Identification of QTLs associated with physiological nitrogen use efficiency in rice

Molecules and Cells

Volumn 23, Issue 1, 2007, Pages 72-79

  Cho, Young Il ^a   Jiang, Wenzhu ^a   Chin, Joong Hyoun ^a   Piao, Zhongze ^b   Cho, Yong Gu ^c   McCouch, Susan R ^d   Koh, Hee Jong ^a  

^a Seoul National University   (South Korea)

^b INSTITUTE OF EDIBLE FUNGI   (China)

^c Cornell University ^*  (United States)

^d Chungbuk National University   (South Korea)

Author keywords

Epistasis; Physiological nitrogen use efficiency; QTL; Rice

Indexed keywords

NITROGEN;

ARTICLE; CONTROLLED STUDY; CORRELATION FUNCTION; GENETIC EPISTASIS; GENOTYPE; GRAIN YIELD; HARVEST INDEX; HEREDITY; NITROGEN CONCENTRATION; NITROGEN UTILIZATION; NONHUMAN; PHENOTYPIC VARIATION; PLANT GENETICS; QUANTITATIVE TRAIT LOCUS; QUANTITATIVE TRAIT LOCUS MAPPING; RECOMBINANT INBRED STRAIN; RICE; SHOOT; STRAW;

CHROMOSOME MAPPING; EPISTASIS, GENETIC; FERTILIZERS; GENETIC MARKERS; INBREEDING; NITROGEN; ORYZA SATIVA; POLYMORPHISM, GENETIC; QUANTITATIVE TRAIT LOCI; QUANTITATIVE TRAIT, HERITABLE;

JAPONICA;

EID: 33947366383     PISSN: 10168478     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (43)

