메뉴 건너뛰기




Volumn 69, Issue 2, 2007, Pages 406-410

RNA microarray for estimating relative abundance of 16S rRNA in microbial communities

Author keywords

Hybridization; Relative abundance; RNA microarray

Indexed keywords

RNA 16S;

EID: 34047256256     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2007.01.007     Document Type: Article
Times cited : (5)

References (21)
  • 1
    • 0000622269 scopus 로고
    • In situ identification of micro-organism by whole cell hybridization with rRNA-targeted nucleic probes
    • Akkerman A.D.L., van Elsas D.J., and de Bruijin F.J. (Eds), Kluwer Academic Publishers, Dordrecht
    • Amann R.I. In situ identification of micro-organism by whole cell hybridization with rRNA-targeted nucleic probes. In: Akkerman A.D.L., van Elsas D.J., and de Bruijin F.J. (Eds). Molecular Microbial Ecology Manual (1995), Kluwer Academic Publishers, Dordrecht 1-15
    • (1995) Molecular Microbial Ecology Manual , pp. 1-15
    • Amann, R.I.1
  • 2
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., and Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56 (1990) 1919-1925
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 3
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • Amann R.I., Krumholz L., and Stahl D.A. Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172 (1990) 762-770
    • (1990) J. Bacteriol. , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 6
    • 0035512205 scopus 로고    scopus 로고
    • In situ characterization of Nitrospira-like nitrite oxidizing bacteria active in wastewater treatment plants
    • Daims H., Nielsen J.L., Nielsen P.H., Schleifer K.H., and Wagner M. In situ characterization of Nitrospira-like nitrite oxidizing bacteria active in wastewater treatment plants. Appl. Environ. Microbiol. 67 (2001) 5273-5284
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5273-5284
    • Daims, H.1    Nielsen, J.L.2    Nielsen, P.H.3    Schleifer, K.H.4    Wagner, M.5
  • 7
    • 0035489394 scopus 로고    scopus 로고
    • Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris
    • Dedysh S.N., Derakshani M., and Liesack W. Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris. Appl. Environ. Microbiol. 67 (2001) 4850-4857
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4850-4857
    • Dedysh, S.N.1    Derakshani, M.2    Liesack, W.3
  • 8
    • 0024507744 scopus 로고
    • Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells
    • DeLong E.F., Wickham G.S., and Pace N.R. Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells. Science 243 (1989) 1360-1363
    • (1989) Science , vol.243 , pp. 1360-1363
    • DeLong, E.F.1    Wickham, G.S.2    Pace, N.R.3
  • 9
    • 0031789907 scopus 로고    scopus 로고
    • Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes
    • Fuchs B.M., Wallner G., Beisker W., Schwippl I., Ludwig W., and Amann R. Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 64 (1998) 4973-4982
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4973-4982
    • Fuchs, B.M.1    Wallner, G.2    Beisker, W.3    Schwippl, I.4    Ludwig, W.5    Amann, R.6
  • 10
    • 0036255104 scopus 로고    scopus 로고
    • High-sensitivity hybridization assay for quantitation of residual E. coli DNA
    • Ji X., Lee K., and DiPaolo B. High-sensitivity hybridization assay for quantitation of residual E. coli DNA. BioTechniques 32 (2002) 1162-1167
    • (2002) BioTechniques , vol.32 , pp. 1162-1167
    • Ji, X.1    Lee, K.2    DiPaolo, B.3
  • 11
    • 0035989129 scopus 로고    scopus 로고
    • The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach
    • Juretschko S., Loy A., Lehner A., and Wagner M. The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. Syst. Appl. Microbiol. 25 (2002) 84-99
    • (2002) Syst. Appl. Microbiol. , vol.25 , pp. 84-99
    • Juretschko, S.1    Loy, A.2    Lehner, A.3    Wagner, M.4
  • 12
    • 0242380174 scopus 로고    scopus 로고
    • Characterization of depth-related microbial community structure in lake sediment by denaturing gradient gel electrophoresis of amplified 16S rDNA and reversely transcribed 16S rRNA fragments
    • Koizumi Y., Kojima H., and Fukui M. Characterization of depth-related microbial community structure in lake sediment by denaturing gradient gel electrophoresis of amplified 16S rDNA and reversely transcribed 16S rRNA fragments. FEMS Microbiol. Ecol. 46 (2003) 147-157
    • (2003) FEMS Microbiol. Ecol. , vol.46 , pp. 147-157
    • Koizumi, Y.1    Kojima, H.2    Fukui, M.3
  • 13
    • 7444257667 scopus 로고    scopus 로고
    • Relationship of species-specific filament levels to filamentous bulking in activated sludge
    • Liao J., Lou I.C., and De los Reyes F.L. Relationship of species-specific filament levels to filamentous bulking in activated sludge. Appl. Environ. Microbiol. 70 (2004) 2420-2428
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2420-2428
    • Liao, J.1    Lou, I.C.2    De los Reyes, F.L.3
  • 15
    • 0036795787 scopus 로고    scopus 로고
    • Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment
    • Loy A., Lehner A., Lee N., Lee J., Adamczyk J., Meier H., Ernst J., Schleifer K.H., and Wagner M. Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl. Environ. Microbiol. 68 (2002) 5064-5081
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5064-5081
    • Loy, A.1    Lehner, A.2    Lee, N.3    Lee, J.4    Adamczyk, J.5    Meier, H.6    Ernst, J.7    Schleifer, K.H.8    Wagner, M.9
  • 16
    • 0030001221 scopus 로고    scopus 로고
    • Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria
    • Mobarry B.K., Wagner M., Urbain V., Rittmann B.E., and Stahl D.A. Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Appl. Environ. Microbiol. 62 (1996) 2156-2162
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2156-2162
    • Mobarry, B.K.1    Wagner, M.2    Urbain, V.3    Rittmann, B.E.4    Stahl, D.A.5
  • 17
    • 0028165830 scopus 로고
    • Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens
    • Raskin L., Stromley J.M., Rittmann B.E., and Stahl D.A. Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl. Environ. Microbiol. 60 (1994) 1232-1240
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1232-1240
    • Raskin, L.1    Stromley, J.M.2    Rittmann, B.E.3    Stahl, D.A.4
  • 18
    • 0030753340 scopus 로고    scopus 로고
    • Seasonal changes in the relative abundance of uncultivated sulfate-reducing bacteria in a salt marsh sediment and in the rhizosphere of Spartina alterniflora
    • Rooney-Varga, Devereux R., Evans R.S., and Hines M.E. Seasonal changes in the relative abundance of uncultivated sulfate-reducing bacteria in a salt marsh sediment and in the rhizosphere of Spartina alterniflora. Appl. Environ. Microbiol. 63 (1997) 3895-3901
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3895-3901
    • Rooney-Varga1    Devereux, R.2    Evans, R.S.3    Hines, M.E.4
  • 19
    • 0024005650 scopus 로고
    • Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology
    • Stahl D.A., Flesher B., Mansfield H.R., and Montgomery L. Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl. Environ. Microbiol. 54 (1988) 1079-1084
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 1079-1084
    • Stahl, D.A.1    Flesher, B.2    Mansfield, H.R.3    Montgomery, L.4
  • 20
    • 0037316061 scopus 로고    scopus 로고
    • Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment
    • Taroncher-Oldenburg G., Griner E.M., Francis C.A., and Ward B.B. Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment. Appl. Environ. Microbiol. 69 (2003) 1159-1171
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1159-1171
    • Taroncher-Oldenburg, G.1    Griner, E.M.2    Francis, C.A.3    Ward, B.B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.