-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0019602853
-
Multiple pathways of RNA processing and decay for the major leftward N-independent RNA transcript of coliphage lambda
-
Anevski, P.J., and Lozeron, H.A. (1981) Multiple pathways of RNA processing and decay for the major leftward N-independent RNA transcript of coliphage lambda. Virology 113: 39-53.
-
(1981)
Virology
, vol.113
, pp. 39-53
-
-
Anevski, P.J.1
Lozeron, H.A.2
-
3
-
-
0000832129
-
Evolution of the lambdoid phages
-
Hendrix, R.W, Roberts, J.W, Stahl, F.W, and Weisberg, R.A, eds, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory, pp
-
Campbell, A., and Botstein, D. (1983) Evolution of the lambdoid phages. In Lambda II. Hendrix, R.W., Roberts, J.W., Stahl, F.W., and Weisberg, R.A. (eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory, pp. 365-380.
-
(1983)
Lambda II
, pp. 365-380
-
-
Campbell, A.1
Botstein, D.2
-
4
-
-
0027173716
-
Highly cooperative DNA binding by the coliphage HK022 repressor
-
Carlson, N.G., and Little, J.W. (1993a) Highly cooperative DNA binding by the coliphage HK022 repressor. J Mol Biol 230: 1108-1130.
-
(1993)
J Mol Biol
, vol.230
, pp. 1108-1130
-
-
Carlson, N.G.1
Little, J.W.2
-
5
-
-
0027482763
-
A novel antivirulence element in the temperate bacteriophage HK022
-
Carlson, N.G., and Little, J.W. (1993b) A novel antivirulence element in the temperate bacteriophage HK022. J Bacteriol 175: 7541-7549.
-
(1993)
J Bacteriol
, vol.175
, pp. 7541-7549
-
-
Carlson, N.G.1
Little, J.W.2
-
6
-
-
2342567009
-
The chromosome of Shigella flexneri bacteriophage Sf6: Complete nucleotide sequence, genetic mosaicism, and DNA packaging
-
Casjens, S., Winn-Stapley, D.A., Gilcrease, E.B., Morona, R., Kühlewein, C., Chua, J.E.H., et al. (2004) The chromosome of Shigella flexneri bacteriophage Sf6: complete nucleotide sequence, genetic mosaicism, and DNA packaging. J Mol Biol 339: 379-394.
-
(2004)
J Mol Biol
, vol.339
, pp. 379-394
-
-
Casjens, S.1
Winn-Stapley, D.A.2
Gilcrease, E.B.3
Morona, R.4
Kühlewein, C.5
Chua, J.E.H.6
-
7
-
-
0027249769
-
Mutational analysis of a ribonuclease III processing signal
-
Chelladurai, B., Li, H., Zhang, K., and Nicholson, A.W. (1993) Mutational analysis of a ribonuclease III processing signal. Biochemistry 32: 7549-7558.
-
(1993)
Biochemistry
, vol.32
, pp. 7549-7558
-
-
Chelladurai, B.1
Li, H.2
Zhang, K.3
Nicholson, A.W.4
-
8
-
-
33645827531
-
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach
-
Chen, S.L., Hung, C.S., Xu, J., Reigstad, C.S., Magrini, V., Sabo, A., et al. (2006) Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc Natl Acad Sci USA 103: 5977-5982.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 5977-5982
-
-
Chen, S.L.1
Hung, C.S.2
Xu, J.3
Reigstad, C.S.4
Magrini, V.5
Sabo, A.6
-
9
-
-
0035943385
-
Nucleotide sequence of coliphage HK620 and the evolution of lambdoid phages
-
Clark, A.J., Inwood, W., Cloutier, T., and Dhillon, T.S. (2001) Nucleotide sequence of coliphage HK620 and the evolution of lambdoid phages. J Mol Biol 311: 657-679.
-
(2001)
J Mol Biol
, vol.311
, pp. 657-679
-
-
Clark, A.J.1
Inwood, W.2
Cloutier, T.3
Dhillon, T.S.4
-
10
-
-
0019152314
-
Temperate coliphages: Classification and correlation with habitats
-
Dhillon, E.K.S., Dhillon, T.S., Lam, Y.Y., and Tsang, A.H.C. (1980) Temperate coliphages: classification and correlation with habitats. Appl Environ Microbiol 39: 1046-1053.
