Poly(A)-binding protein binds to A-rich sequences via RNA-binding domains 1+2 and 3+4

RNA Biology

Volumn 3, Issue 4, 2006, Pages 170-177

  Khanam, Tasneem ^a   Muddashetty, Ravi Sondekoppa ^a,c   Kahvejian, Avak ^b   Sonenberg, Nahum ^b   Brosius, Juergen ^a  

^a UNIVERSITY OF MÜNSTER   (Germany)

^b MCGILL UNIVERSITY   (Canada)

^c EMORY UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

EMSA; npcRNAs; PABP; Poly(A) tail; RRMs; Translation

Indexed keywords

POLYADENYLIC ACID BINDING PROTEIN; RNA;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN RNA BINDING; PROTEIN STRUCTURE; RNA SEQUENCE;

EID: 33947706276     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.3.4.4075     Document Type: Article

References (30)

1. Kahvejian A, Svitkin YV, Sukarieh R, M'Boutchou MN, Sonenberg N. Mammalian poly(A)-binding protein is a eukaryotic translation initiation factor, which acts via multiple mechanisms. Genes Dev 2005; 19:104-13.
2. Sonenberg N, Dever TE. Eukaryotic translation initiation factors and regulators. Curr Opin Struct Biol 2003; 13:56-63.
3. Bernstein P, Peltz SW, Ross J. The poly(A)-poly(A)-binding protein complex is a major determinant of mRNA stability in vitro. Mol Cell Biol 1989; 9:659-70.
4. Sachs AB, Davis RW, Kornberg RD. A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability. Mol Cell Biol 1987; 7:3268-76.
5. Adam SA, Nakagawa T, Swanson MS, Woodruff TK, Dreyfuss G. mRNA polyadenylate-binding protein: Gene isolation and sequencing and identification of a ribonucleoprotein consensus sequence. Mol Cell Biol 1986; 6:2932-43.
6. Melo EO, Dhalia R, Martins de Sa C, Standart N, de Melo Neto OP. Identification of a C-terminal poly(A)-binding protein (PABP)-PABP interaction domain: Role in cooperative binding to poly (A) and efficient cap distal translational repression. J Biol Chem 2003; 278:46357-68.
7. Deo RC, Bonanno JB, Sonenberg N, Burley SK. Recognition of polyadenylate RNA by the poly(A)-binding protein. Cell 1999; 98:835-45.
8. Bandziulis RJ, Swanson MS, Dreyfuss G. RNA-binding proteins as developmental regulators. Genes Dev 1989; 3:431-7.
9. Burd CG, Matunis EL, Dreyfuss G. The multiple RNA-binding domains of the mRNA poly(A)-binding protein have different RNA-binding activities. Mol Cell Biol 1991; 11:3419-24.
10. Dreyfuss G, Swanson MS, Pinol-Roma S. Heterogeneous nuclear ribonucleoprotein particles and the pathway of mRNA formation. Trends Biochem Sci 1988; 13:86-91.
11. Gray NK, Coller JM, Dickson KS, Wickens M. Multiple portions of poly(A)-binding protein stimulate translation in vivo. Embo J 2000; 19:4723-33.
12. Nietfeld W, Mentzel H, Pieler T. The Xenopus laevis poly(A) binding protein is composed of multiple functionally independent RNA binding domains. Embo J 1990; 9:3699-705.
13. Kuhn U, Pieler T. Xenopus poly(A) binding protein: Functional domains in RNA binding and protein-protein interaction. J Mol Biol 1996; 256:20-30.
14. Sladic RT, Lagnado CA, Bagley CJ, Goodall GJ. Human PABP binds AU-rich RNA via RNA-binding domains 3 and 4. Eur J Biochem 2004; 271:450-7.
15. Muddashetty R, Khanam T, Kondrashov A, Bundman M, Iacoangeli A, Kremerskothen J, Duning K, Barnekow A, Huttenhofer A, Tiedge H, Brosius J. Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles. J Mol Biol 2002; 321:433-45.
16. West N, Roy-Engel AM, Imataka H, Sonenberg N, Deininger P. Shared protein components of SINE RNPs. J Mol Biol 2002; 321:423-32.
17. Kondrashov AV. Common principles of the regulatory systems of transcription and translation as revealed by module structure of preinitiation TATA-complex and BC1. RNA: PhD Dissertation. Russian Academy of Sciences, 2001.
18. Wang H, Iacoangeli A, Popp S, Muslimov IA, Imataka H, Sonenberg N, Lomakin IB, Tiedge H. Dendritic BC1 RNA: Functional role in regulation of translation initiation. J Neurosci 2002; 22:10232-41.
19. Wang H, Iacoangeli A, Lin D, Williams K, Denman RB, Hellen CU, Tiedge H. Dendritic BC1 RNA in translational control mechanisms. J Cell Biol 2005; 171:811-21.
20. Kondrashov AV, Kiefmann M, Ebnet K, Khanam T, Muddashetty RS, Brosius J. Inhibitory effect of naked neural BC1 RNA or BC200 RNA on eukaryotic in vitro translation systems is reversed by poly(A)-binding protein (PABP). J Mol Biol 2005; 353:88-103.
21. Preiss T, Hentze MW. Dual function of the messenger RNA cap structure in poly(A)-tail-pro- promoted translation in yeast. Nature 1998; 392:516-20.
22. Cheng JG, Tiedge H, Brosius J. Identification and characterization of BC1 RNP particles. DNA Cell Biol 1996; 15:549-59.
23. Bovia F, Wolff N, Ryser S, Strub K. The SRP9/14 subunit of the human signal recognition particle binds to a variety of Alu-like RNAs and with higher affinity than its mouse homolog. Nucleic Acids Res 1997; 25:318-26.
24. Khaleghpour K, Kahvejian A, De Crescenzo G, Roy G, Svitkin YV, Imataka H, O'Connor-McCourt M, Sonenberg N. Dual interactions of the translational repressor Paip2 with poly(A) binding protein. Mol Cell Biol 2001; 21:5200-13.
25. Mullin C, Duning K, Barnekow A, Richter D, Kremerskothen J, Mohr E. Interaction of rat poly(A)-binding protein with poly(A)- and non-poly(A) sequences is preferentially mediated by RNA recognition motifs 3+4. FEBS Lett 2004; 576:437-41.
26. Baer BW, Kornberg RD. The protein responsible for the repeating structure of cytoplasmic poly(A)-ribonucleoprotein. J Cell Biol 1983; 96:717-21.
27. Du L, Richter JD. Activity-dependent polyadenylation in neurons. RNA 2005; 11:1340-7.
28. Svane PC, Thorn NA, Richter D, Mohr E. Effect of hypoosmolality on the abundance, poly(A) tail length and axonal targeting of arginine vasopressin and oxytocin mRNAs in rat hypothalamic magnocellular neurons. FEBS Lett 1995; 373:35-8.
29. Baer BW, Kornberg RD. Repeating structure of cytoplasmic poly(A)-ribonucleoprotein. Proc Natl Acad Sci USA 1980; 77:1890-2.
30. Hasler J, Strub K. Alu RNP and Alu RNA regulate translation initiation in vitro. Nucleic Acids Res 2006; 34:2374-85.