Differential regulation of multiple alternatively spliced transcripts of MyoD

Gene

Volumn 391, Issue 1-2, 2007, Pages 178-185

  Fernandes, Jorge M O ^a   Kinghorn, James R ^a   Johnston, Ian A ^a  

^a UNIVERSITY OF ST ANDREWS   (United Kingdom)

Author keywords

Alternative splicing; Muscle regulatory factor; Myogenesis; Myogenic factor 3 (Myf3); Takifugu rubripes; Teleost fish

Indexed keywords

ISOPROTEIN; MYOD1 PROTEIN; PROTEIN SUBUNIT; RNA;

ALTERNATIVE RNA SPLICING; AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; CHICKEN; CONTROLLED STUDY; DEVELOPMENTAL STAGE; EMBRYO; EMBRYO DEVELOPMENT; EXON; FAST MUSCLE FIBER; GENE; GENE EXPRESSION REGULATION; GENE INSERTION; GENETIC ANALYSIS; HUMAN; INTRON; MOUSE; MUSCLE DEVELOPMENT; MYOD GENE; MYOD1 ALPHA GENE; MYOD1 GAMMA GENE; MYOTOME; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN DOMAIN; PUFFER FISH; QUANTITATIVE ANALYSIS; RNA ANALYSIS; RNA GENE; SEQUENCE HOMOLOGY; SLOW MUSCLE FIBER; STOP CODON; SYNTENY; TRANSCRIPTION REGULATION; TRANSCRIPTOMICS; XENOPUS; ZEBRA FISH;

ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; ANIMALS; CLONING, MOLECULAR; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MOLECULAR SEQUENCE DATA; MUSCLE FIBERS, FAST-TWITCH; MUSCLE FIBERS, SLOW-TWITCH; MYOD PROTEIN; PROTEIN ISOFORMS; RNA, MESSENGER; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TAKIFUGU; TRANSCRIPTION, GENETIC;

DANIO RERIO; TAKIFUGU RUBRIPES; TELEOSTEI; TETRAODONTIDAE; VERTEBRATA;

EID: 33847645363     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2006.12.015     Document Type: Article

References (32)