-
(1980)
Appl Environ Microbiol
, vol.39
, pp. 1046-1053
-
-
Dhillon, E.K.S.1
Dhillon, T.S.2
Lam, Y.Y.3
Tsang, A.H.C.4
-
12
-
-
1042278041
-
Cooperativity in long-range gene regulation by the γ CI repressor
-
Dodd, I.B., Shearwin, K.E., Perkins, A.J., Burr, T., Hochschild, A., and Egan, J.B. (2004) Cooperativity in long-range gene regulation by the γ CI repressor. Genes Dev 18: 344-354.
-
(2004)
Genes Dev
, vol.18
, pp. 344-354
-
-
Dodd, I.B.1
Shearwin, K.E.2
Perkins, A.J.3
Burr, T.4
Hochschild, A.5
Egan, J.B.6
-
13
-
-
0014526650
-
Strains of phage lambda in current use
-
Dove, W.F. (1969) Strains of phage lambda in current use. Virology 38: 349-351.
-
(1969)
Virology
, vol.38
, pp. 349-351
-
-
Dove, W.F.1
-
14
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing, B., and Green, P. (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8: 186-194.
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
15
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing, B., Hillier, L., Wendl, M.C., and Green, P. (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185.
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
16
-
-
0022354895
-
N' transcription antitermination proteins of bacteriophages lambda, phi 21 and P22
-
Franklin, N.C. (1985a) 'N' transcription antitermination proteins of bacteriophages lambda, phi 21 and P22. J Mol Biol 181: 85-91.
-
(1985)
J Mol Biol
, vol.181
, pp. 85-91
-
-
Franklin, N.C.1
-
17
-
-
0022368688
-
Conservation of genome form but not sequence in the transcription antitermination determinants of bacteriophages lambda, phi 21 and P22
-
Franklin, N.C. (1985b) Conservation of genome form but not sequence in the transcription antitermination determinants of bacteriophages lambda, phi 21 and P22. J Mol Biol 181: 75-84.
-
(1985)
J Mol Biol
, vol.181
, pp. 75-84
-
-
Franklin, N.C.1
-
18
-
-
0026622091
-
The carboxy-terminal 14 amino acids of phage lambda N protein are dispensable for transcription antitermination
-
Franklin, N.C. (1992) The carboxy-terminal 14 amino acids of phage lambda N protein are dispensable for transcription antitermination. J Bacteriol 174: 8144-8147.
-
(1992)
J Bacteriol
, vol.174
, pp. 8144-8147
-
-
Franklin, N.C.1
-
19
-
-
2442595009
-
Morphing molecular specificities between Arm-peptide and NUT-RNA in the antitermination complexes of bacteriophages lambda and P22
-
Franklin, N.C. (2004) Morphing molecular specificities between Arm-peptide and NUT-RNA in the antitermination complexes of bacteriophages lambda and P22. Mol Microbiol 52: 815-822.
-
(2004)
Mol Microbiol
, vol.52
, pp. 815-822
-
-
Franklin, N.C.1
-
20
-
-
0002356947
-
Lytic mode of lambda development
-
Hendrix, R.W, Roberts, J.W, Stahl, F.W, and Weisberg, R.A, eds, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory, pp
-
Friedman, D., and Gottesman, M. (1983) Lytic mode of lambda development. In Lambda II. Hendrix, R.W., Roberts, J.W., Stahl, F.W., and Weisberg, R.A. (eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory, pp. 21-51.
-
(1983)
Lambda II
, pp. 21-51
-
-
Friedman, D.1
Gottesman, M.2
-
21
-
-
0020806302
-
Evidence that a nucleotide sequence, 'boxA', is involved in the action of the NusA protein
-
Friedman, D.I., and Olson, E.R. (1983) Evidence that a nucleotide sequence, 'boxA', is involved in the action of the NusA protein. Cell 34: 143-149.
-
(1983)
Cell
, vol.34
, pp. 143-149
-
-
Friedman, D.I.1
Olson, E.R.2
-
22
-
-
0025359549
-
Integration host factor stimulates the phage lambda pL promoter
-
Giladi, H., Gottesman, M., and Oppenheim, A.B. (1990) Integration host factor stimulates the phage lambda pL promoter. J Mol Biol 213: 109-121.
-
(1990)
J Mol Biol
, vol.213
, pp. 109-121
-
-
Giladi, H.1
Gottesman, M.2
Oppenheim, A.B.3
-
25
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon, D., Abajian, C., and Green, P. (1998) Consed: a graphical tool for sequence finishing. Genome Res 8: 195-202.
