Genetic diversity of different apricot geographical groups determined by SSR markers

Genome

Volumn 46, Issue 2, 2003, Pages 244-252

  Romero, Carlos ^a   Pedryc, Andrzej ^b   Muñoz, Verónica ^a   Llácer, Gerardo ^a   Badenes, María Luisa ^a  

^a INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS IVIA   (Spain)

^b SZENT ISTVÁN UNIVERSITY   (Hungary)

Author keywords

Diversity; Microsatellites; Molecular markers; Prunus armeniaca

Indexed keywords

ALLELES; GENES, PLANT; GENETIC MARKERS; GEOGRAPHY; HETEROZYGOTE; MICROSATELLITE REPEATS; PHYLOGENY; POLYMORPHISM, GENETIC; PRUNUS; SPECIES SPECIFICITY; VARIATION (GENETICS);

ARMENIACA; EMBRYOPHYTA; PRUNUS ARMENIACA; PRUNUS PERSICA; VALENCIA;

EID: 0037572318     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g02-128     Document Type: Article

References (68)

1. Aranzana, M.J., Arús, P., Carbó, J., and King, G.J. 2001. AFLP and SSR markers for genetic diversity analysis and cultivar identification in peach (Prunus persica (L) Batsch). Acta Hort. 546: 367-370.
2. Aranzana, M.J., García-Mas, J., Carbó, J., and Arús, P. 2002. Development and variability of microsatellite markers in peach. Plant Breed. 121: 87-92.
3. Audergon, J.M. 1995. Variety and breeding. Acta Hort. 384: 35-45.
4. Badenes, M.L., Asíns, M.J., Carbonell, E.A., and Llácer, G. 1996. Genetic diversity in apricot, Prunus armeniaca, aimed at improving resistance to plum pox virus. Plant Breed. 115: 133-139.
5. Badenes, M.L., Martínez-Calvo, J., García-Carbonell, S., Villarubia, D., and Llácer, G. 1997. Descripción de variedades autóctonas valencianas de albaricoquero. Publicaciones de la Consellería de Agricultura, Pesca y Alimentación. Serie Divulgación Técnica. p. 41.
6. Badenes, M.L., Martínez-Calvo, J., and Llácer, G. 1998. Analysis of apricot germplasm from the European ecogeographical group. Euphytica, 102: 93-99.
7. Badenes, M.L., Martínez-Calvo, J., and Llácer, G. 2003. Estado actual del programa de mejora genética del albaricoquero en la Comunidad Valenciana. IV Congreso Ibérico de Ciencias Hortícolas. Cáceres, Mayo, 2001. Acta Hort. In press.
8. Bailey, C.H., and Hough, L.F. 1975. Apricots. In Advances in fruit breeding. Edited by J. Janick and J.N. Moore. Purdue University Press, West Lafayette, Ind. pp. 367-383.
9. Bassi, D., Bellini, D., Guerriero, R., Monastra, F., and Pennone, F. 1995. Apricot breeding in Italy. Acta Hort. 384: 47-54.
10. Bowers, J.E., Bandman, E.B., and Meredith, C.P. 1993. Fingerprint characterization of some wine grape cultivars. Am. J. Enol. Viticult. 44: 266-274.
11. Brooks, R.M., and Olmo, H.P. 1997. The Brooks and Olmo register of fruit and nut varieties. 3rd ed. ASHS Press, Alexandria, Va.
12. Byrne, D.H. 1990. Isozyme variability in four diploid stone fruits compared with other woody perennial plants, J. Hered. 81: 68-71.
13. Cerezo, M., Socías, R., and Arús, P. 1989. Identification of almond cultivars by pollen isoenzymes. J. Am. Soc. Hort. Sci. 114: 164-169.
14. Cipriani, G., Frazza, G., Peterlunger, E., and Testolin, R. 1994. Grapevine fingerprinting using microsatellite repeats. Vitis, 33: 211-215.
15. Cipriani, G., Lot, G., Huang, W-G., Marrazzo, M.T., Peterlunger, E., and Testolin, R. 1999. AC/GT and AG/CT microsatellite repeats in peach (Prunus persica (L.) Batsch): isolation, characterization and cross-species amplification in Prunus. Theor. Appl. Genet. 99: 65-72.
16. Cipriani, G., Marrazzo, M.T., Marconi, R., Cimato, A., and Testolin, R. 2002. Microsatellite markers isolated in olive (Olea europeaea L.) are suitable for individual fingerprinting and reveal polymorphism within ancient cultivars. Theor. Appl. Genet. 104: 223-228.
17. Crossa-Raynaud, P.H. 1960. Problems d'arboriculture fruitiere en Tunise. Abricotiers. Ann. L'Institut National de la Recherche Agronomique de Tunise 33: 39-63.
18. Della Strada, G., Pennone, F., Fideghelli, C., Monastra, F., and Cobianchi, D. 1989. Monografía di cultivar di albicocco. Ministerio dell'Agricoltura e delle Foreste. Direzione Generale della Produzione Agricola. Instituto Sperimentale per la Frutticolture, Roma, Italia.
19. De Vicente, M.C., Truco, M.J., Egea, J., Burgos, L., and Arús, P. 1998. RFLP variability in apricot (Prunus armeniaca L.). Plant Breed. 117: 153-158.
