Endoglucanases from Paenibacillus spp. form a new clan in glycoside hydrolase family 5

Journal of Biotechnology

Volumn 129, Issue 3, 2007, Pages 406-414

  Ogawa, Akinori ^a   Suzumatsu, Atsushi ^a   Takizawa, Shuichi ^a   Kubota, Hiromi ^a   Sawada, Kazuhisa ^a   Hakamada, Yoshihiro ^a   Kawai, Shuji ^a   Kobayashi, Tohru ^b   Ito, Susumu ^b,c  

^a KAO CORPORATION   (Japan)

^b JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

^c HOKKAIDO UNIVERSITY   (Japan)

Author keywords

Avicelase; Cellulase; Cloning; Endoglucanase; Glycoside hydrolase family 5; Paenibacillus

Indexed keywords

AVICELASE; ENDOGLUCANASE; GLYCOSIDE HYDROLASE FAMILY; PAENIBACILLUS;

AMINO ACIDS; CLONING; ENZYMES; PH EFFECTS; SCREENING; SOILS;

BACTERIA;

AMINO ACID; CARBOXYMETHYLCELLULOSE; CELLULOSE; GLUCAN SYNTHASE; GLYCOSIDASE; GLYCOSIDE HYDROLASE FAMILY 5; LICHENAN; MANNAN; MICROCRYSTALLINE CELLULOSE; POLYSACCHARIDE; RECOMBINANT ENZYME; UNCLASSIFIED DRUG;

ALKALINITY; AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIUM CULTURE; BACTERIUM ISOLATE; BASE PAIRING; CULTURE MEDIUM; EGL GENE; ENZYME ACTIVITY; ENZYME SYNTHESIS; GENE SEQUENCE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PAENIBACILLUS; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOIL ANALYSIS; TEMPERATURE DEPENDENCE;

AMINO ACID SEQUENCE; BACTERIA; BASE SEQUENCE; CLONING, MOLECULAR; DNA PRIMERS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GLYCOSIDE HYDROLASES; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SUBSTRATE SPECIFICITY; TEMPERATURE;

PAENIBACILLUS; PAENIBACILLUS LAUTUS;

EID: 34147191700     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2007.01.020     Document Type: Article

References (25)

