-
3
-
-
15444373235
-
Evolution of cow nonstomach lysozyme genes
-
10.1139/g04-075 15644966
-
Irwin DM Evolution of cow nonstomach lysozyme genes Genome 2004 47 6 1082-1090 10.1139/g04-075 15644966
-
(2004)
Genome
, vol.47
, Issue.6
, pp. 1082-1090
-
-
Irwin, D.M.1
-
4
-
-
0017804093
-
Purification and characterization of a potent bactericidal and membrane active protein from the granules of human polymorphonuclear leukocytes
-
344320
-
Weiss J Elsbach P Olsson I Odeberg H Purification and characterization of a potent bactericidal and membrane active protein from the granules of human polymorphonuclear leukocytes J Biol Chem 1978 253 8 2664-2672 344320
-
(1978)
J Biol Chem
, vol.253
, Issue.8
, pp. 2664-2672
-
-
Weiss, J.1
Elsbach, P.2
Olsson, I.3
Odeberg, H.4
-
5
-
-
0027937406
-
Integration of antimicrobial host defenses: Role of the bactericidal/ permeability-increasing protein
-
10.1016/0966-842X(94)90449-9 7812665
-
Elsbach P Weiss J Levy O Integration of antimicrobial host defenses: role of the bactericidal/permeability-increasing protein Trends Microbiol 1994 2 9 324-328 10.1016/0966-842X(94)90449-9 7812665
-
(1994)
Trends Microbiol
, vol.2
, Issue.9
, pp. 324-328
-
-
Elsbach, P.1
Weiss, J.2
Levy, O.3
-
6
-
-
0027379689
-
Lipopolysaccharide-binding protein as a major plasma protein responsible for endotoxemic shock
-
47687 7694297 10.1073/pnas.90.21.9935
-
Gallay P Heumann D Le Roy D Barras C Glauser MP Lipopolysaccharide-binding protein as a major plasma protein responsible for endotoxemic shock Proc Natl Acad Sci U S A 1993 90 21 9935-9938 47687 7694297 10.1073/pnas.90.21.9935
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, Issue.21
, pp. 9935-9938
-
-
Gallay, P.1
Heumann, D.2
Le Roy, D.3
Barras, C.4
Glauser, M.P.5
-
8
-
-
0027275449
-
Plasma cholesteryl ester transfer protein
-
8409761
-
Tall AR Plasma cholesteryl ester transfer protein J Lipid Res 1993 34 8 1255-1274 8409761
-
(1993)
J Lipid Res
, vol.34
, Issue.8
, pp. 1255-1274
-
-
Tall, A.R.1
-
9
-
-
0034128334
-
Phospholipid transfer protein in lipid metabolism
-
10.1097/00041433-200006000-00009 10882344
-
Huuskonen J Ehnholm C Phospholipid transfer protein in lipid metabolism Curr Opin Lipidol 2000 11 3 285-289 10.1097/00041433-200006000-00009 10882344
-
(2000)
Curr Opin Lipidol
, vol.11
, Issue.3
, pp. 285-289
-
-
Huuskonen, J.1
Ehnholm, C.2
-
10
-
-
0842303170
-
Meet the relatives: A family of BPI- and LBP-related proteins
-
10.1016/j.it.2003.11.007 15106612
-
Bingle CD Craven CJ Meet the relatives: A family of BPI- and LBP-related proteins Trends Immunol 2004 25 2 53-55 10.1016/j.it.2003.11.007 15106612
-
(2004)
Trends Immunol
, vol.25
, Issue.2
, pp. 53-55
-
-
Bingle, C.D.1
Craven, C.J.2
-
11
-
-
4143135448
-
Host defense in oral and airway epithelia: Chromosome 20 contributes a new protein family
-
10.1016/j.biocel.2004.05.002 15313462
-
Bingle CD Gorr SU Host defense in oral and airway epithelia: Chromosome 20 contributes a new protein family Int J Biochem Cell Biol 2004 36 11 2144-2152 10.1016/j.biocel.2004.05.002 15313462
-
(2004)
Int J Biochem Cell Biol
, vol.36
, Issue.11
, pp. 2144-2152
-
-
Bingle, C.D.1
Gorr, S.U.2
-
12
-
-
0034597340
-
