Comparative map alignment of BTA27 and HSA4 and 8 to identify conserved segments of genome containing fat deposition QTL

Mammalian Genome

Volumn 11, Issue 8, 2000, Pages 682-688

  Sonstegard, Tad S ^a   Garrett, Wes M ^a   Ashwell, Melissa S ^a   Bennett, Gary L ^b   Kappes, Steven M ^b   Van Tassell, Curtis P ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CATTLE; CHROMOSOME MAP; FLUORESCENCE IN SITU HYBRIDIZATION; GENE AMPLIFICATION; GENE MAPPING; GENOME; LIPID STORAGE; NONHUMAN; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT;

ADIPOSE TISSUE; ANIMALS; CATTLE; CHROMOSOME MAPPING; CHROMOSOMES; CHROMOSOMES, HUMAN, PAIR 1; CHROMOSOMES, HUMAN, PAIR 8; DNA; HUMANS; HYBRID CELLS; IN SITU HYBRIDIZATION, FLUORESCENCE; MICROSATELLITE REPEATS; PHYSICAL CHROMOSOME MAPPING; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT, HERITABLE; SEQUENCE ALIGNMENT;

BOS TAURUS; BOVINAE; MAMMALIA;

EID: 0033854198     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s003350010130     Document Type: Article

References (36)

1. Allschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215, 403-410
2. Ashwell MS, Da Y, VanRaden PM, Rexroad CE Jr, Miller RH (1998) Detection of putative loci affecting conformational type traits in an elite population of United States Holsteins using microsatellite markers. J Dairy Sci 81, 1120-1125
3. Benson D, Lipman DJ, Ostell J (1993) Genbank. Nucleic Acids Res 21, 2963-2965
4. Bishop MD, Kappes SM, Keele JW, Stone RJ, Sunden SL, et al. (1994) A genetic linkage map for cattle. Genetics 136, 619-639
5. Casas E, Keele JW, Shackelford SD, Koohmaraie M, Sonstegard TS, et al. (1998) Association of the muscle hypertrophy with carcass traits in beef cattle. J Anim Sci 76, 468-473
6. Casas E, Shackelford SD, Keele JW, Stone RT, Kappes SM, et al. (2000) Quantitative trait loci affecting growth and carcass composition in cattle segregating alternative forms of myostatin. J Anim Sci 78, 560-569
7. DiBerardino D, Iannuzzi L (1982) Detailed description of R-banded bovine chromosomes. J Hered 73, 434-438
8. Fisher SR, Beever JE, Lewin HA (1997) Genetic mapping of five human chromosome 4 orthologues to bovine chromosomes 6 and 17. Anim Genet 28, 253-257
9. Gallagher Jr DS, Ryan AM, Diamond G, Bevins CL, Womack JE (1995) Somatic cell mapping of β-defensin genes to cattle syntenic group U25 and fluorescence in situ localization to Chromosome 27. Mamm Genome 6, 554-556
10. Green P, Falls K, Crooks S (1990) Documentation for CRI-MAP, version 2.4. Washington University School of Medicine. St. Louis, Mo.
11. Guerin G, Eggen A, Vaiman D, Nocary M, Laurent P, et al. (1994) Further characterization of a somatic cell hybrid panel: ten new assignments to the bovine genome. Anim Genet 25, 31-35
12. Haley CS, Knott SA (1992) A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity 69, 315-324
13. Hayes H (1995) Chromosome painting with human chromosome-specific DNA libraries reveals the extent and distribution of conserved segments in bovine chromosomes. Cytogenet Cell Genet 71, 168-174
14. Heaton MP, Lopez-Corrales NL, Smith TPL, Beattie LW, Laegroid WA (1997) Directed cosmid isolation of bovine markers for physical assignment by FISH. Anim Biotech 8, 167-177
15. Kappes SM, Keele JW, Stone RT, McGraw RA, Sonstegard TS, et al. (1997) A second generation linkage map of the bovine genome. Genome Res 7, 235-249
16. Keele JW, Wray JE, Behrens DW, Rohrer GA, Sunden SL, et al. (1994) A conceptual database model for genomic research. J. Comput Biol 1, 65-76
17. Kelley JM, Field CE, Craven MB, Bocskai D, Kim UJ, et al. (1999) High throughput direct end sequencing of BAC clones. Nucleic Acids Res 27, 1539-1546
18. Li L, Womack JE (1997) Somatic cell mapping of adenine translocator gene family in cattle. Mamm Genome 8, 773-774
19. Lichter P, Tang CC, Call K, Hermanson G, Evans GA, et al. (1990) High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science 247, 64-69
20. Martin-Burriel I, Goldhammer T, Elduque C, Lundin M, Barendse W, et al. (1997) Physical and linkage mapping of the bovine bone morphogenetic protein 1 on the evolutionary break region of BTA 8. Cytogenet Cell Genet 79, 179-183
21. Masabanda J, Kappes SM, Smith TP, Beattie CW, Fries R (1996) Mapping of a linkage group to the last bovine chromosome (BTA27) without an assignment. Mamm Genome 7, 229-230
22. Messer LA, Wang L, Tuggle CK, Yerle M, Chardon P, et al. (1997) Mapping of the melatonin receptor 1a (MTNR1A) gene in pigs, sheep, and cattle. Mamm Genome 8, 368-370
23. Rogers GW, Banos G, Sander-Nielson U (1999) Genetic correlations among protein yield, productive life, and type traits from the United States and diseases other than mastitis from Denmark and Sweden. J Dairy Sci 82, 1331-1338
24. Ryan AM, Womack JE (1995) Somatic cell mapping of the SKI protooncogene to bovine syntenic group U25. Mamm Genome 6, 92
25. Smith TPL, Alexander LJ, Sonstegard TS, Yoo J, Beattie CW, et al. (1996) Construction and characterization of a large insert bovine YAC library with five-fold genomic coverage. Mamm Genome 7, 155-156
26. Smith TPL, Lopez-Corrales NL, Kappes SM, Sonstegard TS (1997) Myostatin maps to the interval containing the bovine mh locus. Mamm Genome 8, 742-744
27. Solinas-Toldo S, Lengauer C, Fries R (1995) A comparative genome map of man and cattle. Genomics 27, 489-496
28. Sonstegard TS, Kappes S (1999a) Mapping of the SDHA locus to bovine chromosome 20. Anim Genet 30, 473
29. Sonstegard TS, Kappes SM (1999b) Mapping of the UCP1 locus to bovine chromosome 17. Anim Genet 30, 473
30. Sonstegard TS, Kappes SM, Keele JW, Smith TP, et al. (1998) Refinement of bovine chromosome 2 linkage map near the mh locus reveals rearrangements between the bovine and human genomes. Anim Genet 29, 341-347
31. Stone RT, Pulido JC, Duyk GM, Kappes SM, Keele JW, et al. (1995) A small-insert bovine genomic library highly enriched for microsatellite repeat sequences. Mamm Genome 6, 714-724
32. Tank PA, Pomp D (1994) Rapid communication: PCR-based Sau961 polymorphism in the bovine lipoprotein lipase gene. J Anim Sci 72, 3032
33. Threadgill DW, Womack JE (1991) Synteny mapping of human chromosome 8 loci in cattle. Anim Genet 22, 117-122
34. VanTassell CP, Ashwell MS, Sonstegard TS (1998) Investigation of a quantitative trait locus for dairy form in one family of Holsteins. J Dairy Sci 81(suppl. 1), 73.
35. Womack JE, Moll YD (1986) Gene map of the cow: conservation of linkage with mouse and man. J Hered 77, 2-7
36. Zhang N, Threadgill DW, Womack JE (1992) Synteny mapping in the bovine: genes human chromosome 4. Genomics 14, 131-136