Generation of an improved cytogenetic and comparative map of Bos taurus chromosome BTA27

Chromosome Research

Volumn 15, Issue 2, 2007, Pages 203-213

  Goldammer, Tom ^a   Brunner, Ronald M ^a   Weikard, Rosemarie ^a   Kuehn, Christa ^a   Wimmers, Klaus ^a  

^a LEIBNIZ INSTITUTE FOR FARM ANIMAL BIOLOGY FBN   (Germany)

Author keywords

Bos; BTA27; Cattle; Comparative mapping; Fluorescence in situ hybridization FISH; Homo; Human; Mouse; Mus

Indexed keywords

ARTICLE; CATTLE; CHROMOSOME; COMPARATIVE GENE MAPPING; COMPARATIVE GENOMIC HYBRIDIZATION; COMPUTER MODEL; CONTROLLED STUDY; CYTOGENETICS; FLUORESCENCE IN SITU HYBRIDIZATION; GENE LOCUS; GENE SEQUENCE; HUMAN; HYBRID CELL; MOUSE; MOUSE STRAIN; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

ANIMALS; CATTLE; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CHROMOSOMES, HUMAN, PAIR 4; CHROMOSOMES, HUMAN, PAIR 8; CHROMOSOMES, MAMMALIAN; CYTOGENETICS; ELECTROPHORESIS, AGAR GEL; GENE LIBRARY; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; MICE; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

BOS; BOS TAURUS; HOMO SAPIENS; MUS MUSCULUS;

EID: 33847637985     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-006-1113-y     Document Type: Article

References (24)

1. Barendse W, Vaiman D, Kemp SJ et al. (1997) A medium-density genetic linkage map of the bovine genome. Mammal Genome 8: 21-28.
2. Chevalet C, Corpet F (1986) Statistical decision rules concerning synteny or independence between markers. Cytogenet Cell Genet 43: 132-139.
3. De Givry S, Bouchez M, Chabrier P, Milan D, Schiex T (2005) CARHTA GENE: multipopulation integrated genetic and radiation hybrid mapping. Bioinformatics 21: 1703-1704.
4. Di Berardino D, Di Meo GP, Hayes H, Gallagher D, Iannuzzi L (coordinator), eds. (2001) ISCNDB 2000 - International System for Chromosome Nomenclature of Domestic Bovids. Cytogenet Cell Genet 92: 283-299.
5. Everts-van der Wind A, Kata SR, Band MR et al. (2004) A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates. Genome Res 14: 1424-1437.
6. Everts-van der Wind A, Larkin DM, Green CA et al. (2005) A high-resolution whole-genome cattleYhuman comparative map reveals details of mammalian chromosome evolution. Proc Natl Acad Sci USA 102: 18526-18531.
7. Gallagher DS, Ryan AM, Diamond G, Bevins CL, Womack JE (1995) Somatic cell mapping of beta-defensin genes to cattle syntenic group U25 and fluorescence in situ localization to chromosome 27. Mammal Genome 6: 554-556.
8. Goldammer T, Kata SR, Brunner RM et al. (2004) High-resolution comparative mapping between human chromosomes 4 and 8 and bovine chromosome 27 provides genes and segments serving as positional candidates for udder health in cattle. Genomics 84: 696-706.
9. Hayes H (1995) Chromosome painting with human chromosome-specific DNA libraries reveals the extent and distribution of conserved segments in bovine chromosomes. Cytogenet Cell Genet 71: 168-174.
10. Hayes H, Di Meo GP, Gautier M, Laurent P, Eggen A, Iannuzzi L (2000) Localization by FISH of the 31 Texas nomenclature type I markers to both Q- and R-banded bovine chromosomes. Cytogenet Cell Genet 90: 315-320.
11. Iannuzzi L, Gallagher DS, Di Meo GP, Diamond G, Bevins CL, Womack JE (1996) High-resolution FISH mapping of beta-defensin genes to river buffalo and sheep chromosomes suggests a chromosome discrepancy in cattle standard karyotypes. Cytogenet Cell Genet 75: 10-13.
12. Itoh T, Watanabe T, Ihara N et al. (2005) A comprehensive radiation hybrid map of the bovine genome comprising 5593 loci. Genomics 85: 413-424.
13. Jann O, Aerts J, Jones M et al. (2006) A second generation radiation hybrid map to aid the assembly of the bovine genome sequence. BMC Genomics 7: 283.
14. Larkin DM, Everts-van der Wind A, Rebeiz M et al. (2003) A cattleYhuman comparative map built with cattle BAC-ends and human genome sequence. Genome Res 13: 1966-1972.
15. Messer LA, Wang L, Tuggle CK et al. (1997) Mapping of the melatonin receptor 1a (MTNR1A) gene in pigs, sheep, and cattle. Mammal Genome 8: 368-370.
16. Pinkel D, Straume T, Gray JW (1986) Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridisation. Proc Natl Acad Sci USA 83: 2934-2938.
17. Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132: 365-386.
18. Sonstegard TS, Garrett WM, Ashwell MS, Bennett GL, Kappes SM, Van Tassell CP (2000) Comparative map alignment of BTA27 and HSA4 and 8 to identify conserved segments of genome containing fat deposition QTL. Mammal Genome 11: 682-688.
19. Tetens J, Goldammer T, Maddox J, Cockett N, Leeb T, Drögemüller C (2007) A radiation hybrid map of sheep chromosome 23 based on ovine BAC end sequence. Anim Genet (In press).
20. Wain HM, Bruford EA, Lovering RC, Lush MJ, Wright MW, Povey S (2002) Guidelines for human gene nomenclature. Genomics 79: 464-470.
21. Williams JL, Eggen A, Ferretti L et al. (2002) A bovine whole-genome radiation hybrid panel and outline map. Mammal Genome 13: 469-474.
22. Womack JE, Moll YD (1986) Gene map of the cow: conservation of linkage with mouse and man. J Hered 77: 2-7.
23. Womack JE, Johnson JS, Owens EK et al. (1997) A whole-genome radiation hybrid panel for bovine gene mapping. Mammal Genome 8: 854-856.
24. Zhu B, Smith JA, Tracey SM et al. (1999) A 5x genome coverage bovine BAC library: production, characterization, and distribution. Mammal Genome 10: 706-709.