Characterisation of the human plunc gene, a gene product with an upper airways and nasopharyngeal restricted expression pattern
-
11018263
-
Bingle CD Bingle L Characterisation of the human plunc gene, a gene product with an upper airways and nasopharyngeal restricted expression pattern Biochim Biophys Acta 2000 1493 3 363-367 11018263
-
(2000)
Biochim Biophys Acta
, vol.1493
, Issue.3
, pp. 363-367
-
-
Bingle, C.D.1
Bingle, L.2
-
13
-
-
0034805942
-
Genomic organization of the mouse plunc gene and expression in the developing airways and thymus
-
10.1006/bbrc.2001.5024 11396972
-
LeClair EE Nguyen L Bingle L MacGowan A Singleton V Ward SJ Bingle CD Genomic organization of the mouse plunc gene and expression in the developing airways and thymus Biochem Biophys Res Commun 2001 284 3 792-797 10.1006/bbrc.2001.5024 11396972
-
(2001)
Biochem Biophys Res Commun
, vol.284
, Issue.3
, pp. 792-797
-
-
LeClair, E.E.1
Nguyen, L.2
Bingle, L.3
MacGowan, A.4
Singleton, V.5
Ward, S.J.6
Bingle, C.D.7
-
14
-
-
0037091061
-
PLUNC: A novel family of candidate host defence proteins expressed in the upper airways and nasopharynx
-
10.1093/hmg/11.8.937 11971875
-
Bingle CD Craven CJ PLUNC: A novel family of candidate host defence proteins expressed in the upper airways and nasopharynx Hum Mol Genet 2002 11 8 937-943 10.1093/hmg/11.8.937 11971875
-
(2002)
Hum Mol Genet
, vol.11
, Issue.8
, pp. 937-943
-
-
Bingle, C.D.1
Craven, C.J.2
-
15
-
-
1542404518
-
Cloning and expression of a mouse member of the PLUNC protein family exclusively expressed in tongue epithelium
-
10.1016/j.ygeno.2003.09.015 15028288
-
LeClair EE Nomellini V Bahena M Singleton V Bingle L Craven CJ Bingle CD Cloning and expression of a mouse member of the PLUNC protein family exclusively expressed in tongue epithelium Genomics 2004 83 4 658-666 10.1016/j.ygeno.2003.09.015 15028288
-
(2004)
Genomics
, vol.83
, Issue.4
, pp. 658-666
-
-
LeClair, E.E.1
Nomellini, V.2
Bahena, M.3
Singleton, V.4
Bingle, L.5
Craven, C.J.6
Bingle, C.D.7
-
16
-
-
14944382872
-
SPLUNC1 (PLUNC) is expressed in glandular tissues of the respiratory tract and in lung tumours with a glandular phenotype
-
10.1002/path.1726 15685591
-
Bingle L Cross SS High AS Wallace WA Devine DA Havard S Campos MA Bingle CD SPLUNC1 (PLUNC) is expressed in glandular tissues of the respiratory tract and in lung tumours with a glandular phenotype J Pathol 2005 205 4 491-497 10.1002/path.1726 15685591
-
(2005)
J Pathol
, vol.205
, Issue.4
, pp. 491-497
-
-
Bingle, L.1
Cross, S.S.2
High, A.S.3
Wallace, W.A.4
Devine, D.A.5
Havard, S.6
Campos, M.A.7
Bingle, C.D.8
-
17
-
-
0041566732
-
Expression and anti-bacterial activity of human parotid secretory protein (PSP)
-
10.1042/BST0310815 12887312
-
Geetha C Venkatesh SG Dunn BH Gorr SU Expression and anti-bacterial activity of human parotid secretory protein (PSP) Biochem Soc Trans 2003 31 Pt 4 815-818 10.1042/BST0310815 12887312
-
(2003)
Biochem Soc Trans
, vol.31
, Issue.PART 4
, pp. 815-818
-
-
Geetha, C.1
Venkatesh, S.G.2
Dunn, B.H.3
Gorr, S.U.4
-
18
-
-
0030329937
-
The relative abundance of a salivary protein, bSP30, is correlated with susceptibility to bloat in cattle herds selected for high or low bloat susceptibility
-
9022155
-