1. Bok J.-D., Yernool D.A., and Eveleigh D.E. Purification, characterization, and molecular analysis of thermostable cellulases CelA and CelB from Thermotoga neapolitana. Appl. Environ. Microbiol. 64 (1998) 4774-4781
2. Cavaco-Paulo A., and Almedia L. Cellulase hydrolysis of cotton cellulose: the effects of mechanical action, enzyme concentration and dyed substrates. Biocatalysis 10 (1994) 353-360
3. Chang S., and Cohen S.N. High frequency transformation of Bacillus subtilis. Mol. Gen. Genet. 168 (1979) 111-115
4. Coutinho P.M., and Henrissat B. Carbohydrate-active enzymes: an integrated database approach. In: Gilbert H.J., Davis G.J., Henrissat B., and Svensson B. (Eds). Recent Advances in Carbohydrate Bioengineering (2000), Royal Society of Chemistry, Cambridge 3-12
5. Endo K., Hakamada Y., Takizawa S., Kubota H., Sumitomo N., Kobayashi T., and Ito S. A novel alkaline endoglucanase from an alkaliphilic Bacillus isolate: enzymatic properties, and nucleotide and deduced amino acid sequences. Appl. Microbiol. Biotechnol. 57 (2001) 109-116
6. Fukumori F., Kudo T., Narahashi Y., and Horikoshi K. Molecular cloning and nucleotide sequence of the alkaline cellulase gene from the alkalophilic Bacillus sp. strain 1139. J. Gen. Microbiol. 132 (1986) 2329-2335
7. Fukumori F., Sashihara N., Kudo T., and Horikoshi K. Nucleotide sequence of two cellulase genes from alkalophilic Bacillus sp. strain N-4 and their strong homology. J. Bacteriol. 168 (1986) 479-485
8. Fukumori F., Kudo T., Sashihara N., Nagata Y., Ito K., and Horikoshi K. The third cellulase of alkalophilic Bacillus sp. strain N-4: evolutionary relationships within the cel gene family. Gene 76 (1989) 289-298
9. Hakamada Y., Koike K., Yoshimatsu T., Mori H., Kobayashi T., and Ito S. Thermostable alkaline cellulase from an alkaliphilic isolate, Bacillus sp. KSM-S237. Extremophiles 1 (1997) 151-156
10. Hakamada Y., Hatada Y., Koike K., Yoshimatsu T., Kawai S., Kobayashi T., and Ito S. Deduced amino acid sequence and possible catalytic residues of a thermostable, alkaline cellulase from an alkaliphilic Bacillus strain. Biosci. Biotechnol. Biochem. 64 (2000) 2281-2289
11. Hakamada Y., Endo K., Takizawa S., Kobayashi T., Shirai T., Yamane T., and Ito S. Enzymatic properties, crystallization, and deduced amino acid sequence of an alkaline endoglucanase from Bacillus circulans. Biochim. Biophys. Acta 1570 (2002) 174-180
12. Hoshino E., and Ito S. Application of alkaline cellulases that contribute to soil removal in detergents. In: van Ee J.H., Misset O., and Baas E.J. (Eds). Enzymes in Detergency (1997), Dekker, New York 149-174
13. Hoshino E., Shiroishi M., Amano Y., Nomura M., and Kanda T. Synergistic actions of exo-type cellulases in the hydrolysis of cellulose with different crystallinities. J. Ferment. Bioeng. 84 (1997) 300-306
14. Hoshino E., Wada Y., and Nishizawa K. Improvements in the hygroscopic properties of cotton cellulose by treatment with an endo-type cellulase from Streptomyces sp. KSM-26. J. Biosci. Bioeng. 88 (1999) 519-525
15. Ito S. Alkaline cellulases from alkaliphilic Bacillus: enzymatic properties, genetics, and application to detergents. Extremophiles 1 (1997) 61-66
16. Ito S., Shikata S., Ozaki K., Kawai S., Okamoto K., Inoue S., Takei A., Ohta Y., and Satoh T. Alkaline cellulase for laundry detergents: production by Bacillus sp. KSM-635 and enzymatic properties. Biosci. Biotechnol. Biochem. 53 (1989) 1275-1281
17. Kottwitz B., and Upadek H. Application of cellulases that contribute to color revival and softening in detergents. In: van Ee J.H., Misset O., and Baas E.J. (Eds). Enzymes in Detergency (1997), Dekker, New York 133-148
18. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 (1970) 680-685
19. Ozaki K., Shikata S., Kawai S., Ito S., and Okamoto K. Molecular cloning and nucleotide sequence of a gene for alkaline cellulase from Bacillus sp. KSM-635. J. Gen. Microbiol. 136 (1990) 1327-1334
20. Pearson W.R., and Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. U.S.A. 85 (1988) 2444-2448
21. Saito H., and Miura K. Preparation transforming deoxyribonucleic acid by phenol treatment. Biochim. Biophys. Acta 72 (1963) 619-629
22. Saitou N., and Nei M. A neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 44 (1987) 406-425
23. Sumitomo N., Ozaki K., Kawai S., and Ito S. Nucleotide sequence of the gene for an alkaline endoglucanase from an alkaliphilic Bacillus and its expression Escherichia coli and Bacillus subtilis. Biosci. Biotechnol. Biochem. 56 (1992) 872-877
24. Thompson J.D., Higgins D.G., and Gibson T.J. Clustal W: improved the sensitivity of progressive multiple sequence alignments through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
25. Tinoco Jr. I., Borer P.N., Dengler B., Levine M.D., Uhlenbeck O.C., Crothers D.M., and Gralla J. Improved estimation of secondary structure of ribonucleic acids. Nature New Biol. 246 (1973) 40-41