메뉴 건너뛰기




Volumn 20, Issue 1, 2005, Pages 41-52

Methanogenesis as an Important Terminal Electron Accepting Process in Estuarine Sediment at the Mouth of Orikasa River

Author keywords

estuarine sediment; metal reduction; methane production; methanogens; sulfate reduction

Indexed keywords


EID: 33947170491     PISSN: 13426311     EISSN: 13474405     Source Type: Journal    
DOI: 10.1264/jsme2.20.41     Document Type: Article
Times cited : (23)

References (45)
  • 1
    • 0018391114 scopus 로고
    • Seasonal temperature as a factor influencing bacterial sulphate reduction in a saltmarsh sediment
    • Abdollahi, H. and D.B. Nedwell. 1979. Seasonal temperature as a factor influencing bacterial sulphate reduction in a saltmarsh sediment. Microb. Ecol. 5: 73–79.
    • (1979) Microb. Ecol. , vol.5 , pp. 73-79
    • Abdollahi, H.1    Nedwell, D.B.2
  • 2
    • 51649159640 scopus 로고
    • Application of formaldoxime colorimetric method for the determination of manganese in the pore water of anoxic estuarine sediments
    • Armstrong, P.B., W.B. Lyons and H.E. Gaudette. 1979. Application of formaldoxime colorimetric method for the determination of manganese in the pore water of anoxic estuarine sediments. Estuaries 2: 198–201.
    • (1979) Estuaries , vol.2 , pp. 198-201
    • Armstrong, P.B.1    Lyons, W.B.2    Gaudette, H.E.3
  • 3
    • 0032493119 scopus 로고    scopus 로고
    • Temperature dependence of microbial degradation of organic matter in marine sediments: polysaccharide hydrolysis, oxygen consumption, and sulfate reduction
    • Arnosti, C., B.B. Jørgensen, B. Sagemann and B. Thamdrup. 1998. Temperature dependence of microbial degradation of organic matter in marine sediments: polysaccharide hydrolysis, oxygen consumption, and sulfate reduction. Mar. Ecol. Prog. Ser. 165: 59–70.
    • (1998) Mar. Ecol. Prog. Ser. , vol.165 , pp. 59-70
    • Arnosti, C.1    Jørgensen, B.B.2    Sagemann, B.3    Thamdrup, B.4
  • 4
    • 0029832927 scopus 로고    scopus 로고
    • Perspectives on archaeal diversity, thermophily and monophily from environmental rRNA sequences
    • Barns, S.M., C.F. Delwiche, J.D. Palmer and N.R. Pace. 1996. Perspectives on archaeal diversity, thermophily and monophily from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 93: 9188–9193.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 9188-9193
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 7
    • 0038369933 scopus 로고    scopus 로고
    • Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment
    • Bowman, J.P. and R.D. McCuaig. 2003. Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Appl. Environ. Microbiol. 69: 2463–2483.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2463-2483
    • Bowman, J.P.1    McCuaig, R.D.2
  • 9
    • 0027789790 scopus 로고
    • The anaerobic degradation of organic matter in Danish coastal sediments: Fe reduction, Mn reduction and sulfate reduction
    • Canfield, D.E., B. Thamdrup and J.W. Hansen. 1993. The anaerobic degradation of organic matter in Danish coastal sediments: Fe reduction, Mn reduction and sulfate reduction. Geochim. Cosmo-chim. Acta 57: 2563–2570.
    • (1993) Geochim. Cosmo-chim. Acta , vol.57 , pp. 2563-2570
    • Canfield, D.E.1    Thamdrup, B.2    Hansen, J.W.3
  • 10
    • 0029988977 scopus 로고    scopus 로고
    • Depth profile of sulfate-reducing bacterial ribosomal RNA and mercury methylation in an estuarine sediment
    • Devereux, R., M.R. Winfrey, J. Winfrey and D.A. Stahl. 1996. Depth profile of sulfate-reducing bacterial ribosomal RNA and mercury methylation in an estuarine sediment. FEMS Microbiol. Ecol. 20: 23–31.
    • (1996) FEMS Microbiol. Ecol. , vol.20 , pp. 23-31
    • Devereux, R.1    Winfrey, M.R.2    Winfrey, J.3    Stahl, D.A.4
  • 11
    • 0030302999 scopus 로고    scopus 로고
    • S cycle: Characterization of natural communities of sulfate-reducing bacteria by 16S rRNA sequence comparisons
    • Devereux, R., M.E. Hines and D.A. Stahl. 1996. S cycle: Characterization of natural communities of sulfate-reducing bacteria by 16S rRNA sequence comparisons. Microb. Ecol. 32: 283–292.
    • (1996) Microb. Ecol. , vol.32 , pp. 283-292
    • Devereux, R.1    Hines, M.E.2    Stahl, D.A.3
