Enrichment and characterization of PCB-degrading bacteria as potential seed cultures for bioremediation of contaminated soil

Food Technology and Biotechnology

Volumn 45, Issue 1, 2007, Pages 11-20

  Petrić, Ines ^a   Hršak, Dubravka ^a   Fingler, Sanja ^b   Vončina, Ernest ^c   Ćetković, Helena ^a   Kolar, Ana Begonja ^a   Kolić, Nikolina Udiković ^a  

^a RUDER BO KOVI INSTITUTE   (Croatia)

^b INSTITUTE FOR MEDICAL RESEARCH AND OCCUPATIONAL HEALTH   (Croatia)

^c Environmental Protection Institute   (Slovenia)

Author keywords

2,3 dioxygenase activity; 3,4 dioxygenase activity; PCB biodegradation; PCB degrading bacteria; Rhodococcus erythropolis

Indexed keywords

CONTAMINATED SOILS; DEGRADING BACTERIA; ENRICHMENT EXPERIMENTS; MICROCOSM APPROACHES; PCB BIODEGRADATION; POLYCHLORINATED BIPHENYL (PCBS); RHODOCOCCUS ERYTHROPOLIS; TRANSFORMER STATIONS;

BACTERIA; BIODEGRADATION; BIOREMEDIATION; BIOTECHNOLOGY; CULTIVATION; METABOLITES; POLYCHLORINATED BIPHENYLS; SOIL POLLUTION;

ORGANIC POLLUTANTS;

BACTERIA (MICROORGANISMS); RHODOCOCCUS ERYTHROPOLIS;

EID: 33947610807     PISSN: 13309862     EISSN: 13342606     Source Type: Journal    
DOI: None     Document Type: Article

References (36)

