Phylogenetic analysis of Antrodia species and Antrodia camphorata inferred from internal transcribed spacer region

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 91, Issue 3, 2007, Pages 267-276

  Chiu, Hua Hsien ^a  

^a FOOYIN UNIVERSITY   (Taiwan)

Author keywords

Antrodia fungi; ITS; Polymorphisms; Ribosomal RNA gene

Indexed keywords

FUNGAL DNA; FUNGAL RNA; INTERNAL TRANSCRIBED SPACER; RIBOSOME RNA;

ALLELE; AMPLICON; ANTRODIA; ANTRODIA ALBIDA; ANTRODIA CAMPHORATA; ANTRODIA CARBINCA; ANTRODIA HETEROMORPHA; ANTRODIA MALICOLA; ANTRODIA SALMONEA; ANTRODIA SERIALIS; ANTRODIA SINUOSA; ANTRODIA XANTHA; APHYLLOPHORALES; ARTICLE; BASIDIOMYCETES; CONTROLLED STUDY; DNA SEQUENCE; FUNGAL GENETICS; FUNGAL STRAIN; FUNGUS IDENTIFICATION; GENETIC POLYMORPHISM; MOLECULAR PHYLOGENY; MOLECULAR SIZE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE DATABASE; SPECIES DIFFERENTIATION; STRAIN DIFFERENCE;

DNA, FUNGAL; DNA, RIBOSOMAL SPACER; MYCOLOGICAL TYPING TECHNIQUES; PHYLOGENY; POLYMORPHISM, GENETIC; POLYPORALES; SPECIES SPECIFICITY;

ANTRODIA; ANTRODIA ALBIDA; ANTRODIA HETEROMORPHA; ANTRODIA MALICOLA; ANTRODIA SALMONEA; ANTRODIA SERIALIS; ANTRODIA SINUOSA; ANTRODIA XANTHA; APHYLLOPHORALES; FUNGI; TAIWANOFUNGUS CAMPHORATUS;

EID: 33947196850     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-006-9116-4     Document Type: Article

References (28)

1. Beltrame-Botelho IT, Gaspar-Silva D, Steindel M, Davila AM, Grisard EC (2005) Internal transcribed spacers (ITS) of Trypanosoma rangeli ribosomal DNA (rDNA): A useful marker for inter-specific differentiation. Infect Genet Evol 5:17-28
2. Chang TT, Chou WN (1995) Antrodia cinnamomea sp. nov. on Cinnamomum kanehirai in Taiwan. Mycol Res 99:756-758
3. Chang TT, Chou WN (2004) Antrodia cinnamomea reconsidered and A. salmonea sp. nov. on Cunninghamia konishii in Taiwan. Bot Bull Acad Sin 45:347-352
4. Cheng JJ, Yang CJ, Cheng CH, Wang YT, Huang NK, Lu MK (2005) Characterization and functional study of Antrodia camphorata lipopolysaccharide. J Agric Food Chem 53:469-474
5. Cherng IH, Wu DP, Chiang HC (1996) Triterpenoids from Antrodia cinnamomea. Phytochemistry 41:263-267
6. Dai YC, Niemela T (2002) Changbai wood-rotting fungi 13. Antrodia sensu lato. Ann Bot Fennici 39:257-265
7. Hall TA (1999) BioEdit: A use-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
8. Healy M, Reece K, Walton D, Huong J, Shah K, Kontoyiannis DP (2004) Identification to the species level and differentiation between strains of Aspergillus clinical isolates by automated repetitive-sequence-based PCR. J Clin Microbiol 42:4016-4024
9. Henry T, Iwen PC, Hinrichs SH (2000) Identification of Aspergillus species using internal transcribed spacer regions 1 and 2. J Clin Microbiol 38:1510-1515
10. Hermosa MR, Grondona I, Iturriaga EA, Diaz-Minguez JM, Castro C, Monte E, Garcia-Acha I (2000) Molecular characterization and identification of biocontrol isolates of Trichoderma spp. Appl Environ Microbiol 66:1890-1898
11. Hseu YC, Chang WC, Hseu YT, Lee CY, Yech YJ, Chen PC, Chen JY, Yang HL (2002) Protection of oxidative damage by aqueous extract from Antrodia camphorata mycelia in normal human erythrocytes. Life Sci 71:469-482
12. Huang NK, Cheng JJ, Lai WL, Lu MK (2005) Antrodia camphorata prevents rat pheochromocytoma cells from serum deprivation-induced apoptosis. FEMS Microbiol Lett 244:213-219
13. Kim SY, Park SY, Ko KS, Jung HS (2003) Phylogenetic analysis of Antrodia and related taxa based on partial mitochondrial SSU rDNA sequences. Antonie Van Leeuwenhoek 83:81-88
14. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through the comparative studies of sequence evolution. J Mol Evol 16:111-120
15. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
16. Lee CH, Helweg-Larsen J, Tang X, Jin S, Li B, Bartlett MS, Lu JJ, Lundgren B, Lundgren JD, Olsson M, Lucas SB, Roux P, Cargnel A, Atzori C, Matos O, Smith JW (1998) Update on Pneumocystis carinii f. sp. hominis typing based on nucleotide sequence variations in internal transcribed spacer regions of rRNA genes. J Clin Microbiol 36:734-741
17. Lee IH, Huang RL, Chen CT, Chen HC, Hsu WC, Lu MK (2002) Antrodia camphorata polysaccharides exhibit anti-hepatitis B virus effects. FEMS Microbiol Lett 209:63-67
18. Ryvarden L (1991) Genera of polypores: Nomenclature and taxonomy. Synopsis Fungorum 5:1-363
19. Shen YC, Chou CJ, Wang YH, Chen CF, Chou YC, Lu MK (2004) Anti-inflammatory activity of the extracts from mycelia of Antrodia camphorata cultured with water-soluble fractions from five different Cinnamomum species. FEMS Microbiol Lett 231:137-143
20. Song TY, Yen GC (2002) Antioxidant properties of Antrodia camphorata in submerged culture. J Agric Food Chem 50:3322-3327
21. Song TY, Yen GC (2003) Protective effects of fermented filtrate from Antrodia camphorata in submerged culture against CCl4-induced hepatic toxicity in rats. J Agric Food Chem 51:1571-1577
22. Song TY, Hsu SL, Yen GC (2005) Induction of apoptosis in human hepatoma cells by mycelia of Antrodia camphorata in submerged culture. J Ethnopharmacol 100:158-167
23. Tanabe H, Kawasaki M, Mochizuki T, Ishizaki H (2004) Species identification and strain typing of Fonsecaea pedrosoi using ribosomal RNA gene internal transcribed spacer regions. Nippon Ishinkin Gakkai Zasshi 45:105-112
24. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
25. Wang GJ, Tseng HW, Chou CJ, Tsai TH, Chen CT, Lu MK (2003) The vasorelaxation of Antrodia camphorata mycelia: Involvement of endothelial Ca(2+)-NO-cGMP pathway. Life Sci 73:2769-2783
26. White TJ, Bruns T, Lee S, Taylor J (1990) Amplication and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Academic Press, San Diego
27. Wu SH, Ryvarden L, Chang TT (1997) Antrodia camphorata ("niu-chang-chih"), new combination of a medicinal fungus in Taiwan. Bot Bull Acad Sin 38:273-275
28. Wu SH, Yu ZH, Dai YC, Chen CT, Su CH, Chen LC, Hsu WC, Hwang GY (2004) Taiwanofungus, a polypore new genus. Fung Sci 19:109-116