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Volumn 3142, Issue , 2004, Pages 919-931

Complexity of pseudoknot prediction in simple models

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; APPROXIMATION ALGORITHMS; BIOINFORMATICS; FORECASTING; STRUCTURAL OPTIMIZATION;

EID: 34047199201     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-27836-8_77     Document Type: Article
Times cited : (42)

References (15)
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    • Joyce, G.F.1
  • 2
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    • Zuker, M., Stiegler, P.: Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Research 9 (1981) 133-148
    • (1981) Nucleic Acids Research , vol.9 , pp. 133-148
    • Zuker, M.1    Stiegler, P.2
  • 3
    • 0035312250 scopus 로고    scopus 로고
    • Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature
    • Felden, B., Massire, C., Westhof, E., Atkins, J.F., Gesteland, R.F.: Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature. Nucleic Acids Research 29 (2001) 1602-1607
    • (2001) Nucleic Acids Research , vol.29 , pp. 1602-1607
    • Felden, B.1    Massire, C.2    Westhof, E.3    Atkins, J.F.4    Gesteland, R.F.5
  • 5
    • 0031730497 scopus 로고    scopus 로고
    • An RNA folding method capable of identifying pseudoknots and base triples
    • Tabaska, J.E., Cary, R.B., Gabow, H.N., Stormo, G.D.: An RNA folding method capable of identifying pseudoknots and base triples. Bioinformatics 14 (1998) 691-699
    • (1998) Bioinformatics , vol.14 , pp. 691-699
    • Tabaska, J.E.1    Cary, R.B.2    Gabow, H.N.3    Stormo, G.D.4
  • 6
    • 0033524952 scopus 로고    scopus 로고
    • A dynamic programming algorithm for RNA structure prediction including pseudoknots
    • Rivas, E., Eddy, S.: A dynamic programming algorithm for RNA structure prediction including pseudoknots. Journal of Molecular Biology 285 (1999) 2053-2068
    • (1999) Journal of Molecular Biology , vol.285 , pp. 2053-2068
    • Rivas, E.1    Eddy, S.2
  • 7
    • 0041940818 scopus 로고    scopus 로고
    • Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots
    • Akutsu, T.: Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots. Discrete Applied Mathematics 104 (2000) 45-62
    • (2000) Discrete Applied Mathematics , vol.104 , pp. 45-62
    • Akutsu, T.1
  • 12
    • 0027932176 scopus 로고
    • Thermodynamics of folding a pseudoknotted mRNA fragment
    • Gluick, T.C., Draper, D.E.: Thermodynamics of folding a pseudoknotted mRNA fragment. Journal of Molecular Biology 241 (1994) 246-262
    • (1994) Journal of Molecular Biology , vol.241 , pp. 246-262
    • Gluick, T.C.1    Draper, D.E.2
  • 13
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews, D.H., Sabina, J., Zuker, M., Turner, D.H.: Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. Journal of Molecular Biology 288 (1999) 911-940
    • (1999) Journal of Molecular Biology , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 15
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    • A linear space algorithm for computing maximal common subsequence
    • Hirschberg, D.S.: A linear space algorithm for computing maximal common subsequence. Communications of the ACM 18 (1975) 341-343
    • (1975) Communications of the ACM , vol.18 , pp. 341-343
    • Hirschberg, D.S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.