1. D.L. Bedard, R.J. Haberl, R.J. May, M.J. Brennan, Evidence for novel mechanisms of polychlorinated biphenyl metabolism in Alcaligenes eutrophus H850, Appl. Environ, Microbiol. 53 (1987) 1103-1112.
2. D.L. Bedard, R.E. Wagner, M.J. Brennan, M.L. Haberl, J.F. Jr. Brown, Extensive degradation of Arodors and environmentally transformed polychlorinated biphenyls by Alcaligenes eutrophus H850, Appl. Environ. Microbiol. 53 (1987) 1094-1102.
3. K.A. Billingsley, S.M. Backus, O.P. Ward, Production of metabolites from chlorobiphenyls by resting cells of Pseudomonas strain LB400 after growth on different carbon sources, Can. J. Microbiol. 45 (1999) 178-184.
4. S. Fedi, M. Carnevali, F. Fava, A. Andracchio, S. Zappoli, D. Zannoni, Polychlorinated biphenyl degradation activities and hybridization analyses of fifteen aerobic strains isolated from a PCB-contaminated site, Res. Microbiol. 152 (2001) 583-592.
5. D.T. Gibson, D.L. Cruden, J.D. Haddock, G.J. Zylstra, J.M. Brandt, Oxidation of polychlorinated biphenyls by Pseudomonas sp. strain LB400 and Pseudomonas pseudoalcaligenes KF707, J. Bacterial. 175 (1993) 4561-1564.
6. H. Nováková, M. Vošahlíková, J. Pazlarová, M. Macková, J. Burkhard, K. Demnerová, PCB metabolism by Pseudomonas sp. P2, Int. Biodeter. Biodegr. 50 (2002) 47-54.
7. D.H. Pieper, Aerobic degradation of polychlorinated biphenyls, Appl. Microbiol. Biotechnol. 67 (2005) 170-191.
8. R. Tandlich, B. Brežná, K. Dercová, The effect of terpene on the biodegradation of polychlorinated biphenyls by Pseudomonas stutzeri, Chemosphere, 44 (2001) 1547-1555.
9. S.Y. Chung, M. Maeda, E. Song, K. Horikoshi, T. Kudo, A Gram-positive polychlorinated biphenyl-degrading bacterium, Rhodococcus erythropolis strain TA421, isolated from termite ecosystem, Biosci. Biotechnol. Biochem. 58 (1994) 2111-2113.
10. D.O. Rybkina, E.G. Plotnikova, L.V. Dorofeeva, Y.L. Mironenko, V.A. Demakov, A new aerobic Gram-positive bacterium with a unique ability to degrade ortho- and pars-chlorinated biphenyls, Microbiology, 6 (2003) 759-765.
11. M.C. Sàágua, G. Vieira, H. Paveia, A. Anselmo, Isolation and preliminary characterization of Bacillus sp. MCS, a Gram-positive 4-chlorobiphenyl degrading bacterium, Int. Biodeter. Biodegr. 42 (1998) 39-43.
12. M. Sakai, S. Ezaki, N. Suzuki, R. Kurane, Isolation and characterization of a novel polychlorinated biphenyl-degrading bacterium, Paenibacillus sp. KBC101, Appl. Microbiol. Biotechnol. 68 (2005) 111-116.
13. M. Seto, K. Kimbara, M. Shimura, T. Hatta, M. Fukuda, K. Yano, A novel transformation of polychlorinated biphenyls by Rhodococcus sp. strain RHA1, Appl. Environ. Microbiol. 61 (1995) 3353-3358.
14. I. Sierra, J.L. Valera, M.L. Marina, F. Laborda, Study of the biodegradation process of polychlorinated biphenyls in liquid medium and soil by new isolated aerobic bacterium (Janibacter sp.), Chemosphere, 33 (2003) 609-618.
15. X. Yang, Y. Sun, S. Qian, Biodegradation of seven polychlorinated biphenyls by a new isolated aerobic bacterium (Rhodococcus sp. RO4), J. Ind. Microbiol. Biotechnol. 31 (2004) 415-120.
16. M. Komancová, I. Jurčová, L. Kochá nková, J. Burkhard, Metabolic pathway of polychlorinated biphenyls degradation by Pseudomonas sp. 2, Chemosphere, 50 (2003) 537-543.
17. M.R. Barton, R.L. Crawford, Novel biotransformations of 4-chlorobiphenyl by a Pseudomonas sp., Appl. Environ. Microbiol. 54 (1998) 594-595.
18. G. Frame, Report: Congener-specific PCB analysis, Anal Chem. News Feat. 69 (1997) 468-475.
19. D.L. Bedard, R. Unterman, L.H. Bopp, M.J. Brennan, M.L. Haberl, C. Johnson, Rapid assay for screening and charac terizing microorganisms for the ability to degrade polychlorinated biphenyls, Appl. Environ. Microbiol. 51 (1986) 761-768.
20. I. Wagner-Döbler, A. Bennasar, M. Vancanneyt, C. Strömpl, I. Brümmer, C. Eichner, I. Grammel, E.R.B. Moore, Microcosm enrichment of biphenyl-degrading microbial communities from soils and sediments, Appl. Environ. Microbiol. 64 (1998) 3014-3022.
21. J. Brousius, M.L. Palmer, P.J. Kennedy, H.F. Noller, Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli, Proc. Natl. Acad. Sci. USA, 75 (1978) 4801-1805.
22. K. Sakaguchi, N. Okino, N. Sueyoshi, H. Izu, M. Ito, Cloning and expression of gene encoding a novel endoglycoceramidase of Rhodococcus sp. strain C9, J. Biochem. 128 (2000) 145-152.
23. J. Sambrook, E.F. Fritsch, T. Maniatis: Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA (1989).
24. D.L. Bedard, M.I. Harbel, Influence of chlorine substitution pattern on the degradation of polychlorinated biphenyl by eight bacterial strains, Microbial Ecol. 20 (1990) 87-102.
25. J. Borja, D.M. Taleon, J. Auresenia, S. Gallardo, Polychlorinated biphenyls and their biodegradation, Process Biochem. 40 (2005) 1999-2013.
26. H. Arai, S. Kosono, K. Taguchi, M. Maeda, E. Song, F. Fuji, S.Y. Chung, T. Kudo, Two sets of biphenyl and PCB degradation genes on a linear plasmid in Rhodococcus erythropolis TA421, J. Ferment. Bioeng. 86 (1998) 595-599.
27. E. Masai, A. Yamada, J.M. Healy, I. Hatta, K. Kimbara, M. Fukuda, K. Yano, Characterization of biphenyl catabolic genes of Gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1, Appl. Environ. Microbiol. 61 (1995) 2079-2085.
28. M. Sakai, K. Miyauchi, N. Kato, E. Masai, M. Fukuda, 2-hydroxypenta-2,4- dienoate metabolic pathway genes in a strong polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1, Appl. Environ. Microbiol. 69 (2003) 427-433.
29. K.S. Bell, J.C. Philip, D.J. Aw, N. Christofi, The genus Rhodococcus, J. Appl. Microbiol. 85 (1998) 195-210.
30. A.W. Warhurst, C.A. Fewson, Biotransformations catalyzed by the genus Rhodococcus, Crit. Rev. Biotechnol. 14 (1994) 29-73.
31. T.R. Neu, Significance of bacterial surface-active compounds in interaction of bacteria with interfaces, Microbiol. Rev. 60 (1996) 151-166.
32. R. Van der Geize, L. Dijkhuizen, Harnessing the catabolic diversity of rhodococci for environmental and biotechnological applications, Curr. Opin. Microbiol. 7 (2004) 255-261.
33. M. Seeger, M. Zielinski, K.N. Timmis, B. Hofer, Regiospecificity of dioxygenation of di- to pentachlorobiphenyls and their degradation to chlorobenzoates by the bph-encoded catabolic pathway of Burkholderia sp. strain LB400, Appl. Environ. Microbiol. 65 (1999) 3614-3621.
34. D. Ahmad, M. Sylvestre, M. Sondossi, R. Massé, Bioconversion of 2-hydroxy-6-oxo-(4'-chlorophenyl)hexa-2,4-dienoic acid, the meta-deavage product of 4-chlorobiphenyl, J. Gen. Microbiol. 137 (1991) 1375-1385.
35. R. Massé, F. Messier, L. Peloquin, C. Ayote, M. Sylvestre, Microbial biodegradation of 4-chlorobiphenyl, a model compound of chlorinated biphenyl, Appl. Environ, Microbiol. 47 (1984) 947-951.
36. S.Y.K. Seah, G. Labbe, S. Nerdinger, M.R. Johnson, V. Snieckus, L.D. Eltis, Identification of a serine hydrolase as a key determinant in the microbial degradation of polychlorinated biphenyls, J. Biol. Chem. 275 (2000) 15701-15708.