-
(1998)
Genome Res
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
26
-
-
0032516815
-
rut sites in the nascent transcript mediate rho-dependent transcription termination in vivo
-
Graham, J.E., and Richardson, J.P. (1998) rut sites in the nascent transcript mediate rho-dependent transcription termination in vivo. J Biol Chem 273: 20764-20769.
-
(1998)
J Biol Chem
, vol.273
, pp. 20764-20769
-
-
Graham, J.E.1
Richardson, J.P.2
-
27
-
-
0023432668
-
Translational polarity of a mutation in the initiator AUG codon of the lambda cI gene
-
Gussin, G.N., Brown, S., and Matz, K. (1987) Translational polarity of a mutation in the initiator AUG codon of the lambda cI gene. Genetics 117: 173-179.
-
(1987)
Genetics
, vol.117
, pp. 173-179
-
-
Gussin, G.N.1
Brown, S.2
Matz, K.3
-
28
-
-
0035961748
-
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
-
Hayashi, T., Makino, K., Ohnishi, M., Kurokawa, K., Ishii, K., Yokoyama, K., et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res 8: 11-22.
-
(2001)
DNA Res
, vol.8
, pp. 11-22
-
-
Hayashi, T.1
Makino, K.2
Ohnishi, M.3
Kurokawa, K.4
Ishii, K.5
Yokoyama, K.6
-
29
-
-
0026463890
-
Bacteriophage lambda PaPa: Not the mother of all lambda phages
-
Hendrix, R.W., and Duda, R.L. (1992) Bacteriophage lambda PaPa: not the mother of all lambda phages. Science 258: 1145-1148.
-
(1992)
Science
, vol.258
, pp. 1145-1148
-
-
Hendrix, R.W.1
Duda, R.L.2
-
30
-
-
0033514996
-
Evolutionary relationships among diverse bacteriophages and prophages: All the world's a phage
-
Hendrix, R.W., Smith, M.C., Burns, R.N., Ford, M.E., and Hatfull, G.F. (1999) Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc Natl Acad Sci USA 96: 2192-2197.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 2192-2197
-
-
Hendrix, R.W.1
Smith, M.C.2
Burns, R.N.3
Ford, M.E.4
Hatfull, G.F.5
-
31
-
-
0028919939
-
Bulged-out nucleotides protect an antisense RNA from RNase III cleavage
-
Hjalt, T.Å.H., and Wagner, E.G.H. (1995) Bulged-out nucleotides protect an antisense RNA from RNase III cleavage. Nucleic Acids Res 23: 571-579.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 571-579
-
-
Hjalt, T.A.H.1
Wagner, E.G.H.2
-
32
-
-
0025063058
-
Role of the Cro repressor carboxy-terminal domain and flexible dimer linkage in operator and nonspecific DNA binding
-
Hubbard, A.J., Bracco, L.P., Eisenbeis, S.J., Gayle, R.B., Beaton, G., and Caruthers, M.H. (1990) Role of the Cro repressor carboxy-terminal domain and flexible dimer linkage in operator and nonspecific DNA binding. Biochemistry 29: 9241-9249.
-
(1990)
Biochemistry
, vol.29
, pp. 9241-9249
-
-
Hubbard, A.J.1
Bracco, L.P.2
Eisenbeis, S.J.3
Gayle, R.B.4
Beaton, G.5
Caruthers, M.H.6
-
33
-
-
0034716946
-
Genomic sequences of bacteriophages HK97 and HK022: Pervasive genetic mosaicism in the lambdoid bacteriophages
-
Juhala, R.J., Ford, M.E., Duda, R.L., Youlton, A., Hatfull, G.F., and Hendrix, R.W. (2000) Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages. J Mol Biol 299: 27-51.
-
(2000)
J Mol Biol
, vol.299
, pp. 27-51
-
-
Juhala, R.J.1
Ford, M.E.2
Duda, R.L.3
Youlton, A.4
Hatfull, G.F.5
Hendrix, R.W.6
-
34
-
-
0001663180
-
Recombination between related temperate bacteriophages and the genetic control of immunity and prophage localization
-
Kaiser, A.D., and Jacob, F. (1957) Recombination between related temperate bacteriophages and the genetic control of immunity and prophage localization. Virology 4: 509-521.
