Isolation and characterization of endophytic bacteria from rice root cultivated in Korea

Korean Journal of Microbiology and Biotechnology

Volumn 35, Issue 1, 2007, Pages 1-10

  Park, Soo Young ^a,b   Yang, Sung Hyun ^a,c   Choi, Soo Keun ^a   Kim, Jong Guk ^b   Park, Seung Hwan ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b Kyungpook National University   (South Korea)

^c Ocean Research and Development Institute   (South Korea)

Author keywords

Burkholderia; PGPR; Rice endophyte

Indexed keywords

FERTILIZER; RIBOSOME DNA;

ARTICLE; BACTERIAL COLONIZATION; BACTERIAL STRAIN; BACTERIUM DETECTION; BACTERIUM ISOLATION; BURKHOLDERIA; CELL SUSPENSION; CONFOCAL LASER MICROSCOPY; DNA FINGERPRINTING; DNA SEQUENCE; ENDOPHYTE; FUNGUS ISOLATION; GNOTOBIOTICS; INOCULATION; KOREA; NONHUMAN; PATHOGENICITY; PLANT LEAF; PLANT ROOT; RICE; SEEDLING; TOBACCO;

BACTERIA (MICROORGANISMS); BURKHOLDERIA; CUCUMIS SATIVUS; NICOTIANA TABACUM;

EID: 34147112752     PISSN: 1598642X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (36)

