Pseudoxanthomonas yeongjuensis sp. nov., isolated from soil cultivated with Korean ginseng

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 3, 2007, Pages 646-649

  Yoo, Seung Hee ^a   Weon, Hang Yeon ^b   Kim, Byung Yong ^a   Kim, Jin Ho ^b   Baek, Youn Kyung ^a   Kwon, Soon Wo ^a   Go, Seung Joo ^a   Stackebrandt, Erko ^c  

^a National Institute of Agricultural Science   (South Korea)

^b National Institute of Animal Science   (South Korea)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FATTY ACID; GENOMIC DNA; RNA 16S; SODIUM CHLORIDE; UBIQUINONE DERIVATIVE;

ARTICLE; BACTERIAL GENETICS; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHEMOTAXONOMY; CULTIVATED LAND; DNA CONTENT; GENE SEQUENCE; GINSENG; GRAM NEGATIVE AEROBIC RODS AND COCCI; KOREA; MICROBIAL MORPHOLOGY; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; PSEUDOXANTHOMONAS; PSEUDOXANTHOMONAS YEONGJUENSIS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOIL MICROFLORA; STRAIN DIFFERENCE; TYPE STRAIN; XANTHOMONADACEAE;

DNA, BACTERIAL; DNA, RIBOSOMAL; KOREA; MOLECULAR SEQUENCE DATA; PANAX; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY; XANTHOMONADACEAE;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PANAX GINSENG; PSEUDOXANTHOMONAS;

EID: 33947325813     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64427-0     Document Type: Article

References (19)

1. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., Struhl, K (editors) (1987). Current Protocols in Molecular Biology. New York: Greene/Wiley Interscience.
2. Chang, J S., Chou, C. L., Lin, G. H., Sheu, S. Y. & Chen, W. M. (2005). Pseudoxanthomonas kaohsiungensis, sp. nov., a novel bacterium isolated from oil-polluted site produces extracellular surface activity. Syst Appl Microbiol 28, 137-144.
3. 2O-producing species isolated from hot springs. Int J Syst Evol Microbiol 52, 2155-2161.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. 2O-producing Xanthomonas-like isolates from biofilters as Stenotrophomonas nitritireducens sp. nov., Luteimonas mephitis gen. nov., sp. nov. and Pseudoxanthomonas broegbernensis gen. nov., sp. nov. Int J Syst Evol Microbiol 50, 273-282.
6. Garrity, G. M. & Holt, J. G. (2001). The roadmap to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 119-166. Edited by G. M. Garrity, D. R. Boone & R. W. Castenholz. New York: Springer.
7. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
8. Harada, R. M., Campbell, S. & Li, Q. X. (2006). Pseudoxanthomonas kalamensis sp. nov., a novel gammaproteobacterium isolated from Johnston Atoll, North Pacific Ocean. Int J Syst Evol Microbiol 56, 1103-1107.
9. Hiraishi, A. (1992). Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification. Lett Appl Microbiol 15, 210-213.
10. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
11. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
12. Kwon, S. W., Kim, J. S., Park, I. C., Yoon, S. H., Park, D. H., Lim, C. K. & Go, S. J. (2003). Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea. Int J Syst Evol Microbiol 53, 21-27.
13. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. Technical Note no. 101. Newark, DE: MIDI Inc.
16. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
17. Thierry, S., Macarie, H., Iizuka, T., Geißdörfer, W., Assih, E. A., Spanevello, M., Verhe, F., Thomas, P., Fudou, R. & other authors (2004). Pseudoxanthomonas mexicana sp. nov. and Pseudoxanthomonas japonensis sp. nov., isolated from diverse environments, and emended descriptions of the genus Pseudoxanthomonas Finkmann et al. 2000 and of its type species. Int J Syst Evol Microbiol 54, 2245-2255.
18. Weon, H. Y., Kim, B. Y., Kim, J. S., Lee, S. Y., Cho, Y. H., Go, S. J., Hong, S. B., Im, W. T. & Kwon, S. W. (2006). Pseudoxanthomonas suwonensis sp. nov., isolated from cotton waste composts. Int J Syst Evol Microbiol 56, 659-662.
19. Yang, D.-C., Im, W.-T., Kim, M. K. & Lee, S.-T. (2005). Pseudoxanthomonas koreensis sp. nov. and Pseudoxanthomonas daeJeonensis sp. nov. Int J Syst Evol Microbiol 55, 787-791.