  • 12
    • 0032189023 scopus 로고    scopus 로고
    • Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
    • Dojka, M.A., P. Hugenholtz, S.K. Haack and N.R. Pace. 1998. Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl. Environ. Microbiol. 64: 3869–3877.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3869-3877
    • Dojka, M.A.1    Hugenholtz, P.2    Haack, S.K.3    Pace, N.R.4
  • 13
    • 0030872620 scopus 로고    scopus 로고
    • Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
    • Godon, J.J., E. Zumstein, P. Dabert, F. Habouzit and R. Moletta. 1997. Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl. Environ. Microbiol. 63: 2802–2813.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2802-2813
    • Godon, J.J.1    Zumstein, E.2    Dabert, P.3    Habouzit, F.4    Moletta, R.5
  • 14
    • 0022396088 scopus 로고
    • Some reflections on microbial competitiveness among heterotrophic bacteria
    • Gottschal, J.C. 1985. Some reflections on microbial competitiveness among heterotrophic bacteria. Antonie van Leeuwenhoek 51: 473–494.
    • (1985) Antonie van Leeuwenhoek , vol.51 , pp. 473-494
    • Gottschal, J.C.1
  • 15
    • 0040336333 scopus 로고    scopus 로고
    • Novel euryarcha-eotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms
    • Groβkopf, R., S. Stubner and W. Liesack. 1998. Novel euryarcha-eotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl. Environ. Microbiol. 64: 4983–4989.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4983-4989
    • Groβkopf, R.1    Stubner, S.2    Liesack, W.3
  • 16
    • 0028071557 scopus 로고
    • Collection of small subunit (16S and 16S-like) ribosomal RNA structures
    • Gutell, R.R. 1994. Collection of small subunit (16S and 16S-like) ribosomal RNA structures. Nucleic Acids Res. 22: 3502–3507.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 3502-3507
    • Gutell, R.R.1
  • 17
    • 84986849820 scopus 로고
    • The sulfur cycle of a coastal marine sediment (Limfjorden, Denmark)
    • Jørgensen, B.B. 1977. The sulfur cycle of a coastal marine sediment (Limfjorden, Denmark). Limnol. Oceanogr. 22: 814–832.
    • (1977) Limnol. Oceanogr. , vol.22 , pp. 814-832
    • Jørgensen, B.B.1
  • 18
    • 0034509027 scopus 로고    scopus 로고
    • Methanogenic activities on rice roots and plant residue and their contributions to methanogenesis in wetland rice field soil
    • Kaku, N., A. Ueki, H. Fujii and K. Ueki. 2000. Methanogenic activities on rice roots and plant residue and their contributions to methanogenesis in wetland rice field soil. Soil Biol. Biochem. 32: 2001–2010.
    • (2000) Soil Biol. Biochem. , vol.32 , pp. 2001-2010
    • Kaku, N.1    Ueki, A.2    Fujii, H.3    Ueki, K.4
  • 19
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin, S. and S.F. Altschul. 1990. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl. Acad. Sci. USA 87: 2264–2268.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 20
    • 84951577453 scopus 로고
    • Utilization of hydrogen, acetate, and “noncom-petitive” substrates by methanogenic bacteria in marine sediments
    • King, G.M. 1984. Utilization of hydrogen, acetate, and “noncom-petitive” substrates by methanogenic bacteria in marine sediments. Geomicrobiol. J. 3: 275–306.
    • (1984) Geomicrobiol. J. , vol.3 , pp. 275-306
    • King, G.M.1
  • 21
    • 0344765523 scopus 로고    scopus 로고
    • Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization
    • Lobet-Brossa, E., R. Rossellò-Mora and R. Amann. 1998. Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization. Appl. Environ. Mi-crobiol. 64: 2691–2696.
    • (1998) Appl. Environ. Mi-crobiol. , vol.64 , pp. 2691-2696
    • Lobet-Brossa, E.1    Rossellò-Mora, R.2    Amann, R.3
  • 22
    • 0000816705 scopus 로고
    • Rapid assay for microbially reducible ferric iron in aquatic sediments
    • Lovley, D.R. and E.J.P. Phillips. 1987. Rapid assay for microbially reducible ferric iron in aquatic sediments. Appl. Environ. Microbiol. 52: 751–757.
    • (1987) Appl. Environ. Microbiol. , vol.52 , pp. 751-757
    • Lovley, D.R.1    Phillips, E.J.P.2
  • 24
    • 0034942587 scopus 로고    scopus 로고