1. Alam, S., S. R. Brailsford, R. A. Whiley, and D. Beighton. 1999. PCR-Based methods for genotyping viridans group streptococci. J. Clin. Microbiol. 37: 2772-2776.
2. Barraquio, W. L., L. Revilla, and J. K. Ladha. 1997. Isolation of endophytic bacteria from wetland rice. Plant Soil. 194: 15-24.
3. Bevivino, A., S. Sarrocco, C. Dalmastri, S. Tabacchioni, C. Cantale, and L. Chiarini. 1998. Characterization of a free-living maize-rhizosphere population of Burkholderia cepacia: effect of seed treatment on disease suppression and growth promotion of maize. FEMS Microbiol. Ecol. 27: 225-237
4. Chanway, C. P. 1997. Introduction of tree roots with plant growth promoting soil bacteria: An emerging technology for reforestation. Forest Sci. 43: 99-112.
5. Cho, H. S., S. Y. Park, C. M. Ryu, J. F. Kim, J. G. Kim, and S. H. Park. 2007. Interference of quorum sensing and virulence of the rice pathogen Burkholderia glumae by an engineered endophytic bacterium. FEMS Microbiol. Ecol. 60: 14-23.
6. Choi, E. H., S. E Lee, K. S. Yoon, D. K. Kwon, J. K. Sohn, S. H. Park, M. S. Han, and S. Y. Ghim. 2003. Isolation of nitrogen-fixing bacteria from gramineous crops and measurement of nitrogenase activity. Kor. J. Microbiol. Biotechnol. 31: 18-24.
7. Cheong, H., S.-Y. Park, C-M. Ryu, J. F. Kim, S.-H. Park, and C. S. Park. 2005. Diversity of root-associated Paenibacillus spp. in winter crops from the southern part of Korea. J. Microbiol. Biotechnol. 15: 1286-1298.
8. Compant, S., B. J. Nowak, C. Clément, and E. Ait Barka. 2005. Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects. Appl. Environ. Microbiol. 71: 4951-4959.
9. Elbeltagy, A., K. Nishioka, H. Suzuki, T. Sato, Y. Sato, H. Morisaki, H. Mitsui, and K. Minamisawa. 2000. Isolation and characterization of endophytic bacteria from wild and traditionally cultivated rice varieties. Soil. Sci. Plant Nutr. 46: 617-629.
10. Elbeltagy, A., Nishioka, K., Sato, T., Suzuki, H., Ye, B., Hamada, T., Isawa, T., Mitsui, H., and Minamisawa, K. 2001. Endophytic Colonization and In Planta Nitrogen Fixation by a Herbaspirillum sp. Isolated from Wild Rice Species. Appl. Environ. Microbiol. 67: 5285-5293.
11. Engelhard, M., T. Hurek, and B. Reinhold-Hurek. 2000. Preferentila occurrence of diazotrophic endophytes, Azoarcus spp., in wild species and land races of Oryza sativa in comparison with modern races. Environ. Microbiol. 2: 131-141.
12. Estrada, P., P. Mavingui, B. Cournoyer, F. Fontaine, J. Balandreau, and J. Caballero-Mellado. (2002). A N2 fixing endophytic Burkholderia sp. associated with maize plants cultivated in Mexico. Can. J. Microbiol. 48: 285-294.
13. Fujie, T., Y. D. Huang, A. Higashitani, Y. Nishimura, S. Iyama, Y. Hirota, Y. Yoneyama, and R. A. Dixon. 1987. Effect of inoculation with Klebsiella oxytoca and Enterobacter cloacae on dinitrogen fixation by rice-bacteria associations. Plant Soil. 103: 221-226.
14. Glick, B. R. 1995. The enhancement of plant growth by free-living bacteria. Can. J. Microiol. 41: 109-117.
15. Glick, B. R. 1999. Overview of plant growth-promoting bacteria, p. 1-13. In B. R. Glick, C. L. Patten, G. Holguin, and D. M. Penrose (eds.) Biochemical and Genetic Mechanisms Used by Plant Growth Promoting Bacteria, Imperial College Press, London.
16. Gyaneshwar, P., E. K. James, N. Mathan, P. M. Reddy, B. Reinhold-Hurek, and J. K. Ladha. 2001. Endophytic colonization of rice by a diazotrophic strain of Serratia marcescens. J. Bacteriol. 183: 2634-2645.
17. Halmann, J., A. Quadt-Hallmann, and J. W. Kloepper. 1997. Bacterial endophytes in agricultural crops. Can. J. Microbiol. 43: 895-914.
18. Holmes, A., J. Govan, and R. Goldstein. 1998. Agricultural use of Burkholderia (Pseudomonas) cepacia: a threat to human health? Emerg. Infect. Dis. 4: 221-227.
19. James, E. K. 1999. Nitrogen fixation in endophytic and associative symbiosis. Field Crop Res. 65: 197-209.
20. Kloepper, J. W. and C-M. Ryu. 2006. Bacterial endophytes as elicitors of induced systemic resistance, p. 34-52. In B. Schulz, C. Boyle, and T. N. Sieber (eds.), Microbial Root Endophytes. Spring-verlag, Berlin Heidelberg.
21. Kloepper, J. W., C.-M. Ryu, and. S. Zhang. 2004. Induced systemic resistance and promotion of plant growth by Bacillus spp. Phytopathology. 94: 1259-1266.
22. Kloepper, J. W. and M. N. Schroth. 1978. Plant growth-promoting rhizobacteria on radishes, p. 879-882. In Station de pathologie vegetale et phyto-bacteriologie (ed.), Proceedings of the 4th International Conference on Plant Pathogenic Bacteria, vol. II. Gilbert-Clarey, Tours.
23. Kloepper, J. W., S. Tuzun, and J. Kuc. 1992. Proposed definitions related to induced disease resistance. Biocontrol Sci. Technol. 2: 349-351.
24. Krause, A., A. Ramakumar, D. Bartels, F. Battistoni, T. Bekel, J. Boch, M. Bohm, F. Friedrich, T. Hurek, L. Krause, B. Linke, A. C. McHardy, A. Sarkar, S. Schneiker, A. A. Syed, R. Thauer, F. J. Vorholter, S. Weidner, A. Puhler, B. Reinhold-Hurek, O. Kaiser, and A. Goesmann. 2006. Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72. Nature Biotechnol. 24: 1385-1391.
25. Ladha J. K., F. J. de Bruijn, and K. A. Malik. 1997. Assessing opportunities for nitrogen fixation in rice: a frontier project. Plant Soil. 194: 1-10.
26. Reinhold-Hurek, B. and T. Hurek. 1998. Life in grasses: diazotrophic endophytes. Trends Microbiol. 6: 139-144.
27. Reinhold-Hurek B, T. Hurek, M. Gillis, B. Hoste, M. Vancanneyt, K. Kersters, and J. De Ley. 1993. Azoarcus gen. nov., Nitrogen-fixing proteobacteria associated with roots of Kallar grass (Leptochloa fusca (L.) Kunth), and description of two species, Azoarcus indigens sp. nov. and Azoarcus communis sp. nov. Int. J. Syst. Bact. 43: 574-584.
28. Rosenblueth, M. and E. Martinez-Romero. 2006. Bacterial endophytes and their interactions with hosts. Mol. Plant Microbe Interact. 19: 827-37.
29. Ryu, C.-M., J. Kim, O. Choi, S.-Y. Park, S.-H. Park, and C. S. Park. 2005. Nature of a root-associated Paenibacillus polymyxa from field-grown winter barley in Korea. J. Microbiol. Biotechnol. 12: 984-991.
30. Ryu, C.-M., J. Kim, O. Choi, S. H. Kim, and C. S. Park. 2006. Improvement of biological control capacity of Paenibacillus polymyxa E681 by seed pelleting on sesame. Biol. Control. 39: 282-289.
31. Ryu, C.-M., J. F. Murphy, K. S. Mysore, and J. W. Kloepper. 2004. Plant growth-promoting rhizobacteria systemically protect Arabidopsis thaliana against cucumber mosaic virus by a salicylic acid and NPR1-independent and jasmonic acid-dependent signaling pathway. Plant J. 39: 381-392.
32. Ryu, C.-M., M. A, Farag, C.-H. Hu, M. S. Reddy, H. X. Wei, P. W. Paré, and J. W. Kloepper. 2003. Bacterial volatiles promote growth in Arabidopsis. Proc. Natl. Acad. Sci. USA. 100: 4927-4932.
33. Timmusk, S., B. Nicander, U. Granhall, and E. Tillberg. 1999. Cytokinin production by Paenibacillus polymyxa. Soil Biol. Biochem. 31: 1847-1852.
34. Wilmotte, A., G. Van der Auwera, and R. De Wachter. 1993. Structure of the 16S ribosomal RNA of the thermophilic cynobacterium Chlorogloeopsis HTF (Mastigocladus laminosus HTF) strain PCC7518, and phylogenetic analysis. FEBS Letters. 317: 96-100.
35. Yanni, Y. G., R. Rizk, V. Corich, A. Squattini, K. Ninke, S. Philip-Hollingsworth, G. Orgambide, F. de Bruijn, J. Stoltzfus, D. Buckley, T. Schmidt, P. Mateos, J. K. Ladha, and F. B. Dazzo. 1997. Natural endophytic association between Rhizobium leguminosarum bv. trifolii and rice roots and assessment of its potential to promote rice growth. Plant Soil. 194: 99-114.
36. Zhang, L., and G. Xie. 2007. Diversity and distribution of Burkholderia cepacia complex in the rhizosphere of rice and maize. FEMS Microbiol. Lett. 266: 231-235.