-
(1957)
Virology
, vol.4
, pp. 509-521
-
-
Kaiser, A.D.1
Jacob, F.2
-
35
-
-
0345493827
-
Characterization of wild lambdoid bacteriophages: Detection of a wide distribution of phage immunity groups and identification of a Nusdependent, nonlambdoid phage group
-
Kameyama, L., Fernández, L., Calderón, J., Ortiz-Rojas, A., and Patterson, T.A. (1999) Characterization of wild lambdoid bacteriophages: detection of a wide distribution of phage immunity groups and identification of a Nusdependent, nonlambdoid phage group. Virology 263: 100-111.
-
(1999)
Virology
, vol.263
, pp. 100-111
-
-
Kameyama, L.1
Fernández, L.2
Calderón, J.3
Ortiz-Rojas, A.4
Patterson, T.A.5
-
36
-
-
0345097582
-
Suppression of factor-dependent transcription termination by antiterminator RNA
-
King, R.A., and Weisberg, R.A. (2003) Suppression of factor-dependent transcription termination by antiterminator RNA. J Bacteriol 185: 7085-7091.
-
(2003)
J Bacteriol
, vol.185
, pp. 7085-7091
-
-
King, R.A.1
Weisberg, R.A.2
-
37
-
-
15444369858
-
Quantitative kinetic analysis of the bacteriophage γ genetic network
-
Kobiler, O., Rokney, A., Friedman, N., Court, D.L., Stavans, J., and Oppenheim, A.B. (2005) Quantitative kinetic analysis of the bacteriophage γ genetic network. Proc Natl Acad Sci USA 102: 4470-4475.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 4470-4475
-
-
Kobiler, O.1
Rokney, A.2
Friedman, N.3
Court, D.L.4
Stavans, J.5
Oppenheim, A.B.6
-
38
-
-
0017245444
-
New lambdoid Escherichia coli phages. I. Isolation, group immunity and recombination with lambda phage
-
Krylov, V.N., and Tsygankov, I.D. (1976) New lambdoid Escherichia coli phages. I. Isolation, group immunity and recombination with lambda phage. Genetika 12: 104-111.
-
(1976)
Genetika
, vol.12
, pp. 104-111
-
-
Krylov, V.N.1
Tsygankov, I.D.2
-
39
-
-
0010613532
-
Genetic studies of lysogenicity in Escherichia coli
-
Lederberg, E.M., and Lederberg, J. (1953) Genetic studies of lysogenicity in Escherichia coli. Genetics 38: 51-64.
-
(1953)
Genetics
, vol.38
, pp. 51-64
-
-
Lederberg, E.M.1
Lederberg, J.2
-
40
-
-
0017347576
-
Increased reproductive fitness of Escherichia coli lambda lysogens
-
Lin, L., Bitner, R., and Edlin, G. (1977) Increased reproductive fitness of Escherichia coli lambda lysogens. J Virol 21: 554-559.
-
(1977)
J Virol
, vol.21
, pp. 554-559
-
-
Lin, L.1
Bitner, R.2
Edlin, G.3
-
41
-
-
0018937603
-
Isolation of recombinant plasmids and phage carrying the lexA gene of Escherichia coli K-12
-
Little, J.W. (1980) Isolation of recombinant plasmids and phage carrying the lexA gene of Escherichia coli K-12. Gene 10: 237-247.
-
(1980)
Gene
, vol.10
, pp. 237-247
-
-
Little, J.W.1
-
42
-
-
0343188817
-
Autodigestion of lexA and phage lambda repressors
-
Little, J.W. (1984) Autodigestion of lexA and phage lambda repressors. Proc Natl Acad Sci USA 81: 1375-1379.
-
(1984)
Proc Natl Acad Sci USA
, vol.81
, pp. 1375-1379
-
-
Little, J.W.1
-
43
-
-
33947327543
-
Gene regulatory circuitry of phage γ
-
2nd edn. Calendar, R, ed, Oxford: University Press, New York, pp
-
Little, J.W. (2006) Gene regulatory circuitry of phage γ. In The Bacteriophages, 2nd edn. Calendar, R. (ed.). Oxford: University Press, New York, pp. 74-82.
-
(2006)
The Bacteriophages
, pp. 74-82
-
-
Little, J.W.1
-
44
-
-
0020316054
-
The SOS regulatory system of Escherichia coli
-
Little, J.W., and Mount, D.W. (1982) The SOS regulatory system of Escherichia coli. Cell 29: 11-22.
