Human ribosomal protein S13 inhibits splicing of its own pre-mRNA

Molecular Biology

Volumn 41, Issue 1, 2007, Pages 44-51

  Parakhnevitch, N M ^a   Ivanov, A V ^a   Malygin, A A ^a   Karpova, G G ^a  

^a INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

Author keywords

Enzymatic footprinting; Human ribosomal proteins; Human rpS13 pre mRNA; RNA protein interactions; Splicing regulation

Indexed keywords

ADENOVIRIDAE; MAMMALIA;

EID: 33847385559     PISSN: 00268933     EISSN: 16083245     Source Type: Journal    
DOI: 10.1134/S0026893307010074     Document Type: Article

References (36)

1. Ferreira-Cerca S., Poell G., Gleizes P.-E., Tschochner H., Milkereit P. 2005. Roles of eukaryotic ribosomal proteins in maturation and transport of pre-18S rRNA and ribosome function. Mol. Cell. 20, 263-275.
2. Wool I.G., Chan Y.-L., Glueck A. 1996. In: Translational Control. Eds. Hershey J.W.B., Mathews M.B., Sonenberg N. Cold Spring Harbor, NY: Cold Spring Harbor Lab. Press, pp. 685-732.
3. Lian Z., Liu J., Li L., Li X., Tufan N.L.S., Wu M.-C., Wang H.-Y., Arbuthot P., Kew M., Feitelson M.A. 2004. Human S15a expression is upregulated by hepatitis B virus X protein. Mol. Carcinogen. 40, 34-46.
4. Vaarala M.H., Porvari K.S., Kyllonen A., Mustonen M.V., Lukkarinen O., Vihko P.T. 1998. Several genes encoding ribosomal proteins are over-expressed in prostate-cancer cell lines: confirmation of L7a and L37 over-expression in prostate-cancer tissue samples. Int. J. Cancer. 78, 27-32.
5. Khanna N., Sen S., Sharma H., Singh N. 2003. S29 ribosomal protein induces apoptosis in H520 cells and sensitizes them to chemotherapy. Biochem. Biophys. Res. Commun. 304, 26-35.
6. Jang C.-Y., Lee J.Y., Kim J. 2004. RpS3, a DNA repair endonuclease and ribosomal protein, is involved in apoptosis. FEBS Lett. 560, 81-85.
7. Toeroek I., Herrmann-Horle D., Kiss I., Tick G., Speer G., Schmitt R., Mechler B.M. 1999. Down-regulation of rpS21, a putative translation initiation factor interacting with P40, produces viable Minute imagos and larval lethality with overgrown hematopoietic organs and imaginal discs. Mol. Cell. Biol. 19, 2308-2321.
8. Marygold S.J., Coelho C.M., Leevers S.J. 2005. Genetic analysis of RpL38 and RpL5, two Minute genes located in the centric heterochromatin of chromosome 2 of Drosophila melanogaster. Genetics. 169, 683-695.
9. Pogue-Geile K., Geiser J.R., Shu M., Miller C., Wool I.G., Meisler A.I., Pipas J.M. 1991. Ribosomal protein genes are overexpressed in colorectal cancer: Isolation of a cDNA clone encoding the human S3 ribosomal protein. Mol. Cell. Biol. 11, 3842-3849.
10. Barnard G.F., Staniunas R.J., Mori M., Puder M., Jessup M.J., Steele G.D.Jr., Chen L.B. 1993. Gastric and hepatocellular carcinomas do not overexpress the same ribosomal protein messenger RNAs as colonic carcinoma. Cancer Res. 53, 4048-4052.
11. Zhao Y., Sohn J.H., Warner J.R. 2003. Autoregulation in the biosynthesis of ribosomes. Mol. Cell. Biol. 23, 699-707.
12. Meyuhas O., Avni D., Shama S. 1996. In: Translational Control. Eds. Hershey J.W.B., Mathews M.B., Sonenberg N. Cold Spring Harbor, NY: Cold Spring Harbor Lab. Press, pp. 363-388.
13. Perry R.P. 2005. The architecture of mammalian ribosomal protein promoters. BMC Evol. Biol. 5, 15.
14. Avni D., Shama S., Loreni F., Meyuhas O. 1994. Vertebrate mRNAs with a 5′-terminal pyrimidine tract are candidates for translational repression in quiescent cells: Characterization of the translational cis-regulatory element. Mol. Cell. Biol. 14, 3822-3833.