Rajan GH Morris CA Carruthers VR Wilkins RJ Wheeler TT The relative abundance of a salivary protein, bSP30, is correlated with susceptibility to bloat in cattle herds selected for high or low bloat susceptibility Anim Genet 1996 27 6 407-414 9022155
-
(1996)
Anim Genet
, vol.27
, Issue.6
, pp. 407-414
-
-
Rajan, G.H.1
Morris, C.A.2
Carruthers, V.R.3
Wilkins, R.J.4
Wheeler, T.T.5
-
19
-
-
0037069747
-
The BSP30 salivary proteins from cattle, LUNX/PLUNC and von Ebner's minor salivary gland protein are members of the PSP/LBP superfamily of proteins
-
12427544
-
Wheeler TT Haigh BJ McCracken JY Wilkins RJ Morris CA Grigor MR The BSP30 salivary proteins from cattle, LUNX/PLUNC and von Ebner's minor salivary gland protein are members of the PSP/LBP superfamily of proteins Biochim Biophys Acta 2002 1579 2-3 92-100 12427544
-
(2002)
Biochim Biophys Acta
, vol.1579
, Issue.2-3
, pp. 92-100
-
-
Wheeler, T.T.1
Haigh, B.J.2
McCracken, J.Y.3
Wilkins, R.J.4
Morris, C.A.5
Grigor, M.R.6
-
20
-
-
0042568871
-
Bovine parotid secretory protein: Structure, expression and relatedness to other BPI (bactericidal/permeability-increasing protein)-like proteins
-
10.1042/BST0310781 12887305
-
Wheeler TT Hood K Oden K McCracken J Morris CA Bovine parotid secretory protein: Structure, expression and relatedness to other BPI (bactericidal/permeability-increasing protein)-like proteins Biochem Soc Trans 2003 31 Pt 4 781-784 10.1042/BST0310781 12887305
-
(2003)
Biochem Soc Trans
, vol.31
, Issue.PART 4
, pp. 781-784
-
-
Wheeler, T.T.1
Hood, K.2
Oden, K.3
McCracken, J.4
Morris, C.A.5
-
22
-
-
0035189310
-
Spidey: A tool for mRNA-to-genomic alignments
-
311166 11691860
-
Wheelan SJ Church DM Ostell JM Spidey: A tool for mRNA-to-genomic alignments Genome Res 2001 11 11 1952-1957 311166 11691860
-
(2001)
Genome Res
, vol.11
, Issue.11
, pp. 1952-1957
-
-
Wheelan, S.J.1
Church, D.M.2
Ostell, J.M.3
-
23
-
-
0030760314
-
Crystal structure of human BPI and two bound phospholipids at 2.4 angstrom resolution
-
10.1126/science.276.5320.1861 9188532
-
Beamer LJ Carroll SF Eisenberg D Crystal structure of human BPI and two bound phospholipids at 2.4 angstrom resolution Science 1997 276 5320 1861-1864 10.1126/science.276.5320.1861 9188532
-
(1997)
Science
, vol.276
, Issue.5320
, pp. 1861-1864
-
-
Beamer, L.J.1
Carroll, S.F.2
Eisenberg, D.3
-
25
-
-
34047111671
-
Bos Taurus repetitive sequences for IBBMC consortia
-
Bos Taurus repetitive sequences for IBBMC consortia http://www.apexcoopworth.co.nz/BTrepeats.htm
-
-
-
-
26
-
-
0142059650
-
An Alu transposition model for the origin and expansion of human segmental duplications
-
1180605 14505274 10.1086/378594
-
Bailey JA Liu G Eichler EE An Alu transposition model for the origin and expansion of human segmental duplications Am J Hum Genet 2003 73 4 823-834 1180605 14505274 10.1086/378594
-
(2003)
Am J Hum Genet
, vol.73
, Issue.4
, pp. 823-834
-
-
Bailey, J.A.1
Liu, G.2
Eichler, E.E.3
-
27
-
-
0032496666
-
Secretory ribonuclease genes and pseudogenes in true ruminants
-
10.1016/S0378-1119(98)00177-2 9611269
-
Breukelman HJ van der Munnik N Kleineidam RG Furia A Beintema JJ Secretory ribonuclease genes and pseudogenes in true ruminants Gene 1998 212 2 259-268 10.1016/S0378-1119(98)00177-2 9611269