-
(1982)
Cell
, vol.29
, pp. 11-22
-
-
Little, J.W.1
Mount, D.W.2
-
45
-
-
0033517148
-
Robustness of a gene regulatory circuit
-
Little, J.W., Shepley, D.P., and Wert, D.W. (1999) Robustness of a gene regulatory circuit. EMBO J 18: 4299-4307.
-
(1999)
EMBO J
, vol.18
, pp. 4299-4307
-
-
Little, J.W.1
Shepley, D.P.2
Wert, D.W.3
-
46
-
-
0036193882
-
Crossing over between regions of limited homology in Escherichia coli: RecA-dependent and RecA-independent pathways
-
Lovett, S.T., Hurley, R.L., Sutera, V.A., Jr, Aubuchon, R.H., and Lebedeva, M.A. (2002) Crossing over between regions of limited homology in Escherichia coli: RecA-dependent and RecA-independent pathways. Genetics 160: 851-859.
-
(2002)
Genetics
, vol.160
, pp. 851-859
-
-
Lovett, S.T.1
Hurley, R.L.2
Sutera Jr, V.A.3
Aubuchon, R.H.4
Lebedeva, M.A.5
-
47
-
-
0017774371
-
Antitermination and absence of processing of the leftward transcript of coliphage lambda in the RNAase III-deficient host
-
Lozeron, H.A., Anevski, P.J., and Apirion, D. (1977) Antitermination and absence of processing of the leftward transcript of coliphage lambda in the RNAase III-deficient host. J Mol Biol 109: 359-365.
-
(1977)
J Mol Biol
, vol.109
, pp. 359-365
-
-
Lozeron, H.A.1
Anevski, P.J.2
Apirion, D.3
-
48
-
-
33947331039
-
-
Maddison, D.R, and Maddison, W.P, 2002 Macclade 4: Analysis of Phylogeny and Character Evolution, Version 4.05. Sunderland, MA: Sinauer Associates
-
Maddison, D.R., and Maddison, W.P. (2002) Macclade 4: Analysis of Phylogeny and Character Evolution, Version 4.05. Sunderland, MA: Sinauer Associates.
-
-
-
-
49
-
-
33750420023
-
The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria
-
Makarova, K.S., Grishin, N.V., and Koonin, E.V. (2006) The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria. Bioinformatics 22: 2581-2584.
-
(2006)
Bioinformatics
, vol.22
, pp. 2581-2584
-
-
Makarova, K.S.1
Grishin, N.V.2
Koonin, E.V.3
-
50
-
-
0028121003
-
Cooperative DNA-protein interactions: Effects of changing the spacing between adjacent binding sites
-
Mao, C., Carlson, N.G., and Little, J.W. (1994) Cooperative DNA-protein interactions: effects of changing the spacing between adjacent binding sites. J Mol Biol 235: 532-544.
-
(1994)
J Mol Biol
, vol.235
, pp. 532-544
-
-
Mao, C.1
Carlson, N.G.2
Little, J.W.3
-
51
-
-
24944550880
-
Positive autoregulation of cI is a dispensable feature of the phage γ gene regulatory circuitry
-
Michalowski, C.B., and Little, J.W. (2005) Positive autoregulation of cI is a dispensable feature of the phage γ gene regulatory circuitry. J Bacteriol 187: 6430-6442.
-
(2005)
J Bacteriol
, vol.187
, pp. 6430-6442
-
-
Michalowski, C.B.1
Little, J.W.2
-
53
-
-
0031614914
-
Independent ligand-induced folding of the RNA-binding domain and two functionally distinct antitermination regions in the phage lambda N protein
-
Mogridge, J., Legault, P., Li, J., Van O.M., Kay, L.E., and Greenblatt, J. (1998) Independent ligand-induced folding of the RNA-binding domain and two functionally distinct antitermination regions in the phage lambda N protein. Mol Cell 1: 265-275.
-
(1998)
Mol Cell
, vol.1
, pp. 265-275
-
-
Mogridge, J.1
Legault, P.2
Li, J.3
Van, O.M.4
Kay, L.E.5
Greenblatt, J.6
-
54
-
-
0032570059
-
Arrangement and functional identification of genes in the regulatory region of lambdoid phage H-19B, a carrier of a Shiga-like toxin
-
Neely, M.N., and Friedman, D.I. (1998) Arrangement and functional identification of genes in the regulatory region of lambdoid phage H-19B, a carrier of a Shiga-like toxin. Gene 223: 105-113.