20. Dirlewanger, E., Cosson, P., Tavaud, M., Aranzana, M.J., Poizat, C., Zanetto, A., Arús, P., and Laigret, F. 2002. Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.) Theor. Appl. Genet. 105: 127-138.
21. Downey, S.L., and Iezzoni, A.F. 2000. Polymorphic DNA markers in black cherry (Prunus serotina) are identified using sequences from sweet cherry, peach and sour cherry. J. Am. Soc. Hort. Sci. 125: 76-80.
22. Doyle, J.J., and Doyle, J.L. 1987. A rapid isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
23. Edwards, A., Civitello, A., Hammond, H.A., and Caskey, C.T. 1991. DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am. J. Hum. Genet. 49: 746-756.
24. Egea, J., Burgos, L., Martínez-Gómez, P., and Dicenta, F. 1999. Apricot breeding for sharka resistance at CEBAS-CSIC, Murcia (Spain). Acta Hort. 488: 153-157.
25. Fabbri, A., Hormaza, J.L., and Polito, V.S. 1995. Random amplified polymorphic DNA analysis of olive (Olea europea L.) cultivars. J. Am. Soc. Hort. Sci. 120: 538-542.
26. FAOSTAT Agriculture Database. 2001. Available from http://apps.fao.org/page/collections?subset=agriculture.
27. Faust, M., Surányi, D., and Nyujtó, F. 1998. Origin and dissemination of apricot. Hort. Rev. 22: 225-266.
28. Gianfranceschi, L., Seglias, N., and Tarchini, R. 1998. Simple sequence repeats for the genetic analysis of apple. Theor. Appl. Genet. 96: 1069-1076.
29. Guilford, P., Prakash, S., Zhu, J.M., Rikkerink, E., Gardiner, S., Bassett, H., and Forster, R. 1997. Microsatellites in Malus x domestica (apple): abundance, polymorphism and cultivar identification. Theor. Appl. Genet. 94: 249-254.
30. Gupta, P.K., Balyan, I.S., Sharma, P.C., and Ramesh, B. 1996. Microsatellites in plants - a new class of molecular markers. Curr. Sci. 70: 45-54.
31. Hauagge, R., Kester, D.E., Aruselkar, S., Parffit, D.E., and Liu, L. 1987. Isozyme variation among California almond cultivars: II. Cultivar characterization and origins. J. Am. Soc. Hort. Sci. 112: 693-698.
32. Hormaza, J.I. 2002. Molecular characterization and similarity relationships among apricot (Prunus armeniaca L.) genotypes using simple sequence repeats. Theor. Appl. Genet. 104: 321-328.
33. Huang, W.G., Cipriani, G., Morgante, M., and Testolin, R. 1998. Microsatellite DNA in Actinidia chinensis: isolation, characterisation, and homology in related species. Theor. Appl. Genet. 97: 1269-1278.
34. Hurtado, M.A., Badenes, M., and Llácer, G. 1999. Random amplified polymorphic DNA markers as a tool for apricot cultivar identification. Acta Hort. 488: 281-287.
35. Hurtado, M.A., Westman, A., Beck, E., Abbott, A.G., Llácer, G., and Badenes, M.L. 2002. Genetic diversity in apricot cultivars based on AFLP markers. Euphytica, 127: 297-301.
36. Kijas, J.M.H., Fowler, J.C.S., and Thomas, M.R. 1995. An evaluation of sequence-tagged microsatellite site markers for genetic analysis within Citrus and related species. Genome, 38: 349-355.
37. Kloosterman, A.D., Budowle, B., and Daselaar, P. 1993. PCR-amplification and detection of the human DIS80 VNTR locus. Amplification conditions, population genetics and application in forensic analysis. Int. J. Leg. Med. 105: 257-264.
38. Koller, B., Lehman, A., McDermont, J.M., and Gessler, G. 1993. Identification of apple cultivars using RAPD markers. Theor. Appl. Genet. 85: 901-904.
39. Kostina, K.F. 1969. The use of varietal resources of apricots for breeding. Trud. Nikit. Bot. Sad. 40: 45-63.
40. Kostina, K.F. 1970. Selekcionnoe iszpolzovanie sortuv fondov abrikosa. In Abrikos. Edited by V.J. Ajzenberg. Ajastan, Yerevan, Armenia. pp. 177-189.
41. Kovalev, N.V. 1970. Ustojcivost abricosa k klajsterosporiozu v svjazi s geograficskim I geneticeskim proishozsdeniem. In Abrikos. V.J. Ajzenberg. Ajastan, Yerevan, Armenia. pp. 169-172.
42. Lapointe, F.J., and Legendre, P. 1992. Statistical significance of the matrix correlation coefficient for comparing independent phylogenetic trees. Sys. Biol. 41: 378-384.
43. Layne, R.E.C., Bailey, C.H., and Hough, L.F. 1996. Apricots. In Fruit breeding. Vol. II. Tree and tropical fruits. Edited by J. Janick and J.N. Moore. John Wiley & Sons, New York, N.Y. pp. 79-111.