15. Ivanov A.V., Malygin A.A., Karpova G.G. 2006. Eukaryotic ribosomal proteins: Interactions with their own pre-mRNAs and their involvement in splicing regulation. Mol. Biol. 40, 640-649.
16. Shi Y., Zhai H., Wang X., Han Z., Liu C., Lan M., Du J., Guo C., Zhang Y., Wu K., Fan D. 2004. Ribosomal proteins S13 and L23 promote multidrug resistance in gastric cancer cells by suppressing drug-induced apoptosis. Exp. Cell Res. 296, 337-346.
17. Saeboe-Larssen S., Lambertsson A. 1996. A novel Drosophila Minute locus encodes ribosomal protein S13. Genetics. 143, 877-885.
18. Malygin A.A., Baranovskaya O.I., Ivanov A.V., Karpova G.G. 2003. Expression and purification of human ribosomal proteins S3, S5, S10, S19, and S26. Protein Express. Purif. 28, 57-62.
19. Malygin A.A., Parakhnevitch N.M., Karpova G.G. 2005. Human ribosomal protein S13: Cloning, expression, refolding, and structural stability. Biochim. Biophys. Acta. 1747, 93-97.
20. Parakhnevich N.M., Malygin A.A., Karpova G.G. 2005. Human recombinant protein S16: Isolation, purification, refolding, and stability. Biokhimiya. 70, 941-946.
21. Ivanov A.V., Malygin A.A., Karpova G.G. 2004. Human robosomal S26 protein inhibits splicing of its own premRNA. Mol. Biol. 38, 676-683.
22. Ivanov A.V., Malygin A.A., Karpova G.G. 2002. Ribosomal protein binding with the first intron of the human rpS26 pre-mRNA stimulates its interaction with proteins extracted from HeLa cells. Mol. Biol. 36, 503-510.
23. Ivanov A.V., Malygin A.A., Karpova G.G. 2003. Interaction of human ribosomal protein S26 with fragments of its own mRNA and pre-mRNA in nuclear extracts of HeLa cells. Mol. Biol. 37, 900-905.
24. Clarke P.A. 1999. In: RNA-Protein Interaction Protocol. Ed. Haynes S.R. Totowa, NJ: Humana Press, pp. 73-92.
25. Wollenzien P. 1988. Isolation and identification of RNA cross-links. Methods Enzymol. 164, 319-329.
26. Chan C.Y., Lawrence C.E., Ding Y. 2005. Structure clustering features on the Sfold Web server. Bioinformatics. 21, 3926-3928.
27. (http://www.ebi.ac.uk/emboss/align)
28. Brunel C., Romby P. 2000. In: RNA-Ligand Interactions. Ed. Celander D.W. San Diego, CA: Academic Press, pp. 3-21.
29. Ivanov A.V., Malygin A.A., Karpova G.G. 2005. Human ribosomal protein S26 suppresses the splicing of its premRNA. Biochim. Biophys. Acta. 1727, 134-140.
30. Reese M.G., Eeckman F.H., Kulp D., Haussler D. 1997. Improved splice site detection in genie. J. Comp. Biol. 4, 311-323.
31. Jurica M.S., Moore M.J. 2003. Pre-mRNA splicing: Awash in sea of proteins. Mol. Cell. 12, 5-14.
32. Vilardell J., Warner J.R. 1997. Ribosomal protein L32 of Saccharomyces cerevisiae influences both the splicing of its own transcript and the processing of rRNA. Mol. Cell. Biol. 17, 1959-1965.
33. Mitrovich Q.M., Anderson P. 2000. Unproductively spliced ribosomal protein mRNAs are natural targets of mRNA surveillance in C. elegans. Genes Dev. 14, 2173-2184.
34. Caffarelli E., Fragapane P., Gehring C., Bozzoni I. 1987. The accumulation of mature RNA for the Xenopus laevis ribosomal protein L1 is controlled at the level of splicing and turnover of the precursor RNA. EMBO J. 6, 3493-3498.
35. Cuccurese M., Russo G., Russo A., Pietropaolo C. 2005. Alternative splicing and nonsense-mediated mRNA decay regulate mammalian ribosomal gene expression. Nucleic Acids Res. 33, 5965-5977.
36. Sambrook J., Fritsch E.F., Maniatis T. 1989. Molecular Cloning: A Laboratory Manual. Ed. Haynes S.R. Cold Spring Harbor, NY: Cold Spring Harbor Lab. Press.