-
(1998)
Gene
, vol.212
, Issue.2
, pp. 259-268
-
-
Breukelman, H.J.1
van der Munnik, N.2
Kleineidam, R.G.3
Furia, A.4
Beintema, J.J.5
-
28
-
-
0034724185
-
Adaptive diversification within a large family of recently duplicated, placentally expressed genes
-
16237 10725351 10.1073/pnas.050002797
-
Hughes AL Green JA Garbayo JM Roberts RM Adaptive diversification within a large family of recently duplicated, placentally expressed genes Proc Natl Acad Sci U S A 2000 97 7 3319-3323 16237 10725351 10.1073/ pnas.050002797
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, Issue.7
, pp. 3319-3323
-
-
Hughes, A.L.1
Green, J.A.2
Garbayo, J.M.3
Roberts, R.M.4
-
30
-
-
62749118573
-
Identification of a new potential airway irritation marker, palate lung nasal epithelial clone protein, in human nasal lavage fluid with two-dimensional electrophoresis and matrix-assisted laser desorption/ ionization-time of flight
-
10.1002/1522-2683(200105)22:9<1795::AID-ELPS1795>3.0.CO;2-J 11425234
-
Lindahl M Stahlbom B Tagesson C Identification of a new potential airway irritation marker, palate lung nasal epithelial clone protein, in human nasal lavage fluid with two-dimensional electrophoresis and matrix-assisted laser desorption/ionization-time of flight Electrophoresis 2001 22 9 1795-1800 10.1002/ 1522-2683(200105)22:9<1795::AID-ELPS1795>3.0.CO;2-J 11425234
-
(2001)
Electrophoresis
, vol.22
, Issue.9
, pp. 1795-1800
-
-
Lindahl, M.1
Stahlbom, B.2
Tagesson, C.3
-
31
-
-
2542480839
-
PLUNC in human nasal lavage fluid: Multiple isoforms that bind to lipopolysaccharide
-
15158712
-
Ghafouri B Kihlstrom E Tagesson C Lindahl M PLUNC in human nasal lavage fluid: Multiple isoforms that bind to lipopolysaccharide Biochim Biophys Acta 2004 1699 1-2 57-63 15158712
-
(2004)
Biochim Biophys Acta
, vol.1699
, Issue.1-2
, pp. 57-63
-
-
Ghafouri, B.1
Kihlstrom, E.2
Tagesson, C.3
Lindahl, M.4
-
32
-
-
0035919670
-
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
-
10.1126/science.1061217 11463916
-
Tettelin H Nelson KE Paulsen IT Eisen JA Read TD Peterson S Heidelberg J DeBoy RT Haft DH Dodson RJ Durkin AS Gwinn M Kolonay JF Nelson WC Peterson JD Umayam LA White O Salzberg SL Lewis MR Radune D Holtzapple E Khouri H Wolf AM Utterback TR Hansen CL McDonald LA Feldblyum TV Angiuoli S Dickinson T Hickey EK Holt IE Loftus BJ Yang F Smith HO Venter JC Dougherty BA Morrison DA Hollingshead SK Fraser CM Complete genome sequence of a virulent isolate of Streptococcus pneumoniae Science 2001 293 5529 498-506 10.1126/science.1061217 11463916
-
(2001)
Science
, vol.293
, Issue.5529
, pp. 498-506
-
-
Tettelin, H.1
Nelson, K.E.2
Paulsen, I.T.3
Eisen, J.A.4
Read, T.D.5
Peterson, S.6
Heidelberg, J.7
DeBoy, R.T.8
Haft, D.H.9
Dodson, R.J.10
Durkin, A.S.11
Gwinn, M.12
Kolonay, J.F.13
Nelson, W.C.14
Peterson, J.D.15
Umayam, L.A.16
White, O.17
Salzberg, S.L.18
Lewis, M.R.19
Radune, D.20
Holtzapple, E.21
Khouri, H.22
Wolf, A.M.23
Utterback, T.R.24
Hansen, C.L.25
McDonald, L.A.26
Feldblyum, T.V.27
Angiuoli, S.28
Dickinson, T.29
Hickey, E.K.30
Holt, I.E.31
Loftus, B.J.32
Yang, F.33
Smith, H.O.34
Venter, J.C.35
Dougherty, B.A.36
Morrison, D.A.37
Hollingshead, S.K.38
Fraser, C.M.39
more..
