Work fluctuation theorems and single-molecule biophysics

Progress of Theoretical Physics Supplement

Volumn , Issue 165, 2006, Pages 1-17

  Jarzynski, Christopher ^a  

^a LOS ALAMOS NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 33947221458     PISSN: 03759687     EISSN: 13474081     Source Type: Journal    
DOI: 10.1143/PTPS.165.1     Document Type: Article

References (64)

1. C. Bustamante, Y. R. Chemla, N. R. Forde and D. Izhaky, Annu. Rev. Biochem. 73 (2004), 705.
2. R. C. Tolman, The Principles of Statistical Mechanics (Oxford, 1938).
3. L. Onsager, Phys. Rev. 37 (1931), 405;
4. ibid. 38 (1931), 2265.
5. L. Onsager and S. Machlup, Phys. Rev. 91 (1953), 1505.
6. R. Kubo, Rep. Prog. Phys. 29 (1968), 255.
7. C. Bustamante, J. Liphardt and F. Ritort, Phys. Today 58 (2005), 43.
8. D. J. Evans, E. G. D. Cohen and G. P. Morriss, Phys. Rev. Lett. 71 (1993), 2401.
9. D. J. Evans and D. J. Searles, Phys. Rev. E 50 (1994), 1645.
10. G. Gallavotti and E. G. D. Cohen, J. Stat. Phys. 80 (1995), 931.
11. J. Kurchan, J. of Phys. A 31 (1998), 3719.
12. J. L. Lebowitz and H. Spohn, J. Stat. Phys. 95 (1999), 333.
13. C. Maes, J. Stat. Phys. 95 (1999), 367.
14. D. J. Evans and D. Searles, Adv. Phys. 51 (2002), 1529.
15. G. M. Wang et al., Phys. Rev. Lett. 89 (2002), 050601.
16. D. M. Carberry et al., Phys. Rev. Lett. 92 (2004), 140601.
17. R. van Zon, S. Ciliberto and E. G. D. Cohen, Phys. Rev. Lett. 92 (2004), 130601.
18. C. Jarzynski, Phys. Rev. Lett. 78 (1997), 2690.
19. C. Jarzynski, Phys. Rev. E 56 (1997), 5018.
20. G. E. Crooks, J. Stat. Phys. 90 (1998), 1481.
21. G. E. Crooks, Phys. Rev. E 60 (1999), 2721.
22. G. E. Crooks, Phys. Rev. E 61 (2000), 2361.
23. A. Yukawa, J. Phys. Soc. Jpn. 69 (2000), 2367.
24. G. Hummer and A. Szabo, Proc. Natl. Acad. Sci. USA 98 (2001), 3658.
25. C. Jarzynski, in Dynamics of Dissipation, ed. P. Garbaczewski and R. Olkiewicz (Springer, Berlin, 2002).
26. J. Liphardt et al., Science 296 (2002), 1832.
27. D. J. Evans, Mol. Phys. 101 (2003), 1551.
28. S. Mukamel, Phys. Rev. Lett. 90 (2003), 170604.
29. F. Ritort, Séminaire Poincaré 2 (2003), 193.
30. S. X. Sun, J. Chem. Phys. 118 (2003), 5769.
31. E. G. D. Cohen and D. Mauzerall, J. Stat. Mech.: Theor. Exp. P07006 (2004).
32. C. Jarzynski, J. Stat. Mech.: Theor. Exp. P09005 (2004).
33. S. Park and K. Schulten, J. Chem. Phys. 120 (2004), 5946.
34. F. Deuarche, S. Ciliberto, A. Petrosyan and I. Rabbiosi, Europhys. Lett. 70 (2005), 593.
35. F. Douarche, S. Ciliberto and A. Petrosyan, J. Stat. Mech.:Theor. Exp. P09005 (2004).
36. D. Collin et al., "Experimental test of the Crooks Fluctuation Theorem", Nature (accepted for publication).
37. T. Monnai, Phys. Rev. E 72 (2005), 027102.
38. For cyclic thermodynamic processes, in which the work parameter returns to its initial value (A = B, i.e. ΔG = 0), Eq. (2-3) reduces to a result derived earlier by G. N. Bochkov and Yu. E. Kuzovlev, Zh. Eksp. Teor. Fiz. 72 (1977), 238
39. [Sov. Phys.-JETP 45 (1977), 125];
40. Physica A 106 (1981), 443;
41. ibid. 106 (1981), 480.
42. C. B. P. Finn, Thermal Physics, 2nd Ed. (Chapman and Hall, London, 1993).
43. J. M. Schurr and B. S. Fujimoto, J. Phys. Chem. B 107 (2003), 14007.
44. O. Narayan and A. Dhar, J. of Phys. A 37 (2004), 63.
45. A. Dhar, Phys. Rev. E 71 (2005), 036126.
46. K. Sekimoto, Prog. Theor. Phys. Suppl. No. 130 (1998), 17.
47. R. H. Wood, W. C. F. Mühlbauer and P. T. Thompson, J. Phys. Chem. 95 (1991), 6670.
48. W. P. Reinhardt and J. E. Hunter III, J. Chem. Phys. 97 (1992), 1599.
49. J. E. Hunter III, W. P. Reinhardt and T. F. Davis, J. Chem. Phys. 99 (1993), 6856.
50. M. A. Miller and W. P. Reinhardt, J. Chem. Phys. 113 (2000), 7035.
51. J. W. Gibbs, Elementary Principles in Statistical Mechanics (Scribner's, New York, 1902), p. 42.
52. E. Schrödinger, Statistical Thermodynamics (Cambridge, 1962). See the paragraphs found between Eqs. (2.13) and (2.14).
53. G. E. Uhlenbeck and G. W. Ford, Lectures in Statistical Mechanics (American Mathematical Society, Providence, 1963), Chapter I, §7.
54. J. G. Kirkwood, J. Chem. Phys. 3 (1935), 300.
55. D. Chandler and L.R. Pratt, J. Chem. Phys. 65 (1976), 2925.
56. L. R. Pratt and D. Chandler, J. Chem. Phys. 66 (1977), 147.
57. B. Roux, "Implicit solvent models", in Computational Biochemistry and Biophysics, ed. O. Becker, A. D. MacKerell, B. Roux and M. Watanabe (Marcel Dekker, New York, 2001).
58. R. B. Simpson and W. Kauzmann, J. Am. Chem. Soc. 75 (1953), 5139.
59. T. L. Hill, Statistical Mechanics: Principles and Selected Applications (McGraw-Hill, New York, 1956).
60. T. L. Hill, An Introduction to Statistical Thermodynamics (Addison-Wesley, Reading, MA, 1960).
61. P. Attard, J. Chem. Phys. 103 (1995), 9884.
62. G. J. M. Koper and H. Reiss, J. Phys. Chem. 100 (1996), 422.
63. D. S. Corti and G. Soto-Campos, J. Chem. Phys. 108 (1998), 7959.
64. K.-K. Han and H. S. Son, J. Chem. Phys. 115 (2001), 7793.