Shared protein components of SINE RNPs

Journal of Molecular Biology

Volumn 321, Issue 3, 2002, Pages 423-432

  West, Neva C ^a   Roy Engel, Astrid M ^a   Imataka, Hiroaki ^b   Sonenberg, Nahum ^b   Deininger, Prescott L ^a,c  

^a TULANE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b MCGILL UNIVERSITY   (Canada)

^c OCHSNER MEDICAL CENTER   (United States)

Author keywords

PABP; Retroelements; Ribonucleoprotein complexes; RNA binding proteins; Short interspersed element

Indexed keywords

BINDING PROTEIN; BINDING PROTEIN BC1; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL LINE; CONTROLLED STUDY; HUMAN; HUMAN CELL; IMMUNOPRECIPITATION; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN RNA BINDING; SEQUENCE ANALYSIS; SHORT INTERSPERSED REPEAT;

RODENTIA;

EID: 0036385492     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(02)00542-9     Document Type: Article

References (54)

1. Rogers, J. H. (1985). The origin and evolution of retroposons. Int. Rev. Cytol. 93, 187-279.
2. Weiner, A., Deininger, P. & Efstradiatis, A. (1986). The reverse flow of genetic information: pseudogenes and transposable elements derived from non-viral cellular RNA. Annu. Rev. Biochem. 55, 631-661.
3. Boeke, J., Garfinkel, D. J., Styles, C. A. & Fink, C. R. (1985). Ty elements transpose through an RNA intermediate. Cell, 40, 491-500.
4. Deininger, P. L. & Daniels, G. (1986). The recent evolution of mammalian repetitive DNA elements. Trends Genet. 2, 76-80.
5. Batzer, M. A., Kilroy, G. E., Richard, P. E., Shaikh, T. H., Desselle, T. D., Hoppens, C. L. & Deininger, P. L. (1990). Structure and variability of recently inserted Alu family members. Nucl. Acids Res. 18, 6793-6798. Published erratum appears in Nucl. Acids Res. 19, 698-699.
6. Deininger, P. L., Batzer, M. A., Hutchison, C. A. & Edgell, M. H. (1992). Master genes in mammalian repetitive DNA amplification. Trends Genet. 8, 307-311.
7. Schmid, C. W. & Maraia, R. (1992). Transcriptional regulation and transpositional selection of active SINE sequences. Curr. Opin. Genet. Dev. 2, 874-882.
8. Cheng, J. G., Tiedge, H. & Brosius, J. (1996). Identification and characterization of BC1 RNP particles. DNA Cell Biol. 15, 549-559.
9. Kobayashi, S., Goto, S. & Anzai, K. (1991). Brain-specific small RNA transcript of the identifier sequences is present as a 10 S ribonucleoprotein particle. J. Biol. Chem. 266, 4726-4730.
10. Sutcliffe, J. G., Milner, R. J., Bloom, F. E. & Lerner, R. A. (1982). Common 82-nucleotide sequence unique to brain RNA. Proc. Natl Acad. Sci. USA, 79, 4942-4946.
11. Okada, N. & Ohshima, K. (1995). Evolution of tRNA-derived SINEs. In The Impact of Short Interspersed Elements (SINEs) on the Host Genome (Maraia, R., ed.), pp. 61-80, R. G. Landes, Co., Austin, TX.
12. McKinnon, R. D., Danielson, P., Brow, M. A., Bloom, F. E. Sutcliffe, J. G. (1987). Expression of small cytoplasmic transcripts of the rat identifier element in vivo and in cultured cells. Mol. Cell Biol. 7, 2148-2154.
13. Sutcliffe, J. G., Milner, R. J., Gottesfeld, J. M. & Lerner, R. A. (1984). Identifier sequences are transcribed specifically in brain. Nature, 308, 237-241.
14. Martignetti, J. A. & Brosius, J. (1995). BC1 RNA: transcriptional analysis of a neural cell-specific RNA polymerase III transcript. Mol. Cell Biol. 15, 1642-1650.
15. Kim, J., Martignetti, J. A., Shen, M. R., Brosius, J. & Deininger, P. (1994). Rodent BC1 RNA gene as a master gene for ID element amplification. Proc. Natl Acad. Sci. USA, 91, 3607-3611.
16. Deininger, P. L., Tiedge, H., Kim, J. & Brosius, J. (1996). Evolution, expression, and possible function of a master gene for amplification of an interspersed repeated DNA family in rodents. Prog. Nucl. Acid Res. Mol. Biol. 52, 67-88.