    • Use of 16S rRNA-targeted oligonucleotide probes to investigate the distribution of sulfate-reducing bacteria in estuarine sediments
    • Purdy, K.J., D.B. Nedwell, T.M. Embley and S. Takii. 2001. Use of 16S rRNA-targeted oligonucleotide probes to investigate the distribution of sulfate-reducing bacteria in estuarine sediments. FEMS Microbiol. Ecol. 36: 165–168.
    • (2001) FEMS Microbiol. Ecol. , vol.36 , pp. 165-168
    • Purdy, K.J.1    Nedwell, D.B.2    Embley, T.M.3    Takii, S.4
  • 25
    • 0036188405 scopus 로고    scopus 로고
    • Comparison of the molecular diversity of the methanogenic community at the freshwater and marine ends of a U.K. estuary
    • Purdy, K.J., M.A. Munson, D.B. Nedwell and T.M. Embley. 2002. Comparison of the molecular diversity of the methanogenic community at the freshwater and marine ends of a U.K. estuary. FEMS Microbiol. Ecol. 39: 17–21.
    • (2002) FEMS Microbiol. Ecol. , vol.39 , pp. 17-21
    • Purdy, K.J.1    Munson, M.A.2    Nedwell, D.B.3    Embley, T.M.4
  • 26
    • 0037721420 scopus 로고    scopus 로고
    • Use of 16S rRNA-targeted oligonucleotide probes to investigate function and phylogeny of sulphate-reducing bacteria and methanogenic archaea in a UK estuary
    • Purdy, K.J., M.A. Munson, T. Cresswell-Maynard, D.B. Nedwell and T.M. Embley. 2003. Use of 16S rRNA-targeted oligonucleotide probes to investigate function and phylogeny of sulphate-reducing bacteria and methanogenic archaea in a UK estuary. FEMS Microbiol. Ecol. 44: 361–371.
    • (2003) FEMS Microbiol. Ecol. , vol.44 , pp. 361-371
    • Purdy, K.J.1    Munson, M.A.2    Cresswell-Maynard, T.3    Nedwell, D.B.4    Embley, T.M.5
  • 27
    • 0035158607 scopus 로고    scopus 로고
    • Quantitative molecular analysis of the microbial community in marine Arctic sediments (Svalbard)
    • Ravenschlag, K., K. Sahm and R. Amann. 2001. Quantitative molecular analysis of the microbial community in marine Arctic sediments (Svalbard). Appl. Environ. Microbiol. 67: 387–395.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 387-395
    • Ravenschlag, K.1    Sahm, K.2    Amann, R.3
  • 28
    • 4644260588 scopus 로고    scopus 로고
    • Ecology and microbial structures of archaeal/bacterial strings-of-pearls communities and archaeal relatives thriving in cold sulfidic springs
    • Rudolph, C., C. Moissl, R. Henneberger and R. Huber. 2004. Ecology and microbial structures of archaeal/bacterial strings-of-pearls communities and archaeal relatives thriving in cold sulfidic springs. FEMS Microbiol. Ecol. 50: 1–11.
    • (2004) FEMS Microbiol. Ecol. , vol.50 , pp. 1-11
    • Rudolph, C.1    Moissl, C.2    Henneberger, R.3    Huber, R.4
  • 29
    • 0002112578 scopus 로고    scopus 로고
    • Temperature dependnce and rates of sulfate reduction in cold sediments of Svalbard, Arctic ocean
    • Sagemann, J., B.B. Jørgensen and O. Greeff. 1998. Temperature dependnce and rates of sulfate reduction in cold sediments of Svalbard, Arctic ocean. Geomicrobiol. J. 15: 85–100.
    • (1998) Geomicrobiol. J. , vol.15 , pp. 85-100
    • Sagemann, J.1    Jørgensen, B.B.2    Greeff, O.3
  • 31
    • 0020342829 scopus 로고
    • Sulfate reduction and methanogenesis in the sediment of a saltmarsh on the East coast of the United Kingdom
    • Senior, E., B. Lindström, I.M. Banet and D.B. Nedwell. 1982. Sulfate reduction and methanogenesis in the sediment of a saltmarsh on the East coast of the United Kingdom. Appl. Environ. Microbiol. 43: 987–996.
    • (1982) Appl. Environ. Microbiol. , vol.43 , pp. 987-996
    • Senior, E.1    Lindström, B.2    Banet, I.M.3    Nedwell, D.B.4
  • 32
    • 0002864159 scopus 로고
    • Cell fractionation
    • In P. Gerhardt, R.G.E. Murray, W.A. Wood and N.R. Krieg (ed.) American Society for Microbiology, Washington, D.C
    • Sprott, G.D., S.F. Koval and C.A. Schnaitman. 1994. Cell fractionation, p. 72–103. In P. Gerhardt, R.G.E. Murray, W.A. Wood and N.R. Krieg (ed.), Methods for general and molecular bacteriology. American Society for Microbiology, Washington, D.C.
    • (1994) Methods for general and molecular bacteriology. , pp. 72-103
    • Sprott, G.D.1    Koval, S.F.2    Schnaitman, C.A.3
  • 34
    • 33847670407 scopus 로고