-
33
-
-
0036137277
-
DNA sequence quality trimming and vector removal
-
10.1093/bioinformatics/17.12.1093 11751217
-
Chou HH Holmes MH DNA sequence quality trimming and vector removal Bioinformatics 2001 17 12 1093-1104 10.1093/bioinformatics/17.12.1093 11751217
-
(2001)
Bioinformatics
, vol.17
, Issue.12
, pp. 1093-1104
-
-
Chou, H.H.1
Holmes, M.H.2
-
34
-
-
34047107710
-
-
Ensembl Cow http://www.ensembl.org/Bos_taurus/index.html
-
-
-
-
35
-
-
34047164454
-
-
TIGR Cattle Gene Index http://www.tigr.org/tigr-scripts/tgi/ T_index.cgi?species=cattle
-
-
-
-
36
-
-
18744383071
-
GMAP: A genomic mapping and alignment program for mRNA and EST sequences
-
10.1093/bioinformatics/bti310 15728110
-
Wu TD Watanabe CK GMAP: A genomic mapping and alignment program for mRNA and EST sequences Bioinformatics 2005 21 9 1859-1875 10.1093/ bioinformatics/bti310 15728110
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 1859-1875
-
-
Wu, T.D.1
Watanabe, C.K.2
-
37
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
553969 15713233 10.1186/1471-2105-6-31
-
Slater GS Birney E Automated generation of heuristics for biological sequence comparison BMC Bioinformatics 2005 6 1 31 553969 15713233 10.1186/1471-2105-6-31
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.1
, pp. 31
-
-
Slater, G.S.1
Birney, E.2
-
38
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
10.1006/jmbi.1997.0951 9149143
-
Burge C Karlin S Prediction of complete gene structures in human genomic DNA J Mol Biol 1997 268 1 78-94 10.1006/jmbi.1997.0951 9149143
-
(1997)
J Mol Biol
, vol.268
, Issue.1
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
39
-
-
84874611273
-
GBrowse: The generic genome browser
-
GBrowse: The generic genome browser http://www.gmod.org/?q=node/71
-
-
-
-
40
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
10.1080/10635150390235520 14530136
-
Guindon S Gascuel O A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood Syst Biol 2003 52 5 696-704 10.1080/10635150390235520 14530136
-
(2003)
Syst Biol
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
41
-
-
0030807655
-
BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
-
9254330
-
Gascuel O BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data Mol Biol Evol 1997 14 7 685-695 9254330
-
(1997)
Mol Biol Evol
, vol.14
, Issue.7
, pp. 685-695
-
-
Gascuel, O.1
-
42
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
10666704
-
Yang Z Nielsen R Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models Mol Biol Evol 2000 17 1 32-43 10666704
-
(2000)
Mol Biol Evol
, vol.17
, Issue.1
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
-
43
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
9367129
-
Yang Z PAML: A program package for phylogenetic analysis by maximum likelihood Comput Appl Biosci 1997 13 5 555-556 9367129
-
(1997)
Comput Appl Biosci
, vol.13
, Issue.5
, pp. 555-556
-
-
Yang, Z.1
-
44
-
-
16344378246
-
Bayes empirical bayes inference of amino acid sites under positive selection
-
10.1093/molbev/msi097 15689528
-
Yang Z Wong WS Nielsen R Bayes empirical bayes inference of amino acid sites under positive selection Mol Biol Evol 2005 22 4 1107-1118 10.1093/ molbev/msi097 15689528
-
(2005)
Mol Biol Evol
, vol.22
, Issue.4
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.2
Nielsen, R.3
-
45
-
-
12244289248
-
OWEN: Aligning long collinear regions of genomes
-
10.1093/bioinformatics/18.12.1703 12490463
-
Ogurtsov AY Roytberg MA Shabalina SA Kondrashov AS OWEN: Aligning long collinear regions of genomes Bioinformatics 2002 18 12 1703-1704 10.1093/ bioinformatics/18.12.1703 12490463
-
(2002)
Bioinformatics
, vol.18
, Issue.12
, pp. 1703-1704
-
-
Ogurtsov, A.Y.1
Roytberg, M.A.2
Shabalina, S.A.3
Kondrashov, A.S.4
-
46
-
-
0040241402
-
Genomic sequencing
-
345422 10.1073/pnas.81.7.1991
-
Church GM Gilbert W Genomic sequencing Proc Natl Acad Sci U S A 1984 81 7 1991-1995 345422 6326095 10.1073/pnas.81.7.1991
-
(1984)
Proc Natl Acad Sci U S A
, vol.81
, Issue.7
, pp. 1991-1995
-
-
Church, G.M.1
Gilbert, W.2
-
48
-
-
34047128084
-
-
UCSC Genome Bioinformatics http://genome.ucsc.edu/
-
-
-
-
49
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
1461088 10790415
-
Yang Z Nielsen R Goldman N Pedersen AM Codon-substitution models for heterogeneous selection pressure at amino acid sites Genetics 2000 155 1 431-449 1461088 10790415
-
(2000)
Genetics
, vol.155
, Issue.1
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.M.4
-
50
-
-
8544225780
-
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
-
1448811 15514074 10.1534/genetics.104.031153
-
Wong WS Yang Z Goldman N Nielsen R Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites Genetics 2004 168 2 1041-1051 1448811 15514074 10.1534/genetics.104.031153
-
(2004)
Genetics
, vol.168
, Issue.2
, pp. 1041-1051
-
-
Wong, W.S.1
Yang, Z.2
Goldman, N.3
Nielsen, R.4
|