17. Roy, A. M., West, N. C., Rao, A., Adhikari, P., Alemán, C., Barnes, A. P. & Deininger, P. L. (2000). Upstream flanking sequences and transcription of SINEs. J. Mol. Biol. 302, 17-25.
18. Daniels, G. R. & Deininger, P. L. (1985). Repeat sequence families derived from mammalian tRNA genes. Nature, 317, 819-822.
19. Rozhdestvensky, T. S., Kopylov, A. M., Brosius, J. & Huttenhofer, A. (2001). Neuronal BC1 RNA structure: evolutionary conversion of a tRNA(Ala) domain into an extended stem-loop structure. RNA, 7, 722-730.
20. Boeke, J. D. (1997). LINEs and Alus-the polyA connection. Nature Genet. 16, 6-7.
21. Kobayashi, S., Agui, K., Kamo, S., Li, Y. & Anzai, K. (2000). Neural BC1 RNA associates with pur alpha, a single-stranded DNA and RNA binding protein, which is involved in the transcription of the BC1 RNA gene. Biochem. Biophys. Res. Commun. 277, 341-347.
22. Kremerskothen, J., Nettermann, M., op de Bekke, A., Bachmann, M. & Brosius, J. (1998). Identification of human autoantigen La/SS-B as BC1/BC200 RNA-binding protein. DNA Cell Biol. 17, 751-759.
23. Muramatsu, T., Ohmae, A. & Anzai, K. (1998). BC1 RNA protein particles in mouse brain contain two y-,h-element-binding proteins, translin and a 37 kDa protein. Biochem. Biophys. Res. Commun. 247, 7-11.
24. Han, J. R., Gu, W. & Hecht, N. B. (1995). Testis-brain RNA-binding protein, a testicular translational regulatory RNA-binding protein, is present in the brain and binds to the 3′ untranslated regions of transported brain mRNAs. Biol. Reprod. 53, 707-717.
25. Kobayashi, S., Takashima, A. & Anzai, K. (1998). The dendritic translocation of translin protein in the form of BC1 RNA protein particles in developing rat hippocampal neurons in primary culture. Biochem. Biophys. Res. Commun. 253, 448-453.
26. Hsu, K., Chang, D. Y. & Maraia, R. J. (1995). Human signal recognition particle (SRP) Alu-associated protein also binds Alu interspersed repeat sequence RNAs. Characterization of human SRP9. J. Biol. Chem. 270, 10179-10186.
27. Deininger, P. L. & Batzer, M. A. (1999). Alu repeats and human disease. Mol. Genet. Metab. 67, 183-193.
28. Brosius, J. (1999). RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements. Gene, 238, 115-134.
29. Norris, J., Fan, D., Alemán, C., Marks, J. R., Futreal, P. A., Wiseman, R. W. et al. (1995). Identification of a new subclass of Alu DNA repeats which can function as estrogen receptor-dependent transcriptional enhancers. J. Biol. Chem. 270, 22777-22782.
30. Stoppa-Lyonnet, D., Carter, P. E., Meo, T. & Tosi, M. (1990). Clusters of intragenic Alu repeats predispose the human C1 inhibitor locus to deleterious rearrangements. Proc. Natl Acad. Sci. USA, 87, 1551-1555.
31. Schmid, C. W. (1996). Alu: structure, origin, evolution, significance and function of one-tenth of human DNA. Prog. Nucl. Acid Res. Mol. Biol. 53, 283-319.
32. Schmid, C. W. (1998). Does SINE evolution preclude Alu function? Nucl. Acids Res. 26, 4541-4550.
33. Wu, X. Q., Gu, W., Meng, X. & Hecht, N. B. (1997). The RNA-binding protein, TB-RBP, is the mouse homologue of translin, a recombination protein associated with chromosomal translocations. Proc. Natl Acad. Sci. USA, 94, 5640-5645.
34. Imataka, H., Gradi, A. & Sonenberg, N. (1998). A newly identified N-terminal amino acid sequence of human eIF4G binds poly(A)-binding protein and functions in poly(A)-dependent translation. EMBO J. 17, 7480-7489.
35. Goodier, J. L., Fan, H. & Maraia, R. J. (1997). A carboxy-terminal basic region controls RNA polymerase III transcription factor activity of human La protein. Mol. Cell Biol. 17, 5823-5832.