-
(1998)
Gene
, vol.223
, pp. 105-113
-
-
Neely, M.N.1
Friedman, D.I.2
-
55
-
-
0034533887
-
N-mediated transcription antitermination in lambdoid phage H-19B is characterized by alternative NUT RNA structures and a reduced requirement for host factors
-
Neely, M.N., and Friedman, D.I. (2000) N-mediated transcription antitermination in lambdoid phage H-19B is characterized by alternative NUT RNA structures and a reduced requirement for host factors. Mol Microbiol 38: 1074-1085.
-
(2000)
Mol Microbiol
, vol.38
, pp. 1074-1085
-
-
Neely, M.N.1
Friedman, D.I.2
-
56
-
-
0036668461
-
Transcription termination and anti-termination in E. coli
-
Nudler, E., and Gottesman, M.E. (2002) Transcription termination and anti-termination in E. coli. Genes Cells 7: 755-768.
-
(2002)
Genes Cells
, vol.7
, pp. 755-768
-
-
Nudler, E.1
Gottesman, M.E.2
-
57
-
-
0024347587
-
Structure and function of the nun gene and the immunity region of the lambdoid phage HK022
-
Oberto, J., Weisberg, R.A., and Gottesman, M.E. (1989) Structure and function of the nun gene and the immunity region of the lambdoid phage HK022. J Mol Biol 207: 675-693.
-
(1989)
J Mol Biol
, vol.207
, pp. 675-693
-
-
Oberto, J.1
Weisberg, R.A.2
Gottesman, M.E.3
-
58
-
-
0020212903
-
Analysis of nutR: A region of phage lambda required for antitermination of transcription
-
Olson, E.R., Flamm, E.L., and Friedman, D.I. (1982) Analysis of nutR: a region of phage lambda required for antitermination of transcription. Cell 31: 61-70.
-
(1982)
Cell
, vol.31
, pp. 61-70
-
-
Olson, E.R.1
Flamm, E.L.2
Friedman, D.I.3
-
59
-
-
29444442484
-
Switches in bacteriophage lambda development
-
Oppenheim, A.B., Kobiler, O., Stavans, J., Court, D.L., and Adhya, S. (2005) Switches in bacteriophage lambda development. Annu Rev Genet 39: 409-429.
-
(2005)
Annu Rev Genet
, vol.39
, pp. 409-429
-
-
Oppenheim, A.B.1
Kobiler, O.2
Stavans, J.3
Court, D.L.4
Adhya, S.5
-
60
-
-
0025309753
-
Elongation by Escherichia coli RNA polymerase is blocked in vitro by a site-specific DNAbinding protein
-
Pavco, P.A., and Steege, D.A. (1990) Elongation by Escherichia coli RNA polymerase is blocked in vitro by a site-specific DNAbinding protein. J Biol Chem 265: 9960-9969.
-
(1990)
J Biol Chem
, vol.265
, pp. 9960-9969
-
-
Pavco, P.A.1
Steege, D.A.2
-
61
-
-
0037312792
-
Corrected sequence of the bacteriophage P22 genome
-
Pedulla, M.L., Ford, M.E., Karthikeyan, T., Houtz, J.M., Hendrix, R.W., Hatfull, G.F., et al. (2003) Corrected sequence of the bacteriophage P22 genome. J Bacteriol 185: 1475-1477.
-
(2003)
J Bacteriol
, vol.185
, pp. 1475-1477
-
-
Pedulla, M.L.1
Ford, M.E.2
Karthikeyan, T.3
Houtz, J.M.4
Hendrix, R.W.5
Hatfull, G.F.6
-
62
-
-
0028604471
-
Rapid confirmation of single copy lambda prophage integration by PCR
-
Powell, B.S., Rivas, M.P., Court, D.L., Nakamura, Y., and Turnbough, C.L., Jr (1994) Rapid confirmation of single copy lambda prophage integration by PCR. Nucleic Acids Res 22: 5765-5766.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 5765-5766
-
-
Powell, B.S.1
Rivas, M.P.2
Court, D.L.3
Nakamura, Y.4
Turnbough Jr, C.L.5
-
64
-
-
0033545416
-
Four dimers of lambda repressor bound to two suitably spaced pairs of lambda operators form octamers and DNA loops over large distances
-
Revet, B., Von Wilcken-Bergmann, B., Bessert, H., Barker, A., and Müller-Hill, B. (1999) Four dimers of lambda repressor bound to two suitably spaced pairs of lambda operators form octamers and DNA loops over large distances. Curr Biol 9: 151-154.
