Erratum (DOI:10.1016/j.exphem.2007.01.012);Multivariate analysis of low-dose radiation-associated changes in cytokine gene expression profiles using microarray technology

Experimental Hematology

Volumn 35, Issue 4 SUPPL., 2007, Pages 47-54

  Albanese, Joseph ^a   Martens, Kelly ^a,b   Karkanitsa, Leonid V ^c   Dainiak, Nicholas ^a,b,c  

^a YALE NEW HAVEN HEALTH SYSTEM   (United States)

^b YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c BRIDGEPORT HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CD40 LIGAND; COMPLEMENTARY DNA; CYTOKINE; DEOXYADENOSINE TRIPHOSPHATE; EB13 PROTEIN; MESSENGER RNA; PROTEIN DERIVATIVE; PROTEIN KINASE LKB1; PROTEIN SERINE THREONINE KINASE; PROTEIN SERINE THREONINE KINASE 19; TRANSFORMING GROWTH FACTOR; TRANSFORMING GROWTH FACTOR 11; TRANSFORMING GROWTH FACTOR 19; UNCLASSIFIED DRUG;

ARTICLE; BIOINFORMATICS; CHERNOBYL ACCIDENT; CLUSTER ANALYSIS; COMMUNITY; CONTROLLED STUDY; DATA ANALYSIS; DATA BASE; DNA MICROARRAY; FEMALE; GENE EXPRESSION; GENE TARGETING; HIERARCHICAL CLUSTERING ANALYSIS; HUMAN; HUMAN CELL; HYBRIDIZATION; IONIZING RADIATION; ISOTOPE LABELING; LOW ENERGY RADIATION; MALE; METHODOLOGY; MONONUCLEAR CELL; MULTIVARIATE ANALYSIS; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; PROJECTION PURSUIT; RADIATION DOSE; RADIATION EXPOSURE; RADIOBIOLOGY; RNA ISOLATION; RNA TRANSCRIPTION; STATISTICAL ANALYSIS; STATISTICS;

EID: 33947261668     PISSN: 0301472X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.exphem.2008.03.017     Document Type: Erratum

References (37)