1. Andres V., and Walsh K. Myogenin expression, cell cycle withdrawal, and phenotypic differentiation are temporally separable events that precede cell fusion upon myogenesis. J. Cell Biol. 132 (1996) 657-666
2. Aparicio S., et al. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297 (2002) 1301-1310
3. Bergstrom D.A., and Tapscott S.J. Molecular distinction between specification and differentiation in the myogenic basic helix-loop-helix transcription factor family. Mol. Cell. Biol. 21 (2001) 2404-2412
4. Blackwell T.K., and Weintraub H. Differences and similarities in DNA-binding preferences of MyoD and E2A protein complexes revealed by binding site selection. Science 250 (1990) 1104-1110
5. Conti E., and Izaurralde E. Nonsense-mediated mRNA decay: molecular insights and mechanistic variations across species. Curr. Opin. Cell Biol. 17 (2005) 316-325
6. Coutelle O., Blagden C.S., Hampson R., Halai C., Rigby P.W., and Hughes S.M. Hedgehog signalling is required for maintenance of myf5 and myoD expression and timely terminal differentiation in zebrafish adaxial myogenesis. Dev. Biol. 236 (2001) 136-150
7. Davis R.L., and Weintraub H. Acquisition of myogenic specificity by replacement of three amino acid residues from MyoD into E12. Science 256 (1992) 1027-1030
8. Devoto S.H., Melancon E., Eisen J.S., and Westerfield M. Identification of separate slow and fast muscle precursor cells in vivo, prior to somite formation. Development 122 (1996) 3371-3380
9. Fernandes J.M., et al. A genomic approach to reveal novel genes associated with myotube formation in the model teleost, Takifugu rubripes. Physiol. Genomics 22 (2005) 327-338
10. Fernandes J.M., Kinghorn J.R., and Johnston I.A. Characterization of two paralogous muscleblind-like genes from the tiger pufferfish (Takifugu rubripes). Comp. Biochem. Physiol., B 146 (2007) 10.1016/j.cbpb.2006.10.100
11. Fernandes J.M., et al. Myogenin in model puffer fish species: comparative genomic analysis and thermal plasticity of expression during early development. Comp. Biochem. Physiol. D 1 (2006) 35-45
12. Groves J.A., Hammond C.L., and Hughes S.M. Fgf8 drives myogenic progression of a novel lateral fast muscle fibre population in zebrafish. Development 132 (2005) 4211-4222
13. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98
14. Hasty P., et al. Muscle deficiency and neonatal death in mice with a targeted mutation in the myogenin gene. Nature 364 (1993) 501-506
15. Ishibashi J., Perry R.L., Asakura A., and Rudnicki M.A. MyoD induces myogenic differentiation through cooperation of its NH2- and COOH-terminal regions. J. Cell Biol. 171 (2005) 471-482
16. Jaillon O., et al. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431 (2004) 946-957
17. Johnston I.A., et al. Rapid evolution of muscle fibre number in post-glacial populations of Arctic charr Salvelinus alpinus. J. Exp. Biol. 207 (2004) 4343-4360
18. Kassar-Duchossoy L., et al. Mrf4 determines skeletal muscle identity in Myf5:Myod double-mutant mice. Nature 431 (2004) 466-471
19. Lassar A.B., et al. Functional activity of myogenic HLH proteins requires hetero-oligomerization with E12/E47-like proteins in vivo. Cell 66 (1991) 305-315
20. Lewis B.P., Green R.E., and Brenner S.E. Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 189-192
21. Macqueen D.J., and Johnston I.A. A novel salmonid myoD gene is distinctly regulated during development and probably arose by duplication after the genome tetraploidization. FEBS Lett. 580 (2006) 4996-5002
22. Meedel T.H., Farmer S.C., and Lee J.J. The single MyoD family gene of Ciona intestinalis encodes two differentially expressed proteins: implications for the evolution of chordate muscle gene regulation. Development 124 (1997) 1711-1721
23. Mendell J.T., Sharifi N.A., Meyers J.L., Martinez-Murillo F., and Dietz H.C. Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise. Nat. Genet. 36 (2004) 1073-1078
24. Reese M.G., Eeckman F.H., Kulp D., and Haussler D. Improved splice site detection in Genie. J. Comput. Biol. 4 (1997) 311-323
25. Rudnicki M.A., Schnegelsberg P.N., Stead R.H., Braun T., Arnold H.H., and Jaenisch R. MyoD or Myf-5 is required for the formation of skeletal muscle. Cell 75 (1993) 1351-1359
26. Tan X., and Du S.J. Differential expression of two MyoD genes in fast and slow muscles of gilthead seabream (Sparus aurata). Dev. Genes Evol. 212 (2002) 207-217
27. Tapscott S.J. The circuitry of a master switch: Myod and the regulation of skeletal muscle gene transcription. Development 132 (2005) 2685-2695
28. Tintignac L.A., et al. Mutant MyoD lacking Cdc2 phosphorylation sites delays M-phase entry. Mol. Cell. Biol. 24 (2004) 1809-1821
29. Wagner A. Birth and death of duplicated genes in completely sequenced eukaryotes. Trends Genet. 17 (2001) 237-239
30. Weintraub H., et al. The myoD gene family: nodal point during specification of the muscle cell lineage. Science 251 (1991) 761-766
31. Weintraub H., et al. Muscle-specific transcriptional activation by MyoD. Genes Dev. 5 (1991) 1377-1386
32. Weinberg E.S., et al. Developmental regulation of zebrafish MyoD in wild-type, no tail and spadetail embryos. Development 122 (1996) 271-280