44. Lu, Z.X., Reighard, G.L., Baird, W.V., Abott, A.G., and Rajapakse, S. 1996. Identification of peach rootstocks cultivars by RAPDs markers. HortScience, 31: 127-129.
45. Mantel, N.A. 1967. The detection of disease clustering and generalized regression approach. Cancer Res. 27: 209-220.
46. Mehlenbacher, S.A., Cociu, V., and Hough, L.F. 1990. Apricots (Prunus). In Genetic resources of temperate fruit and nut crops. Edited by J.N. Moorem and J.R. Ballington, Jr. International Society for Horticultural Science, Wageningen, The Netherlands. pp. 65-107.
47. Morgante, M., and Olivieri, A. 1993. PCR-amplified microsatellites as markers in plant genetics. Plant J. 3: 175-182.
48. Murray, B.W. 1996. The estimation of genetic distance and population substructure from microsatellite allele frequency data. Course notes. Department of Biology, McMaster University, Hamilton, Ont. Available from http://helix.biology.mcmaster.ca/brent/brent.html.
49. Nei, M. 1972. Genetic distance between populations. Am. Nat. 106: 283-292.
50. Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Soc. U.S.A. 70: 3321-3323.
51. Nei, M., and Li, W.H. 1979. mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U.S.A. 76: 5269-5273.
52. Nyujtó, F., and Surányi, D. 1981. Kajszibarack. Mezógazd. Kiadó, Budapest, Hungary.
53. Pérez de la Vega, M., and García, P. 2000. Análisis de la variación genética en las poblaciones. In Los marcadores genéticos en la mejora vegetal. Edited by F. Nuez and J.M. Carillo. Editorial de la Universidad Politécnica de Valencia, Valencia, Spain.
54. Rafalski, J.A., Vogel, J.M., Morgante, M., Powell, W., Andre, C., and Tingey, S.V. 1996. Generating and using DNA markers in plants. In Nonmammalian genomic analysis. A practical guide. Edited by B. Birren and E. Lai. Academic Press, San Diego, Calif. pp. 75-134.
55. Rallo, P., Dorado, G., and Martin, A. 2000. Development of simple sequence repeats (SSRs) in olive tree (Olea europaea L.). Theor. Appl. Genet. 101: 984-989.
56. Rehder, A. 1967. Manual of cultivated trees and shrubs. 2nd ed. Macmillan, New York, N.Y.
57. Rohlf, F.J. 1993. NTSYS-PC numerical taxonomy and multivariate analysis system. Version 1.8. Exeter Publications, Setauket, N.Y.
58. Roughgarden, J. 1979. Theory of population genetics and evolutionary ecology: an introduction. Prentice Hall, Upper Saddle River, N.J.
59. Russell, D. 1998. The stonefruit cultivar system (a database of worldwide stonefruit cultivars and rootstocks). Department of Primary Industries, Queensland, Australia.
60. Sosinski, B., Gannavarapu, M., Hager, L.D., Beck, L.E., King, G.J., Ryder, C.D., Rajapakse, S., Baird, W.V., Ballard, R.E., and Abbott, A.G. 2000. Characterization of microsatellite markers in peach (Prunus persica (L.) Batsch). Theor. Appl. Genet. 101: 421-428.
61. Syrgianidis, G.D., and Mainou, A.C. 1993. Deuz nouvelles varieties d'abricotier resistances à la maladie à virus de la sharka (Plum pox) issues de croissements. In Deuxièmes rencontres sur l'abricotier, Avignon, France, 27-31 May 1991. Edited by J.M. Aubergon. Commision des Communautés Européenes, Luxembourg, pp. 135-136.
62. Tautz, D. 1989. Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res. 17: 6463-6471.
63. Testolin, R., Marrazzo, T., Cipriani, G., Quarta, R., Verde, I., Dettori M.T., Pancaldi, M., and Sansavini, S. 2000. Microsatellite DNA in peach (Prunus persica L. Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome, 43: 512-520.
64. Thomas, M.R., and Scott, N.S. 1993. Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs). Theor. Appl. Genet. 86: 985-990.
65. Vavilov, N.I. 1951. Phytogeographic basis of plant breeding. The origin, variation, immunity and breeding of cultivated plants. K.S. Chester [Translated]. Chron. Boc 13: 13-54.
66. Watkins, R. 1976. Cherry, plum, peach, apricot and almond. Evolution of crop plants. Edited by N.W. Simmonds. Longman Press, New York, N.Y. pp, 242-247.
67. Wright, S. 1965. The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution, 19: 395-420.
68. Zohary, D., and Hopf, M. 1993. Domestication of plants in the Old World. 2nd ed. Oxford University Press, Oxford, U.K.