1. Amundson S.A., Bittner M., Chen Y., Trent J., Meltzer P., and Fornace Jr. A.J. Fluorescent cDNA microarray hybridization reveals complexity and heterogeneity of cellular genotoxic stress responses. Oncogene 18 (1999) 3666-3672
2. Akerman G.S., Rosenzweig B.A., Domon O.E., et al. Alterations in gene expression profiles and the DNA-damage response in ionizing radiation-exposed TK6 cells. Environ Mol Mutagen 45 (2005) 188-205
3. Amundson S.A., Do K.T., Shahab S., et al. Identification of potential mRNA biomarkers in peripheral blood lymphocytes for human exposure to ionizing radiation. Radiat Res 154 (2000) 342-346
4. Hosoi Y., Miyachi H., Matsumoto Y., et al. Induction of interleukin-1β and interleukin-6 mRNA by low doses of ionizing radiation in macrophages. Int J Radiat Biol 77 (2001) 763-772
5. Jen K.Y., and Cheung V.G. Transcriptional response of lymphoblastoid cells to ionizing radiation. Genome Res 13 (2003) 2092-2100
6. Rieger K.E., and Chu G. Portrait of transcriptional responses to ultraviolet and ionizing radiation in human cells. Nucleic Acids Res 32 (2004) 4786-4803
7. Mori M., Benotmane M.A., Tirone I., Hooghe-Peters E.L., and Desaintes C. Transcriptional response to ionizing radiation in lymphocyte subsets. Cell Mol Life Sci 62 (2005) 1489-1501
8. Snyder A.R., and Morgan W.F. Gene expression profiling after irradiation: clues to understanding acute and persistent responses?. Cancer Metastasis Rev 23 (2004) 259-268
9. Wall B.F., Kendall G.M., Edwards A.A., Bouffler S., Muirhead C.R., and Meara J.R. What are the risks from medical X-rays and other low dose radiation?. Br J Radiol 79 (2006) 285-294
10. Brooks A.L. Developing a scientific basis for radiation risk estimates: goal of the DOE Low Dose Research Program. Health Phys 85 (2003) 85-93
11. Schreyer S.K., Karkanitsa L.V., Albanese J., Ostapenko V.A., Shevchuk V.Y., and Dainiak N. Analysis of radiation-associated changes in gene expression using microarray technology. Chronic Irradiation: Tolerance and Failure in Complex Biological Systems, Supplement 26 (2002), British Institute of Radiology, London, UK 129-139
12. Dainiak N., Schreyer S.K., and Albanese J. The search for mRNA biomarkers: global quantification of transcriptional and translational responses to ionising radiation. BJR Suppl 27 (2005) 114-122
13. Hubert M., Rousseeuw P.J., and Verboven S. A fast robust method for principal components with applications to chemometrics. Chemometrics Intell Lab Syst 60 (2002) 101-111
14. Albanese J., and Dainiak N. Ionizing radiation alters Fas antigen ligand at the cell surface and on exfoliated plasma membrane-derived vesicles: implications for apoptosis and intercellular signaling. Radiat Res 153 (2000) 49-61
15. Sambrook J., Fritch E.F., and Maniatis T. Molecular cloning: a laboratory manual. 2nd ed. (1989), Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y
16. Karkanitsa L., Mitskevitch P., Uss A., Ostapenko V., and Daniak N. Elevated levels of cytokine expression in leukemic, hematopoietic cells of Belarusians exposed to ionizing radiation following the Chernobyl catastrophe. Blood 96 (2000) 295a
17. Xing E.P., and Karp R.M. CLIFF: clustering of high-dimensional microarray data via iterative feature filtering using normalized cuts. Bioinformatics 17 Suppl 1 (2001) S306-S315
18. Hibbs M.A., Dirksen N.C., Li K., and Troyanskaya O.G. Visualization methods for statistical analysis of microarray clusters. BMC Bioinformatics 6 (2005) 115
19. Orr M.S., and Scherf U. Large-scale gene expression analysis in molecular target discovery. Leukemia 16 (2002) 473-477
20. Roessner U., Willmitzer L., and Fernie A.R. High-resolution metabolic phenotyping of genetically and environmentally diverse potato tuber systems: Identification of phenocopies. Plant Physiol 127 (2001) 749-764
21. van der Werf M.J., Pieterse B., van Luijk N., et al. Multivariate analysis of microarray data by principal component discriminant analysis: prioritizing relevant transcripts linked to the degradation of different carbohydrates in Pseudomonas putida S12. Microbiology 152 (2006) 257-272
22. Peterson L.E. Partitioning large-sample microarray-based gene expression profiles using principal components analysis. Comput Methods Programs Biomed 70 (2003) 107-119
23. Sheehan M., and Broxmeyer H.J.E. The humoral regulation of hematopoiesis. In: Hoffman R., Benz E., Shattil S., Furie B., Cohen H., Silberstein L., and McGlave P. (Eds). Hematology: Basic Principles and Practice. 4th ed. (2005), Elsevier Churchill Livingstone, Orlando, FL 233-265
24. Broxmeyer H.E., Williams D.E., Lu L., et al. The suppressive influences of human tumor necrosis factor on bone marrow hematopoietic progenitor cells from normal donors and patients with leukemia: Suppression of tumor necrosis factor and interferon-gamma. J Immunol 136 (1986) 4487-4498
25. Albanese J., and Dainiak N. Regulation of TNFRSF6 (Fas) expression in ataxia telangiectasia cells by ionizing radiation. Radiat Res 154 (2000) 616-624
26. Sheikh M.S., Burns T.F., Huang Y., et al. P53-dependent and -independent regulation of the death receptor KILLER/DR5 gave expression in response to genotoxic stress and tumor necrosis factor alpha. Cancer Res 58 (1998) 1593-1598
27. Belka C., Marini P., Budach W., et al. Radiation-induced apopotisis in human lymphocytes and lymphoma cells critically relies on the up-regulation of CD95/Fas/APO-1 ligand. Radiat Res 149 (1998) 588-595
28. Kaina B. DNA damage-triggered apoptosis: critical role of DNA repair, double strand breaks, cell proliferation and signaling. Biochem Pharmacol 66 (2003) 1547-1554
29. Kimura S., Ishidou E., Kurita S., et al. DNA microarray analyses reveal a post-irradiation differential time-dependent gene expression profile in yeast cells exposed to X-rays and gamma-rays. Biochem Biophys Res Commun (2006) (Epub ahead of print)
30. Amundson S.A., Bittner M., and Fornace Jr. A.J. Functional genomics as a window on radiation stress signaling. Oncogene 22 (2003) 5828-5833
31. Elfilali A., Lair S., Verbeke C., La Rosa P., Radvanyi F., and Barillot E. ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis. Nucleic Acids Res 34 (2006) D613-D616
32. Stoeckert Jr. C.J., Causton H.C., and Ball C.A. Microarray databases: standards and ontologies. Nat Genet 32 Suppl (2002) 469-473
33. Penkett C.J., and Bähler J. Getting the most from public microarray data. Eur Pharma Rev 1 (2003) 8-17
34. Brazma A., Hingamp P., Quackenbush J., et al. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 29 (2001) 365-371
35. Amundson S.A., Grace M.B., McLeland C.B., et al. Human in vivo radiation-induced biomarkers: gene expression changes in radiotherapy patients. Cancer Res 64 (2004) 6368-6371
36. Ding L.H., Shingyoji M., Chen F., et al. Gene expression profiles of normal human fibroblasts after exposure to ionizing radiation: a comparative study of low and high doses. Radiat Res 164 (2005) 17-26
37. Sugihara T., Magae J., Wadhwa R., et al. Dose and dose-rate effects of low-dose ionizing radiation on activation of Trp53 in immortalized murine cells. Radiat Res 162 (2004) 296-307