Stick-and-diffuse and caged diffusion: A comparison of two models of synaptic vesicle dynamics

Biophysical Journal

Volumn 92, Issue 7, 2007, Pages 2271-2280

  Yeung, Chuck ^a   Shtrahman, Matthew ^b   Wu, Xiao Lun ^b  

^a BEHREND COLLEGE   (United States)

^b UNIVERSITY OF PITTSBURGH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DIFFUSION; FLUORESCENCE CORRELATION SPECTROSCOPY; HIPPOCAMPUS; MATHEMATICAL COMPUTING; MODEL; MOLECULAR DYNAMICS; NEUROSCIENCE; SIMULATION; SYNAPSE VESICLE;

EID: 34047233444     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.106.081794     Document Type: Article

References (31)

1. Magde, D., E. Elson, and W. Webb. 1972. Thermodynamic fluctuations in a reacting system - measurement by fluorescence correlation spectroscopy. Phys. Rev. Lett. 29:705-708.
2. Rigler, R., and E. Elson. 2001. Fluorescence Correlation Spectroscopy, Theory and Application. Springer-Verlag, Berlin.
3. Hess, S., S. Huang, A. Heikal, and W. Webb. 2002. Biological and chemical applications of fluorescence correlation spectroscopy: a review. Biochemistry. 41:697-705.
4. Schwille, P. 2001. Fluorescence correlation spectroscopy and its potential for intracellular applications. Cell Biochem. Biophys. 34:383-408.
5. Thompson, N., A. Lieto, and N. Allen. 2002. Recent advances in fluorescence correlation spectroscopy. Curr. Opin. Struct. Biol. 12:337-378.
6. Magde, D., E. Elson, and W. Webb. 1974. Fluorescence correlation spectroscopy. II. An experimental realization. Biopolymers. 13:29-61.
7. Ehrenberg, M., and R. Rigler. 1974. Rotational Brownian motion and fluorescence intensity fluctuations. Chem. Phys. 4:390-401.
8. Aragón, S., and R. Pecora. 1975. Fluorescence correlation spectroscopy and Brownian rotational motion. Biopolymers. 14:119-138.
9. Magde, D., and E. Elson. 1978. Fluorescence correlation spectroscopy. III. Uniform translation and laminar flow. Biopolymers. 17:361-376.
10. Widengren, J., U. Mets, and R. Rigler. 1995. Fluorescence correlation spectroscopy of triplet states in solution: a theoretical and experimental study. J. Phys. Chem. 99:13368-13379.
11. Gennerich, A., and D. Schild. 2000. Fluorescence correlation spectroscopy in small cytosolic compartments depends on the diffusion model used. Biophys. J. 79:3294-3306.
12. Jakeman, E., E. Pike, and S. Swain. 1971. Statistical accuracy in the digital autocorrelation of photon counting fluctuations. J. Phys. A. 4:517-534.
13. Schätzel, K., M. Drewel, and S. Stimac. 1989. Photon correlation measurements at large lag times: improving statistical accuracy. J. Mod. Opt. 35:711-718.
14. Saffarian, S., and E. L. Elson. 2003. Statistical analysis of fluorescence correlation spectroscopy: the standard deviation and bias. Biophys. J. 84:2030-2042.
15. Jordan, M., E. Lemke, and J. Klingauf. 2005. Visualization of synaptic vesicle movement in intact synaptic boutons. Biophys. J. 89:2091-2102.
16. Shtrahman, M., C. Yeung, D. Nauen, G. q. Bi, and X. Wu. 2005. Probing vesicle dynamics in single hippocampal synapses. Biophys. J. 89:3615-3627.
17. Lippincott-Schwartz, J., E. Snapp, and A. Kenworthy. 2001. Studying protein dynamics in living cells. Nat. Rev. Mol. Cell Biol. 2:444-456.
18. Verkman, A. 2002. Studying protein dynamics in living cells. Trends Biochem. Sci. 27:27-33.
19. Brown, F., D. Leitner, J. McCammon, and K. Wilson. 2000. Studying protein dynamics in living cells. Biophys. J. 78:2257-2269.
20. Kusumi, A., C. Nakada, K. Ritchie, K. Murase, K. Suzuki, H. Murakoshi, R. S. Kasai, J. Kondo, and T. Fujiwara. 2005. Paradigm shift of the two-dimensional continuum fluid to the partitioned fluid: high-speed single-molecule tracking of membrane molecules. Annu. Rev. Biophys. Biomol. Struct. 34:351-378.
21. Reference deleted in proof.
22. Reference deleted in proof.
23. Press, W., B. Flannery, S. Teukolsky, and W. Vetterling. 2002. Numerical Recipes. Cambridge University Press, London.
24. Sudhof, T. 1995. The synaptic vesicle cycle: a cascade of protein-protein interactions. Nature. 375:645-653.
25. Schikorski, T., and C. Stevens. 2001. Morphological correlates of functionally defined synaptic vesicle populations. Nat. Neurosci. 4:391-395.
26. Stevens, C., and J. Wesseling. 1999. Identification of a novel process limiting the rate of synaptic vesicle cycling at hippocampal synapses. Neuron. 27:539-550.
27. Morales, M., M. Colicos, and Y. Yoda. 2000. Actin-dependent regulation of neurotransmitter release at central synapses. Neuron. 27:539-550.
28. Farlow, S. 1993. PartialDifferential Equations for Scientist and Engineers. Dover, Mineola, New York.
29. Luby-Phelps, K., P. E. Castle, L. D. Taylor, and F. Lanni. 1987. Hindered diffusion of inert tracer particles in the cytoplasm of mouse 3t3 cells. Proc. Natl. Acad. Sci. USA. 84:4910-4913.
30. Holt, M., A. Cooke, A. Neef, and L. Lagnado. 2004. High mobility of vesicles supports continuous exocytosis at a ribbon synapse. Curr. Biol. 14:173-183.
31. Rea, R., J. Li, A. Dharla, E. S. Levitan, P. Sterling, and R. H. Kramer. 2004. Streamlined synaptic vesicle cycle in cone photoreceptors terminals. Neuron. 41:755-766.