E.2
  • 9
    • 0030297640 scopus 로고    scopus 로고
    • Protein recognition of adenylate: an example of a fuzzy recognition template
    • Moodie S.L., Mitchell J., and Thornton J. Protein recognition of adenylate: an example of a fuzzy recognition template. J. Mol. Biol. 263 (1996) 468-500
    • (1996) J. Mol. Biol. , vol.263 , pp. 468-500
    • Moodie, S.L.1    Mitchell, J.2    Thornton, J.3
  • 10
    • 0003742069 scopus 로고
    • Department of Biochemistry and Molecular Biology, University College, London
    • Hubbard S.J., and Thornton J.M. NACCESS, Computer Program (1993), Department of Biochemistry and Molecular Biology, University College, London
    • (1993) NACCESS, Computer Program
    • Hubbard, S.J.1    Thornton, J.M.2
  • 11
    • 0033832578 scopus 로고    scopus 로고
    • Phylogenetically enhanced statistical tools for RNA structure prediction
    • Akmaev V.R., Kelley S.T., and Stormo G.D. Phylogenetically enhanced statistical tools for RNA structure prediction. Bioinformatics 16 (2000) 501-512
    • (2000) Bioinformatics , vol.16 , pp. 501-512
    • Akmaev, V.R.1    Kelley, S.T.2    Stormo, G.D.3
  • 12
    • 0033862354 scopus 로고    scopus 로고
    • The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited
    • Shi H., and Moore P.B. The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited. RNA 6 (2000) 1091-1105
    • (2000) RNA , vol.6 , pp. 1091-1105
    • Shi, H.1    Moore, P.B.2
  • 13
    • 0026244229 scopus 로고
    • MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
    • Per J.K. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24 (1991) 946-950
    • (1991) J. Appl. Crystallogr. , vol.24 , pp. 946-950
    • Per, J.K.1
  • 14
    • 0033573827 scopus 로고    scopus 로고
    • Structural features of protein-nucleic acid recognition sites
    • Nadassy K., Wodak S.J., and Janin J. Structural features of protein-nucleic acid recognition sites. Biochemistry 38 (1999) 1999-2017
    • (1999) Biochemistry , vol.38 , pp. 1999-2017
    • Nadassy, K.1    Wodak, S.J.2    Janin, J.3
  • 15
    • 0035800599 scopus 로고    scopus 로고
    • Structure-based analysis of protein-RNA interactions using the Program Entangle
    • Allers J., and Shamoo Y. Structure-based analysis of protein-RNA interactions using the Program Entangle. J. Mol. Biol. 311 (2001) 75-86
    • (2001) J. Mol. Biol. , vol.311 , pp. 75-86
    • Allers, J.1    Shamoo, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.