36. Goodier, J. L. & Maraia, R. J. (1998). Terminator-specific recycling of a B1-Alu transcription complex by RNA polymerase III is mediated by the RNA terminus-binding protein La. J. Biol. Chem. 273, 26110-26116.
37. Huhn, P., Pruijn, G. J., van Venrooij, W. J. & Bachmann, M. (1997). Characterization of the auto-antigen La (SS-B) as a dsRNA unwinding enzyme. Nucl. Acids Res. 25, 410-416.
38. Fan, H., Goodier, J. L., Chamberlain, J. R., Engelke, D. R. & Maraia, R. J. (1998). 5′ Processing of tRNA precursors can be modulated by the human La antigen phosphoprotein. Mol. Cell Biol. 18, 3201-3211.
39. Labuda, D. & Zietkiewicz, E. (1994). Evolution of secondary structure in the family of 7SL-like RNAs. J. Mol. Evol. 39, 506-518.
40. Afonina, E., Neumann, M. & Pavlakis, G. N. (1997). Preferential binding of poly(A)-binding protein 1 to an inhibitory RNA element in the human immunodeficiency virus type 1 gag mRNA. J. Biol. Chem. 272, 2307-2311.
41. Vidaud, D., Vidaud, M., Bahnak, B. R., Siguret, V., Gispert, S. S., Laurian, Y. et al. (1993). Haemophilia B due to a de novo insertion of a human-specific Alu subfamily member within the coding region of the factor IX gene. Eur. J. Hum. Genet. 1, 30-36.
42. Oldridge, M., Zackai, E. H., McDonald-McGinn, D. M., Iseki, S., Morriss-Kay, G. M., Twigg, S. R. et al. (1999). De novo alu-element insertions in FGFR2 identify a distinct pathological basis for Apert syndrome. Am. J. Hum. Genet. 64, 446-461.
43. Muratani, K., Hada, T., Yamamoto, Y., Kaneko, T., Shigeto, Y., Ohue, T. et al. (1991). Inactivation of the cholinesterase gene by Alu insertion: possible mechanism for human gene transposition. Proc. Natl Acad. Sci. USA, 88, 11315-11319.
44. Wallace, M. R., Andersen, L. B., Saulino, A. M., Gregory, P. E., Glover, T. W. & Collins, F. S. (1991). A de novo Alu insertion results in neurofibromatosis type 1. Nature, 353, 864-866.
45. Craig, A. W., Haghighat, A., Yu, A. T. & Sonenberg, N. (1998). Interaction of polyadenylate-binding protein with the eIF4G homologue PAIP enhances translation. Nature, 392, 520-523.
46. Hoshino, S., Imai, M., Kobayashi, T., Uchida, N. & Katada, T. (1999). The eukaryotic polypeptide chain releasing factor (eRF3/GSPT) carrying the translation termination signal to the 3′-Poly(A) tail of mRNA. Direct association of erf3/GSPT with polyadenylate-binding protein. J. Biol. Chem. 274, 16677-16680.
47. Goncalves, I., Duret, L. & Mouchiroud, D. (2000). Nature and structure of human genes that generate retropseudogenes. Genome Res. 10, 672-678.
48. Esnault, C., Maestre, J. & Heidmann, T. (2000). Human LINE retrotransposons generate processed pseudogenes. Nature Genet. 24, 363-367.
49. Feral, C., Guellaen, G. & Pawlak, A. (2001). Human testis expresses a specific poly(A)-binding protein. Nucl. Acids Res. 29, 1872-1883.
50. Okamura, T., Imai, Y., Kon, Y., Goto, M., Yamamoto, M. & Watanabe, T. (2000). Molecular cloning and characterization of mouse testis poly(A) binding protein II encoded by the Pabp3 gene, which trans-complements meiotic mutant sme2 of S. pombe. Biochem. Genet. 38, 1-11.
51. Kleene, K. C., Wang, M. Y., Cutler, M., Hall, C. & Shih, D. (1994). Developmental expression of poly(A) binding protein mRNAs during spermatogenesis in the mouse. Mol. Reprod. Dev. 39, 355-364.
52. Mohr, E., Prakash, N., Vieluf, K., Fuhrmann, C., Buck, F. & Richter, D. (2001). Vasopressin mRNA localization in nerve cells: characterization of cis-acting elements and trans-acting factors. Proc. Natl Acad. Sci. USA, 98, 7072-7079.
53. Alemán, C., Roy-Engel, A. M., Shaikh, T. H. & Deininger, P. L. (2000). cis-Acting influences on Alu RNA levels. Nucl. Acids Res. 28, 4755-4761.
54. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K. (1996). Current Protocols in Molecular Biology, Wiley, Canada.