1. Agrama, H. A. S., Zakaria, A. G., Said, F. B., and Tuinstra, M. (1999) Identification of quantitative trait loci for nitrogen use efficiency in maize. Mol. Breed. 5, 187-195.
2. Broadbent, F. E., De Datta S. K., and Laureles, E. V. (1987) Measurement of nitrogen use efficiency in rice genotype. Agron. J. 79, 786-791.
3. Cai, W. and Morishima, H. (2002) QTL clusters reflect character associations in wild and cultivated rice. Theor. Appl. Genet. 104, 1217-1228.
4. Cao, G., Zhu, J., He, C., Gao, Y., Yan, J., et al. (2001) Impact of epistasis and QTLxenvironment interaction on the developmental behavior of plant height in rice (Oryza sativa L.). Theor. Appl. Genet. 103, 153-160.
5. Cassman, K. G., Peng, S., Olk, D. C., Ladha, J. K., Reichardt, W., et al. (1998) Opportunities for increased nitrogen use efficiency from improved resource management in irrigated rice systems. Field Crops Res. 56, 7-39.
6. Causse, M. A., Fulton, T. M., Cho, Y. G., Ahn, S. N., Chunwongse, J., et al. (1994) Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138, 1251-1274.
7. Cho, Y. I. (1999) Variations of nitrogen use efficiency in rice varieties. MS thesis, Graduate School, Seoul National University.
8. Cho, Y. I. and Koh, H. J. (2005) Genotypic variation of physiological nitrogen use efficiency and its relationship with agronomic characters in rice. Korean J. Breed. 37, 311-318.
9. Conway, G. R. and Pretty, J. N. (1988) Fertilizer risks in developing countries. Nature 334, 207-208.
10. De Datta, S. K. and Broadbent, F. E. (1990) Nitrogen N-use efficiency of 24 rice genotypes on N-deficient soil. Field Crops Res. 23, 81-92.
11. Eghball, B. and Maranville, J. W. (1991) Interactive effects of water and nitrogen stresses on nitrogen utilization efficiency, leaf water status and yield of corn geontypes. Commun. Soil Sci. Plant Anal. 22, 1367-1382.
12. 2 Populations of Maize. Crop Sci. 39, 346-352.
13. Fang, P. and Wu, P. (2001) QTL x N-level interaction for plant height in rice (Oryza sativa L.). Plant Soil 236, 237-242.
14. Goodroad, L. L. and Jellum, M. D. (1988) Effect of N fertilizer rate and soil pH on N efficiency in corn. Plant Soil 106, 85-89.
15. 2 population. Genetics 148, 479-494.
16. Hirel, B., Bertin, P., Quillere, I., Bourdoncle, W., Attagnant, C., et al. (2001) Towards a better understanding of the genetic and physiological basis for nitrogen use efficiency in maize. Plant Physiol. 125, 1258-1270.
17. Hittalmani, S., Shashidhar, H. E., Bagali, P. G., Huang, N., Sidhu, J. S., et al. (2002) Molecular mapping of quantitative trait loci for plant growth, yield and yield related traits across three diverse locations in a doubled haploid rice population. Euphytica 125, 207-214.
18. Hu, B., Wu, P., Liao, C. Y., Zhang, W. P., and Ni, J. J. (2001) QTLs and epistasis underlying activity of acid phosphatase under phosphorus sufficient and deficient condition in rice (Oryza sativa L.). Plant Soil 230, 99-105.
19. Humphries, E. C. (1956) Mineral components and ash analysis. Soil Sci. 100, 112-117.
20. Ishimaru, K., Kobayashi, N., Ono, K., Yano, M., and Ohsugi, R. (2001) Are contents of Rubisco, soluble protein and nitrogen in flag leaves of rice controlled by the same genetics? J. Exp. Bot. 52, 1827-1833.
21. Kang, H. J., Cho, Y. G., Lee, Y. T., Eun, M. Y., and Shim, J. U. (1998) QTL mapping of genes conferring days to heading, culm length and panicle length based on molecular map of rice (Oryza sativa L.). RDA. J. Crop Sci. 40, 55-61.
22. Kundu, D. K. and Pillai, K. G. (1992) Integrated nutrient supply system in rice and rice based cropping systems. Fertilizer News 37, 35-41.
23. Li, Z. S., Pinson, R. M., Stansel, J. W., and Park, D. (1995) Identification of two major genes and quantitative trait loci (QTLs) for heading date and plant height in cultivated rice (Oryza sativa L.). Theor. Appl. Genet. 91, 371-381.
24. Li, Z., Ping, M., Chunping, L., Zhang, H. L., Li, Z. K., et al. (2005) QTL mapping of root traits in a doubled haploid population from a cross between upland and lowland japonica rice in three environments. Theor. Appl. Genet. 110, 1244-1252.
25. Lian, X., Xing, Y., Yan, H., Xu, C., Li, X., et al. (2005) QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid. Theor. Appl. Genet. 112, 85-96.
26. Lincoln, S., Daly, M., and Lander, E. (1992) Constructing genetics maps with MAPMAKER/EXP 3.0. Whitehead Institute Technical Report, Whitehead Institute, Cambridge, Massachusetts, USA.
27. Loudet, O., Chaillou, S., Merigout, P., Talbotec, J., and Daniel, V. F. (2003) Quantitative trait loci analysis of nitrogen use efficiency in Arabidopsis. Plant Physiol. 131, 345-358.
28. McCouch, S. R., Cho, Y. G., Yano, M., Paul, E., Blinstrub, M., et al. (1997) Report on QTL nomenclature. Rice Gente. Newslett. 14, 11-13.
29. Moll, R. H., Kamprath, E. J., and Jackson, W. A. (1982) Analysis and interpretation of factors which contribute to efficiency of nitrogen utilization. Agron. J. 74, 526-564.
30. 3-N in the stalks. Maydica 32, 309-323.
31. Nelson, J. C. (1997) QGENE: software for marker-based genomic analysis and breeding. Molecular Breeding 3, 239-245.
32. Park, H. and Mok, S. K. (1975) Nitrogen efficiency and its relation to various physiological characteristics among rice varieties. J. Korean Agric. Chem. Soc. 8, 105-111.
33. 15N fertilizer in fields. J. Korean Agric. Chem. Soc. 25, 30-34.
34. Piao, Z., Cho, Y. I., and Koh, H. J. (2001) Inheritance of physiological nitrogen-use efficiency and relationship among its associated charaters in rice. Korean J. Breed. 33, 332-337.
35. Seo, J. H, Lee, H. J., and Lee, S. H. (2005) Improvement of nitrogen efficiency by N application at early tillering stage in direct-seeded rice. Korean J. Crop Sci. 50, 16-21.
36. 2 population between Japonica rices. Korean J. Genetics 23, 401-406.
37. Teyker, R. H., Moll, R. H., and Jackson, W. A. (1989) Divergent selection among maize seedlings for nitrate uptake. Crop Sci. 29, 879-884.
38. Wan, W. Y., Wan, J. M., Weng, J. F., Jiang, L., Bi, J. C., et al. (2005) Stability of QTLs for rice grain dimension and endosperm chalkiness characteristics across eight environments. Theor. Appl. Genet. 110, 1334-1346.
39. Wang, D. L., Zhu, J., Li, Z. K., and Paterson, A. H. (1999) Mapping QTLs with epistatic effects and QTLxenvironment interactions by mixed linear model approaches. Theor. Appl. Genet. 99, 1255-1264.
40. Wu, P., Liao, C. Y., Hu, B., Yi, K. K., Jin, W. Z., et al. (2000) QTLs and epistasis for aluminum tolerance in rice (Oryza sativa L.). Theor. Appl. Genet. 100, 1295-1303.
41. Xiao, J., Li, J., and Tanksley, D. D. (1996) Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific rice cross. Theor. and Appl. Genet. 92, 230-244.
42. Xing, Y. Z., Tan, Y. F., Hua, J. P., Sun, X. I., Xu, C., et al. (2002) Characterization of the main effects, epistatic effects and their environment interacations of QTLs on the genetic basis of yield traits in rice. Theor. Appl. Genet. 105, 248-257.
43. Zhuang, J. Y., Lin, H. X., Lu, J., Qian, H. R., Hittalmani, S., et al. (1997) Analysis of QTL by environment interaction for yield components and plant height in rice. Theor. Appl. Genet. 95, 799-808.