Isolation and characterization of the rat SND p102 gene promoter: Putative role for nuclear factor-Y in regulation of transcription

Annals of the New York Academy of Sciences

Volumn 1091, Issue , 2006, Pages 282-295

  Rodríguez, Lorena ^a   Bartolomé, Nerea ^a   Ochoa, Begoña ^a   Martínez, María José ^a  

^a UNIVERSITY OF THE BASQUE COUNTRY UPV EHU   (Spain)

Author keywords

Gene promoter; Nuclear factor Y; SND p102; Transcription

Indexed keywords

CHOLESTEROL ESTERASE; NUCLEAR FACTOR Y; RNA LIGASE; STAPHYLOCOCCAL NUCLEASE DOMAIN CONTAINING PROTEIN OF 102; TRANSCRIPTION FACTOR SP1; UNCLASSIFIED DRUG; CCAAT BINDING FACTOR; NUCLEAR PROTEIN; SND1 PROTEIN, RAT; TRANSCRIPTION FACTOR;

ANIMAL CELL; BINDING SITE; BIOINFORMATICS; CONFERENCE PAPER; CONTROLLED STUDY; DATA BASE; ENDOPLASMIC RETICULUM; GC RICH SEQUENCE; GEL MOBILITY SHIFT ASSAY; GENE AMPLIFICATION; GENE CONTROL; GENE ISOLATION; GENE SEQUENCE; HUMAN; HUMAN CELL; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PROMOTER REGION; PROTEIN ANALYSIS; PROTEIN MOTIF; RAT; START CODON; TATA BOX; TRANSCRIPTION INITIATION SITE; TRANSCRIPTION REGULATION; TRANSLATION INITIATION; ANIMAL; ARTICLE; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHYSIOLOGY; TUMOR CELL LINE;

RATTUS;

ANIMALS; BASE SEQUENCE; CCAAT-BINDING FACTOR; CELL LINE, TUMOR; GENE EXPRESSION REGULATION; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PROMOTER REGIONS (GENETICS); RATS; TATA BOX; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 33947228756     PISSN: 00778923     EISSN: 17496632     Source Type: Book Series    
DOI: 10.1196/annals.1378.074     Document Type: Conference Paper

References (24)

1. CRISTÓBAL, S., B. OCHOA & O. FRESNEDO. 1999. Purification and characterization of a cholesteryl ester hydrolase from rat liver microsomes. J. Lipid Res. 40: 715-725.
2. PALACIOS, L., B. OCHOA, M.J. GÓMEZ- LECHÓN, et al. 2006. Overexpression of SND p102, a rat homologue of p100 coactivator, promotes the secretion of lipoprotein phospholipids in primary hepatocytes. Biochim. Biophys. Acta 1761: 698-708.
3. FRESNEDO, O., M. LÓPEZ DE HEREDIA, M.J. MARTÍNEZ, et al. 2001. Inmunolocalization of a novel cholesteryl ester hydrolase in the endoplasmic reticulum of murine and human hepatocyte. Hepatology 3: 662-667.
4. KEENAN, T.W., S. WINTER, H.R. RACKWITZ & H.W. HEID. 2000. Nuclear coactivator protein p100 is present in endoplasmic reticulum and lipid droplets of milk secreting cells. Biochim. Biophys. Acta 1523: 84-90.
5. CAUDY, A.A., R.F. KETTING, S.M. HAMMOND, et al. 2003. A micrococcal nuclease homologue in RNAi effector complexes. Nature 425: 411-414.
6. BROADHURST, M.K., R.S.F. LEE, S. HAWKINS & T.T. WHEELER. 2005. The p100 EBNA-2 coactivator: a highly conserved protein found in a range of exocrine and endocrine cells and tissues in cattle. Biochim. Biophys. Acta 1681: 126-133.
7. MANTOVANI, R. 1998. A survey of 178 NF-Y binding CCAAT boxes. Nucleic Acids Res. 26: 1135-1143.
8. ROZEN, S. & H.J. SKALETSKY. 2000. Primer3 on the WWW for general users and for biologist programmers. In Bioinformatics Methods and Protocols: Methods in Molecular Biology. S. Krawetz & S. Misener, Eds.: 365-386. Humana Press, Totowa, NJ.
9. SCHUG, J. & G.C. OVERTON. 1997. TESS: Transcription Element Search Software on the WWW. Technical Report CBIL-TR-1997-1001-v0.0. School of Medicine. University of Pennsylvania.
10. CARTHARIUS, K., K. FRECH, K. GROTE, et al. 2005. MatInspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics 21: 2933-2942.
11. SANDELIN, A., W. ALKEMA, P. ENGSTRÖM, et al. 2004. JASPAR: an open access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res. 32: D91-D94 [Database issue].
12. LENHARD, B. & W. WASSERMAN. 2002. TFBS: computational framework for transcription factor binding site analysis. Bioinformatics 18: 1135-1136.
13. ISUSI, E., P. ASPICHUETA, M. LIZA, et al. 2000. Short- and long-term effects of atorvastatin, lovastatin and simvastatin on the cellular metabolism of cholesteryl esters and VLDL secretion in hepatocytes. Atherosclerosis 153: 283-294.
14. BRADFORD, M.M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72: 248-254.
15. BOUWMAN, P. & S. PHILIPSEN. 2002. Regulation of the activity of Sp1-related transcription factors. Mol. Cell. Endocrinol. 195: 27-38.
16. CORRE, S. & M.D. GALIBERT. 2005. Upstream stimulating factors: highly versatile stress-responsive transcription factors. Pigment Cell Res. 18: 337-348.
17. ROESLER, W.J. 2001. The role of C/EBP in nutrient and hormonal regulation of gene expression. Annu. Rev. Nutr. 21: 141-165.
18. BROMBERG, J. & J.E. DARNELL JR. 2000. The role of STATs in transcriptional control and their impact on cellular function. Oncogene 19: 2468-2473.
19. SCHREM, H., J. KLEMPNAUER & J. BORLAK. 2002. Liver-enriched transcription factors in liver function and development. Part I: the hepatocyte nuclear factor network and liver-specific gene expression. Pharmacol. Rev. 54: 129-158.
20. RODER, K., S.S. WOLF, K.J. LARKIN & M. SCHWEIZER. 1999. Interaction between the two ubiquitously expressed transcription factors NF-Y and Sp1. Genes 234: 61-69.
21. SUNYAKUMTHORN, P., T. BOONSAEN, V. BOONSAENG, et al. 2005. Involvement of specific proteins (Sp1/Sp3) and nuclear factor Y in the basal transcription of the distal promoter of the rat pyruvate carboxylase gene in beta-cells. Biochem. Biophys. Res. Commun. 329: 188-196.
22. TAPIAS, A., P. MONASTERIO, C.J. CIUDAD & V. NOE. 2005. Characterization of the 5′-flanking region of the human transcription factor Sp3 gene. Biochim. Biophys. Acta 1730: 126-136.
23. XIONG, S., S.S. CHIRALA & S.J. WAKIL. 2000. Sterol regulation of human fatty acid synthase promoter I requires nuclear factor-Y and Sp1 binding sites. Proc. Natl. Acad. Sci. USA 97: 3948-3953.
24. MANTOVANI, R. 1999. The molecular biology of the CCAAT-binding factor NF-Y. Gene 239: 15-27.