A deformable registration method for automated morphometry of MRI brain images in neuropsychiatric research

IEEE Transactions on Medical Imaging

Volumn 26, Issue 4, 2007, Pages 452-461

  Schwarz, Daniel ^b   Kasparek, Tomas ^c   Provaznik, Ivo ^a,d   Jarkovsky, Jiri ^b  

^a IEEE

^b MASARYK UNIVERSITY   (Czech Republic)

^c UNIVERSITY HOSPITAL BRNO   (Czech Republic)

^d BRNO UNIVERSITY OF TECHNOLOGY   (Czech Republic)

Author keywords

Computational neuroanatomy; Deformable registration; First episode schizophrenia; Magnetic resonance imaging

Indexed keywords

ALGORITHMS; BRAIN; COMPUTATIONAL METHODS; MAGNETIC RESONANCE IMAGING; NEUROLOGY; PROBABILITY DISTRIBUTIONS;

COMPUTATIONAL NEUROANATOMY; DEFORMABLE REGISTRATION; FIRST-EPISODE SCHIZOPHRENIA;

IMAGE REGISTRATION;

ALGORITHM; ARTICLE; ARTIFICIAL INTELLIGENCE; AUTOMATED PATTERN RECOGNITION; BIOLOGICAL MODEL; BRAIN; COMPUTER ASSISTED DIAGNOSIS; COMPUTER SIMULATION; ELASTICITY; EVALUATION; HISTOLOGY; HUMAN; IMAGE ENHANCEMENT; IMAGE SUBTRACTION; METHODOLOGY; NEUROANATOMY; NEUROLOGY; NUCLEAR MAGNETIC RESONANCE IMAGING; PHYSIOLOGY; PSYCHIATRY; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; THREE DIMENSIONAL IMAGING;

ALGORITHMS; ARTIFICIAL INTELLIGENCE; BRAIN; COMPUTER SIMULATION; ELASTICITY; HUMANS; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MAGNETIC RESONANCE IMAGING; MODELS, NEUROLOGICAL; NEUROANATOMY; NEUROLOGY; PATTERN RECOGNITION, AUTOMATED; PSYCHIATRY; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SUBTRACTION TECHNIQUE;

EID: 34047148847     PISSN: 02780062     EISSN: None     Source Type: Journal    
DOI: 10.1109/TMI.2007.892512     Document Type: Article

References (38)

