Grass consensus STS markers: An efficient approach for detecting polymorphism in Lolium

Theoretical and Applied Genetics

Volumn 107, Issue 6, 2003, Pages 1113-1122

  Lem, Patricia ^a   Lallemand, Joëlle ^a  

^a CEMAGREF   (France)

Author keywords

Consensus marker; Grass species; Intronic polymorphism; Lolium; STS

Indexed keywords

CROPS; DATABASE SYSTEMS; GENES;

GENE STRUCTURE;

BIOMARKERS;

ARTICLE; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; LOLIUM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; SEQUENCE ALIGNMENT;

BASE SEQUENCE; GENETIC MARKERS; LOLIUM; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; SEQUENCE ALIGNMENT;

EMBRYOPHYTA; LOLIUM; POACEAE;

EID: 0142060901     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-003-1308-y     Document Type: Article

References (26)

1. Balfourier F, Charmet G (1994) Geographical patterns of isozyme variation in Mediterranean populations of perennial ryegrass. Heredity 72:55-63
2. Bert PF, Charmet G, Sourdille P, Hayward MD, Balfourier F (1999) A high-density molecular map for ryegrass (Lolium perenne) using AFLP markers. Theor Appl Genet 99:445-452
3. Chalhoub BA, Thibault S, Laucou V, Rameau C, Hofte H, Cousin R (1997) Silver staining and recovery of AFLP amplification products on large denaturing polyacrylamide gels. Biotechniques 22:216-220
4. Chen HB, Martin JM, Lanvin M, Talbert LE (1994) Genetic diversity in hart red spring wheat based on sequence-tagged-site PCR markers. Crop Sci 34:1628-1632
5. Cheung WY, Hubert N, Landry BS (1993) A simple and rapid DNA microextraction method for plant, animal and insects suitable for RAPD and other PCR analyses. PCR Methods Appl 3:69-70
6. Clark AG, Muse SV, Leicht BG (1996) Length variation and secondary structure of introns in the Mlc1 gene in six species of Drosophila. Mol Biol Evol 13:471-482
7. Cosgrove DJ, Bedinger P, Durachko DM (1997) Group I allergens of grass pollen as cell wall-loosening agents. Proc Natl Acad Sci USA 94:6559-6564
8. Frugoli JA, McPeek MA, Thomas TL, McClung CR (1998) Intron loss and gain during evolution of the catalase gene family in angiosperms. Genetics 149:355-365
9. Gaut BS, Peek AS, Morton BR, Clegg MT (1999) Patterns of genetic diversification within the Adh gene family in the grasses (Poaceae). Mol Biol Evol 16:1086-1097
10. Ghareyazie B, Huang N, Second G, Bennett J, Khush GS (1995) Classification of rice germplasm. I. Analysis using ALP and PCR-based RFLP. Theor Appl Genet 91:218-227
11. Gilpin BJ, McCallum JA, Frew TJ, Timmerman-Vaughan GM (1997) A linkage map of the pea (Pisum sativum L.) genome containing cloned sequences of known function and expressed sequence tags (ESTs). Theor Appl Genet 95:1289-1299
12. Greneche M, Lallemand J, Michaud O (1991) Comparaison of different enzyme loci as a means of distinguishing ryegrass varieties by electrophoresis. Seed Sci Technol 19:147-158
13. Hayward MD, McAdam NJ (1977) Isozyme polymorphism as a measure of distinctness and stability in cultivars of L. perenne. Z PflanzenZücht 79:59-68
14. Jones ES, Dupal MP, Kölliker R, Drayton MC, Forster JW (2001) Development and characterisation of simple sequence repeat (SSR) markers for perennial ryegrass (Lolium perenne L.). Theor Appl Genet 102:405-415
15. Jones ES, Mahoney NL, Hayward MD, Armstead IP, Jones JG, Humphreys MO, King IP, Kishida T, Yamada T, Balfourier F, Charmet G, Forster JW (2002) An enhanced molecular marker-based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes. Genome 45:282-295
16. Kirby DA, Muse SV, Stephan W (1995) Maintenance of pre-mRNA secondary structure by epistatic selection. Proc Natl Acad Sci USA 92:9047-9051
17. Kubik C, Meyer WA, Gaut BS (1999) Assessing the abundance and polymorphism of simple sequence repeats in perennial Ryegrass. Crop Sci 39:1136-1141
18. Kubik C, Sawkins M, Meyer WA, Gaut BS (2001) Genetic diversity in seven perennial ryegrass (Lolium perenne L.) cultivars based on SSR markers. Crop Sci 41:1565-1572
19. Lallemand J, Lem P, Ghesquière M, Charmet G, Balfourier F (1998) Potentiality of STSs for variety distinction in ryegrass. In: UPOV (ed) Working group on biochemical and molecular techniques and DNA-profiling in particular. Session 5, Betsville, USA, September 28-30, 1998, BMT/S11
20. Leicht BG, Muse SV, Hanczyc M, Clark AG (1995) Constraints on intron evolution in the gene encoding the myosin alkali light chain in Drosophila. Genetics 139:299-308
21. Mitchell LE, Dennis ES, Peacock WJ (1989) Molecular analysis of an alcohol dehydrogenase (Adh) gene from chromosome 1 of wheat. Genome 32:349-358
22. Rogers SO, Bendich AJ (1988) Extraction of DNA from plant tissues. Plant Mol Biol A6:1-10
23. Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Erlich HA (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487-491
24. Talbert LE, Blake NK, Chee PW, Blake TK, Magyar GM (1994) Evaluation of "sequence-tagged-site" PCR products as molecular markers in wheat. Theor Appl Genet 87:789-794
25. Taylor C, Madsen K, Borg S, Moller MG, Boelt B, Holm PB (2001) The development of sequence-tagged sites (STSs) in Lolium perenne L.: the application of primer sets derived from other genera. Theor Appl Genet 103:648-658
26. Tragoonrung S, Kanazin V, Hayes PM, Blake TK (1992) Sequence-tagged-site-facilitated PCR for barley genome mapping. Theor Appl Genet 84:1002-1008