-
(1999)
Curr Biol
, vol.9
, pp. 151-154
-
-
Revet, B.1
Von Wilcken-Bergmann, B.2
Bessert, H.3
Barker, A.4
Müller-Hill, B.5
-
65
-
-
0037073063
-
Rho-dependent termination and ATPases in transcript termination
-
Richardson, J.P. (2002) Rho-dependent termination and ATPases in transcript termination. Biochim Biophys Acta 1577: 251-260.
-
(2002)
Biochim Biophys Acta
, vol.1577
, pp. 251-260
-
-
Richardson, J.P.1
-
66
-
-
0028801067
-
Action at a distance: DNA-looping and initiation of transcription
-
Rippe, K., Von Hippel, P.H., and Langowski, J. (1995) Action at a distance: DNA-looping and initiation of transcription. Trends Biochem Sci 20: 500-506.
-
(1995)
Trends Biochem Sci
, vol.20
, pp. 500-506
-
-
Rippe, K.1
Von Hippel, P.H.2
Langowski, J.3
-
67
-
-
0023646732
-
The remarkable specificity of a new transcription termination factor suggests that the mechanisms of termination and antitermination are similar
-
Robert, J., Sloan, S.B., Weisberg, R.A., Gottesman, M.E., Robledo, R., and Harbrecht, D. (1987) The remarkable specificity of a new transcription termination factor suggests that the mechanisms of termination and antitermination are similar. Cell 51: 483-492.
-
(1987)
Cell
, vol.51
, pp. 483-492
-
-
Robert, J.1
Sloan, S.B.2
Weisberg, R.A.3
Gottesman, M.E.4
Robledo, R.5
Harbrecht, D.6
-
68
-
-
0027474086
-
RNA and protein elements of E. coli and lambda transcription antitermination complexes
-
Roberts, J.W. (1993) RNA and protein elements of E. coli and lambda transcription antitermination complexes. Cell 72: 653-655.
-
(1993)
Cell
, vol.72
, pp. 653-655
-
-
Roberts, J.W.1
-
69
-
-
0002773599
-
Lysogenic induction
-
Hendrix, R.W, Roberts, J.W, Stahl, F.W, and Weisberg, R.A, eds, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory, pp
-
Roberts, J.W., and Devoret, R. (1983) Lysogenic induction. In Lambda II. Hendrix, R.W., Roberts, J.W., Stahl, F.W., and Weisberg, R.A. (eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory, pp. 123-144.
-
(1983)
Lambda II
, pp. 123-144
-
-
Roberts, J.W.1
Devoret, R.2
-
70
-
-
0020465927
-
Nucleotide sequence of bacteriophage γ DNA
-
Sanger, F., Coulson, A.R., Hong, G.F., Hill, D.F., and Petersen, G.B. (1982) Nucleotide sequence of bacteriophage γ DNA. J Mol Biol 162: 729-773.
-
(1982)
J Mol Biol
, vol.162
, pp. 729-773
-
-
Sanger, F.1
Coulson, A.R.2
Hong, G.F.3
Hill, D.F.4
Petersen, G.B.5
-
71
-
-
0000058799
-
γ repressor recognizes the approximately 2-fold symmetric half- operator sequences asymmetrically
-
Sarai, A., and Takeda, Y. (1989) γ repressor recognizes the approximately 2-fold symmetric half- operator sequences asymmetrically. Proc Natl Acad Sci USA 86: 6513-6517.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 6513-6517
-
-
Sarai, A.1
Takeda, Y.2
-
72
-
-
20444387232
-
A gamut of loops: Meandering DNA
-
Semsey, S., Virnik, K., and Adhya, S. (2005) A gamut of loops: meandering DNA. Trends Biochem Sci 30: 334-341.
-
(2005)
Trends Biochem Sci
, vol.30
, pp. 334-341
-
-
Semsey, S.1
Virnik, K.2
Adhya, S.3
-
73
-
-
0002598437
-
Heteroduplexes of DNA molecules of lambdoid phages: Physical mapping of their base sequence relationships by electron microscopy
-
Hershey, A.D, ed, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory, pp
-
Simon, M.N., Davis, R.W., and Davidson, N. (1971) Heteroduplexes of DNA molecules of lambdoid phages: physical mapping of their base sequence relationships by electron microscopy. In The Bacteriophage Lambda. Hershey, A.D. (ed.). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory, pp. 313-328.
