Automated reporting from gel-based proteomics experiments using the open source Proteios database application

Proteomics

Volumn 7, Issue 5, 2007, Pages 668-674

  Levander, Fredrik ^a   Krogh, Morten ^a   Wårell, Kristofer ^a   Gärdén, Per ^a   James, Peter ^a   Häkkinen, Jari ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

2 D PAGE; Protein identification; Reporting

Indexed keywords

ARTICLE; AUTOMATION; COMPUTER PROGRAM; CORRELATION ANALYSIS; DATA BASE; ERROR; FALSE NEGATIVE RESULT; FALSE POSITIVE RESULT; INFORMATION PROCESSING; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; PUBLICATION; SEARCH ENGINE; TWO DIMENSIONAL GEL ELECTROPHORESIS;

DATABASES, PROTEIN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; PROTEOMICS; RESEARCH DESIGN; SOFTWARE;

EID: 33947434519     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200600814     Document Type: Article

References (15)

1. Wilkins, M. R., Appel, R. D., Van Eyk, J. E., Chung, M. C. M. et al., Proteomics 2006, 6, 4-8.
2. Gärdén, P., Alm, R., Häkkinen, J., Bioinformatics 2005, 21, 2085-2087.
3. Taylor, C. F., Paton, N. W., Garwood, K. L., Kirby, P. D. et al., Nat. Biotechnol. 2003, 21, 247-254.
4. Clark, T., Martin, S., Liefeld, T., Brief. Bioinform. 2004, 5, 59-70.
5. Samuelsson, J., Dalevi, D., Levander, F., Rögnvaldsson, T., Bioinformatics 2004, 20, 3628-3635.
6. Hunsucker, S. W., Duncan, M. W., Proteomics 2006, 6, 1374-1375.
7. Peng, J. M., Elias, J. E., Thoreen, C. C., Licklider, L. J., Gygi, S. P., J. Proteome Res. 2003, 2, 43-50.
8. Elias, J. E., Haas, W., Faherty, B. K., Gygi, S. P., Nat. Methods 2005, 2, 667-675.
9. Cargile, B. J., Bundy, J. L., Stephenson, J. L., J. Proteome Res. 2004, 3, 1082-1085.
10. Chamrad, D. C., Korting, G., Stuhler, K., Meyer, H. E. et al., Proteomics 2004, 4, 619-628.
11. Kapp, E. A., Schutz, F., Connolly, L. M., Chakel, J. A. et al., Proteomics 2005, 5, 3475-3490.
12. Keller, A., Eng, J., Zhang, N., Li, X.-J., Aebersold, R., Mol. Syst. Biol.2005, 1, msb4100024-E4100021-msb4100024-E4100028.
13. Stephan, C., Reidegeld, K. A., Hamacher, M., van Wall, A. et al., Proteomics 2006, 6, 5015-5029.
14. Benjamini, Y., Hochberg, Y., J. R. Stat. Soc. B 1995, 57, 289-300.
15. Keller, A., Nesvizhskii, A. I., Kolker, E., Aebersold, R., Anal. Chem. 2002, 74, 5383-5392.