    • Ferrozine; a new spectrophometric reagent for iron
    • Stookey, L.L. 1970. Ferrozine; a new spectrophometric reagent for iron. Anal. Chem. 42: 779–781.
    • (1970) Anal. Chem. , vol.42 , pp. 779-781
    • Stookey, L.L.1
  • 35
    • 0344035670 scopus 로고    scopus 로고
    • Genetic diversity of archaea in deep-sea hydrothermal vent environments
    • Takai, K. and K. Horikoshi. 1999. Genetic diversity of archaea in deep-sea hydrothermal vent environments. Genetics 152: 1285–1297.
    • (1999) Genetics , vol.152 , pp. 1285-1297
    • Takai, K.1    Horikoshi, K.2
  • 36
    • 0034371010 scopus 로고    scopus 로고
    • Microbial manganese and iron reduction in aquatic sediments
    • Thamdrup, B. 2000. Microbial manganese and iron reduction in aquatic sediments. Adv. Microb. Ecol. 16: 41–84.
    • (2000) Adv. Microb. Ecol. , vol.16 , pp. 41-84
    • Thamdrup, B.1
  • 37
    • 0028562329 scopus 로고
    • Manganese, iron, and sulfur cycling in a coastal marine sediment, Aarhus Bay, Denmark
    • Thamdrup, B., H. Fossing and B.B. Jørgensen. 1994. Manganese, iron, and sulfur cycling in a coastal marine sediment, Aarhus Bay, Denmark. Geochim. Cosmochim. Acta 58: 5115–5129.
    • (1994) Geochim. Cosmochim. Acta , vol.58 , pp. 5115-5129
    • Thamdrup, B.1    Fossing, H.2    Jørgensen, B.B.3
  • 38
    • 0033933788 scopus 로고    scopus 로고
    • Microbial manganese and sulfate reduction in black sea shelf sediments
    • Thamdrup, B., R. RossellóMora and R. Amann. 2000. Microbial manganese and sulfate reduction in black sea shelf sediments. Appl. Environ. Microbiol. 66: 2888–2897.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2888-2897
    • Thamdrup, B.1    RossellóMora, R.2    Amann, R.3
  • 39
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., D.G. Higgins and T.J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673- 4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 40
    • 0032868072 scopus 로고    scopus 로고
    • Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments
    • Vetriani, C., H.W. Jannasch, B.J. MacGregor, D.A. Stahl and A.L. Reysenbach. 1999. Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments. Appl. Environ. Microbiol. 65: 4375–4384.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4375-4384
    • Vetriani, C.1    Jannasch, H.W.2    MacGregor, B.J.3    Stahl, D.A.4    Reysenbach, A.L.5
  • 41
    • 0033759661 scopus 로고    scopus 로고
    • Molecular characterization of bacterial populations in petroleum-contaminated groundwater discharged from underground crude-oil-storage cavities
    • Watanabe, K., K. Watanabe, Y. Kodama, K. Syutsubo and S. Harayama. 2000. Molecular characterization of bacterial populations in petroleum-contaminated groundwater discharged from underground crude-oil-storage cavities. Appl. Environ. Microbiol. 66: 4803–4809.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4803-4809
    • Watanabe, K.1    Watanabe, K.2    Kodama, Y.3    Syutsubo, K.4    Harayama, S.5
  • 42
    • 0036322440 scopus 로고    scopus 로고
    • Diversity, abundance, and activity of archaeal populations in oil-contaminated groundwater accumulated at the bottom of an underground crude oil storage cavity
    • Watanabe, K., Kodama, N. Hamamura, and N. Kaku. 2002. Diversity, abundance, and activity of archaeal populations in oil-contaminated groundwater accumulated at the bottom of an underground crude oil storage cavity. Appl. Environ. Microbiol. 68: 3899–3907.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3899-3907
    • Watanabe, K.1    Kodama2    Hamamura, N.3    Kaku, N.4
  • 43
    • 0001543470 scopus 로고
    • The Methanogenic bacteria
    • 2nd Ed In A. Balows, H.G. Trüper, M. Dworkin, W. Harder and K. H. Schleifer (ed.) Springer-Verlag, N.Y
    • Whitman, W.B., T.L. Bowen and D.R. Boone. 1992. The Methanogenic bacteria, p. 719–767. In A. Balows, H.G. Trüper, M. Dworkin, W. Harder and K. H. Schleifer (ed.), The Prokaryotes: a handbook on the biology of bacteria, 2nd Ed, Volume I. Springer-Verlag, N.Y.
    • (1992) The Prokaryotes: a handbook on the biology of bacteria , vol.1 , pp. 719-767
    • Whitman, W.B.1    Bowen, T.L.2    Boone, D.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.