1. K. Rohr, "Elastic registration of multimodal medical images: A survey," Künstliche Intelligenz, vol. 3, pp. 11-17, 2001.
2. A. W. Toga and P. Thompson, "The role of image registration in brain mapping," Image Vision Comput. J., vol. 19, pp. 3-24, 2001.
3. P. Thévenaz and M. Unser, "Optimization of mutual information for multiresolution image registration," IEEE Trans. Image Process., vol. 9, no. 12, pp. 2083-2099, Dec. 2000.
4. B. Zitova and J. Flusser, "Image registration methods: A survey," Image Vision Comput., vol. 21, pp. 977-1000, 2003.
5. J. Modersitzki, Numerical Methods for Image Registration. New York: Oxford Univ. Press, 2004.
6. J. Ashburner and K. J. Friston, "Nonlinear spatial normalization using basis functions," Human Brain Map., vol. 7, pp. 254-266, 1999.
7. J. P. Thirion, "Image matching as a diffusion process: An analogy with Maxwell's demons," Med. Image Anal., vol. 2, pp. 243-260, 1998.
8. M. Bro-Nielsen and C. Gramkow, "Fast fluid registration of medical images," in Proc. 4th Int. Conf. Visualization Biomed. Comput., 1996, pp. 267-276.
9. T. Rohlfing, C. R. Maurer, D. A. Bluemke, and M. A. Jacobs, "Volume-preserving nonrigid registration of MR breast images using free-form deformation with an incompresibility constraint," IEEE Trans. Med. Imag., vol. 12, no. 6, pp. 730-741, Jun. 2003.
10. Y. Pauchard, M. R. Smith, and M. P. Mintchev, "Modeling susceptibility difference attifacts produced by metallic implants in magnetic resonance imaging with point-based thin-plate spline image registration," in Proc. 26th Amu. Int. Conf. IEEE Eng. Med. Biol. Soc., 2004, pp. 1766-1769.
11. A. Guimond, A. Roche, N. Ayache, and J. Meunier, "Three-dimensional multimodal brain warping using the demons algorithm and adaptive intensity corrections," IEEE Trans. Med. Imag., vol. 20, no. 1, pp. 58-69, Jan. 2001.
12. J. P. Thirion, "Image matching as a diffusion process: Analogy with Maxwell's demons," Med. Image Anal., vol. 2, pp. 243-260, 1998.
13. G. Hermosillo, C. Chefd'Hotel, and O. Faugeras, A variational approach to multi-modal image matching 1NRIA, Sophia Antipolis, France, Res. Rep. 4117, 2001.
14. E. D'Agostino, F. Maes, D. Vandermuelen, and P. Suetens, "A viscous fluid model for multimodal non-rigid image registration using mutual information," Med. Image Anal., vol. 7, pp. 541-548, 2003.
15. W. R. Crum, D. L. G. Hill, and D. J. Hawkes, "Information theoretic similarity measures in non-rigid registration," in Pro. 18th Int. Conf. IPMI, 2003, pp. 378-387.
16. R. Bansal, L. H. Staib, and B. S. Peterson, "Mutual information based non-rigid image registration: A stochastic formulation," in Proc. ISMRM, 2005.
17. P. Rogelj, S. Kovacic, and J. C. Gee, "Point similarity measures for non-rigid registration of multi-modal data," Computer Vision Image Understand., vol. 92, pp. 112-140, 2003.
18. P. Rogelj and S. Kovacic, "Spatial deformation models for non-rigid image registration," in Proc. 9th Computer Vision Winter Workshop CVWW'04, 2004, pp. 79-88.
19. L. Ibanez, W. Schroeder, L. Ng, and J. Cates, The ITK Software Guide. Clifton Park, PA: Kitware, Inc., 2003.
20. J. B. A. Maintz, E. H. W. Meijering, and M. A. Viergever, "General multimodal elastic registration based on mutual information," in Med. Imag. 1998 - Image Process., 1998, pp. 144-154.
21. G. E. Christensen and H. J. Johnson, "Consistent image registration," IEEE Trans. Med. Imag., vol. 20, no. 7, pp. 568-582, Jul. 2001.
22. P. Rogelj and S. Kovačič, "Symmetric image registration," in Med. Imag. 2003: Image Process., 2003, pp. 334-343.
23. H. M. Chen and P. K. Varshney, "Mutual information-based CT-MR brain image registration using generalized partial volume point histogram estimation," IEEE Trans. Med. Imag., vol. 22, pp. 1111-1119, 2003.
24. C. Studholme, D. L. G. Hill, and D. J. Hawkes, "An overlap invariant entropy measure of 3-D medical image alignment," Pattern Recognit., vol. 32, pp. 71-86, 1999.
25. D. L. Collins, A. P. Zijdenbos, V. Kollokian, J. G. Sled, N. J. Kabani, C. J. Holmes, and A. C. Evans, "Design and construction of a realistic digital brain phantom," IEEE Trans. Med. Imag, vol. 17, no. 3, pp. 463-468, Jun. 1998.
26. J. G. Sled, A. P. Zijdenbos, and A. C. Evans, "A nonparametric method for automatic correction of intensity nonuniformity in MRI data," IEEE Trans. Med. Imag., vol. 17, pp. 87-97, 1998.
27. D. L. Collins, P. Neelin, T. M. Peters, and A. C. Evans, "Automatic 3-D inter-subject registration of MR volumetric data in standardized Talairach space," J. Comput. Assist. Tomogr., vol. 18, pp. 192-205, 1994.
28. D. R. Weinberger, "Dopamine, the prefrontal cortex, and genetic mechanism of schizophrenia," in Dopamine in the Pathophysiology and Treatment of Schizophrenia, S. Kapur and S. Y. Lecrubier, Eds. London, U.K.: Martin Dunitz, 2003, pp. 129-154.
29. P. S. Goldman-Rakic and L. D. Selemon, "Functional and anatomical aspects of prefrontal pathology in schizophrenia," Schizophrenia Bull., vol. 23, pp. 437-458, 1997.
30. N. C. Andreasen, S. Paradiso, and D. S. O'Leary, "Cognitive dysmetria as an integrative theory of schizophrenia a dysfunction in cortical-subcortical-cerebellar circuitry?," Schizophrenia Bull, vol. 24, pp. 203-218, 1998.
31. O. Clatz, H. Delingette, I. F. Talos, A. J. Golby, R. Kikinis, F. A. Jolesz, N. Ayache, and S. K. Warfield, "Robust nonrigid registration to capture brain shift from intraoperative MRI," IEEE Trans. Med. Imag., vol. 24, no. 11, pp. 1417-1427, Nov. 2005.
32. D. E. Job, H. C. Whalley, S. McConnell, M. Glabus, E. C. Johnstone, and S. M. Lawrie, "Structural gray matter differences between first-episode schizophrenics and normal controls using voxel-based morphometry," NeuroImage, vol. 17, pp. 880-889, 2002.
33. M. Kubicki, M. E. Shenton, D. F. Salisbury, Y. Hirayasu, K. Kasai, R. Kikinis, F. A. Jolesz, and R. W. McCarley, "Voxel-based morphometric analysis of gray matter in first episode schizophrenia," NeuroImage, vol. 17, pp. 1711-1719, 2002.
34. P. Salgado-Pineda, I. Baeza, M. Perez-Gomez, P. Vendrell, C. Junque, N. Bargallo, and M. Bernardo, "Sustained attention impairment correlates to gray matter decreases in first episode neuroleptic-naive schizophrenic patients," NeuroImage, vol. 19, pp. 365-375, 2003.
35. T. F. Farrow, T. J. Whitford, L. M. Williams, L. Gomes, and A. W. Harris, "Diagnosis-related regional gray matter loss over two years in first episode schizophrenia and bipolar disorder," Biol. Psychiatry, vol. 58, pp. 713-723, 2005.
36. P. N. Jayakumar, G. Venkatasubramanian, B. N. Gangadhar, N. Janakiramaiah, and M. S. Keshavan, "Optimized voxel-based morphometry of gray matter volume in first episode, antipsychotic-naive schizophrenia," Prog. Neuropsychopharmacol Biol. Psychiatry, vol. 29, pp. 587-591, 2005.
37. T. Kasparek, R. Prikryl, D. Schwarz, M. Mikl, E. Ceskova, and P. Krupa, "Prefrontal but not temporal gray matter changes in first-epizode schizophrenia men," Prog. Neuropsychopharmacol. Biol. Psychiatry, vol. 31, pp. 151-157, 2007.
38. D. Velakoulis, S. J. Wood, M. T. Wong, P. D. McGorry, A. Yung, L. Phillips, D. Smith, W. Brewer, T. Proffitt, P. Desmond, and C. Pantelis, "Hippocampal and amygdala volumes according to psychosis stage and diagnosis," Arch. Gen. Psychiatry, vol. 63, pp. 139-149, 2006.