-
(1971)
The Bacteriophage Lambda
, pp. 313-328
-
-
Simon, M.N.1
Davis, R.W.2
Davidson, N.3
-
74
-
-
0027505052
-
Use of a gene encoding a suppressor tRNA as a reporter of transcription: Analyzing the action of the Nun protein of bacteriophage HK022
-
Sloan, S.B., and Weisberg, R.A. (1993) Use of a gene encoding a suppressor tRNA as a reporter of transcription: analyzing the action of the Nun protein of bacteriophage HK022. Proc Natl Acad Sci USA 90: 9842-9846.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 9842-9846
-
-
Sloan, S.B.1
Weisberg, R.A.2
-
75
-
-
0023620676
-
Bacteriophage lambda N gene leader RNA. RNA processing and translational initiation signals
-
Steege, D.A., Cone, K.C., Queen, C., and Rosenberg, M. (1987) Bacteriophage lambda N gene leader RNA. RNA processing and translational initiation signals. J Biol Chem 262: 17651-17658.
-
(1987)
J Biol Chem
, vol.262
, pp. 17651-17658
-
-
Steege, D.A.1
Cone, K.C.2
Queen, C.3
Rosenberg, M.4
-
76
-
-
0005830941
-
Analysis of the sequence-specific interactions between Cro repressor and operator DNA by systematic base substitution experiments
-
Takeda, Y., Sarai, A., and Rivera, V.M. (1989) Analysis of the sequence-specific interactions between Cro repressor and operator DNA by systematic base substitution experiments. Proc Natl Acad Sci USA 86: 439-443.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 439-443
-
-
Takeda, Y.1
Sarai, A.2
Rivera, V.M.3
-
77
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
78
-
-
0029317738
-
Retrons: Retroelements of no known function
-
Travisano, M., and Inouye, M. (1993) Retrons: retroelements of no known function. Trends Microbiol 3: 209-211.
-
(1993)
Trends Microbiol
, vol.3
, pp. 209-211
-
-
Travisano, M.1
Inouye, M.2
-
79
-
-
0017189626
-
New lambdoid phages of Escherichia coli. II. Comparison of several genetic characteristics with lambda phages
-
Tsygankov, I.D., Karapetian, A.T., and Krylov, V.N. (1976) New lambdoid phages of Escherichia coli. II. Comparison of several genetic characteristics with lambda phages. Genetika 12: 112-117.
-
(1976)
Genetika
, vol.12
, pp. 112-117
-
-
Tsygankov, I.D.1
Karapetian, A.T.2
Krylov, V.N.3
-
80
-
-
0036682612
-
The global regulator RNase III modulates translation repression by the transcription elongation factor N
-
Wilson, H.R., Yu, D., Peters, H.K.I., Zhou, J.G., and Court, D.L. (2002) The global regulator RNase III modulates translation repression by the transcription elongation factor N. EMBO J 21: 4154-4161.
-
(2002)
EMBO J
, vol.21
, pp. 4154-4161
-
-
Wilson, H.R.1
Yu, D.2
Peters, H.K.I.3
Zhou, J.G.4
Court, D.L.5
-
81
-
-
0023112499
-
Cross-specificities between cII-like proteins and pRE-like promoters of lambdoid bacteriophages
-
Wulff, D.L., and Mahoney, M.E. (1987) Cross-specificities between cII-like proteins and pRE-like promoters of lambdoid bacteriophages. Genetics 115: 597-604.
-
(1987)
Genetics
, vol.115
, pp. 597-604
-
-
Wulff, D.L.1
Mahoney, M.E.2
-
82
-
-
0034705144
-
An efficient recombination system for chromosome engineering in Escherichia coli
-
Yu, D.G., Ellis, H.M., Lee, E.C., Jenkins, N.A., Copeland, N.G., and Court, D.L. (2000) An efficient recombination system for chromosome engineering in Escherichia coli. Proc Natl Acad Sci USA 97: 5978-5983.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 5978-5983
-
-
Yu, D.G.1
Ellis, H.M.2
Lee, E.C.3
Jenkins, N.A.4
Copeland, N.G.5
Court, D.L.6
|