Chlorella viruses contain genes encoding a complete polyamine biosynthetic pathway

Virology

Volumn 360, Issue 1, 2007, Pages 209-217

  Baumann, Sascha ^a   Sander, Adrianne ^a   Gurnon, James R ^b   Yanai Balser, Giane M ^b   Van Etten, James L ^b   Piotrowski, Markus ^a  

^a RUHR UNIVERSITY BOCHUM   (Germany)

^b UNIVERSITY OF NEBRASKA LINCOLN   (United States)

Author keywords

Agmatine iminohydrolase; Arginine decarboxylase; Chlorella viruses; N Carbamoylputrescine amidohydrolase; PBCV 1; Phycodnaviridae; Polyamines

Indexed keywords

AGMATINE; AMIDASE; ARGININE; ARGININE DECARBOXYLASE; GENE PRODUCT; HYDROLASE; N CARBAMOYLPUTRESCINE; ORNITHINE DECARBOXYLASE; POLYAMINE; PROTEIN AIH; PUTRESCINE; PUTRESCINE DERIVATIVE; SPERMIDINE SYNTHASE; UNCLASSIFIED DRUG;

ADC GENE; AIH GENE; ARABIDOPSIS; ARTICLE; CHLORELLA VIRUS; CONTROLLED STUDY; CPA GENE; ENZYME ANALYSIS; ENZYME SYNTHESIS; GENE EXPRESSION; GENETIC ANALYSIS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; ODC GENE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PSEUDOMONAS AERUGINOSA; VIRAL GENETICS; VIRUS GENE; VIRUS REPLICATION;

AMIDOHYDROLASES; ARGININE; BASE COMPOSITION; CHLORELLA; ESCHERICHIA COLI; GENE EXPRESSION; GENES, VIRAL; HYDROLASES; INSEMINATION, ARTIFICIAL, HOMOLOGOUS; PHYCODNAVIRIDAE; POLYAMINES; RECOMBINANT PROTEINS; SUBSTRATE SPECIFICITY; VIRAL PROTEINS;

ARABIDOPSIS THALIANA; CHLORELLA VIRUS; ESCHERICHIA COLI; PARAMECIUM BURSARIA CHLORELLA VIRUS 1; PHYCODNAVIRIDAE; PSEUDOMONAS AERUGINOSA;

EID: 33847292966     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2006.10.010     Document Type: Article

References (46)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
2. Ames B.N., and Dubin D.T. The role of polyamines in the neutralization of bacteriophage deoxyribonucleic acid. J. Biol. Chem. 235 (1960) 769-775
3. Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., and Struhl K. Current Protocols in Molecular Biology (2004), John Wiley and Sons, New York
4. Bubeck J.A., and Pfitzner A.J. Isolation and characterization of a new type of chlorovirus that infects an endosymbiotic Chlorella strain of the heliozoon Acanthocystis turfacea. J. Gen. Virol. 86 (2005) 2871-2877
5. Cohen S.S. A Guide to the Polyamines (1998), Oxford Univ. Press Inc., New York
6. Cohen S.S. Viruses. A Guide to the Polyamines (1998), Oxford Univ. Press Inc., New York 366-395
7. Cohen S.S., and McCormick F.P. Polyamines and virus multiplication. Adv. Virus Res. 24 (1979) 331-387
8. Cohen E., Arad S.M., Heimer Y.M., and Mizrahi Y. Polyamine biosynthetic enzymes in Chlorella: characterization of ornithine and arginine decarboxylase. Plant Cell Physiol. 24 (1983) 1003-1010
9. Cohen E., Arad S.M., Heimer Y.H., and Mizrahi Y. Polyamine biosynthetic enzymes in the cell cycle of Chlorella: correlation between ornithine decarboxylase and DNA synthesis at different light intensities. Plant Physiol. 74 (1984) 385-388
10. Dunigan D.D., Fitzgerald L.A., and Van Etten J.L. Phycodnaviruses: a peek at genetic diversity. Virus Res. 117 (2006) 119-132
11. Fitzgerald, L.A., Graves, M.V., Li, X., Feldblyum, T., Hartigan, J., Van Etten, J.L., in press-a. Sequence and annotation of the 314-kb MT325 and the 321-kb FR483 viruses that infect Chlorella Pbi. Virology. doi:10.1016/j.virol.2006.08.034
12. Fitzgerald, L.A., Graves, M.V., Li, X., Feldblyum, T., Nierman, W.C., Van Etten, J.L., in press-b. Sequence and annotation of the 369-kb NY-2A and the 345-kb AR158 viruses that infect Chlorella NC64A. Virology.doi:10.1016/j.virol.2006.08.033
13. Gibson W., and Roizman B. Compartmentalization of spermine and spermidine in the herpes simplex virion. Proc. Natl. Acad. Sci. U. S. A. 68 (1971) 2818-2821
14. Gibson W., van Breemen R., Fields A., LaFemina R., and Irmiere A. d,l-alpha-Difluoromethylornithine inhibits human cytomegalovirus replication. J. Virol. 50 (1984) 145-154
15. Goldstein D.A., Heby O., and Marton L.J. Biphasic stimulation of polyamine biosynthesis in primary mouse kidney cells by infection with polyoma virus: uncoupling from DNA and rRNA synthesis. Proc. Natl. Acad. Sci. U. S. A. 73 (1976) 4022-4026
16. Greco A., Calle A., Morfin F., Thouvenot D., Cayre M., Kindbeiter K., Martin L., Levillain O., and Diaz J.J. S-Adenosyl methionine decarboxylase activity is required for the outcome of herpes simplex virus type 1 infection and represents a new potential therapeutic target. FASEB J. 19 (2005) 1128-1130
17. Hanfrey C., Sommer S., Mayer M.J., Burtin D., and Michael A.J. Arabidopsis polyamine biosynthesis: absence of ornithine decarboxylase and the mechanism of arginine decarboxylase activity. Plant J. 27 (2001) 551-560
18. Illingworth C., Mayer M.J., Elliott K., Hanfrey C., Walton N.J., and Michael A.J. The diverse bacterial origins of the Arabidopsis polyamine biosynthetic pathway. FEBS Lett. 549 (2003) 26-30
19. Janowitz T., Kneifel H., and Piotrowski M. Identification and characterization of plant agmatine iminohydrolase, the last missing link in polyamine biosynthesis of plants. FEBS Lett. 544 (2003) 258-261
20. Kaiser A., Vollmert M., Tholl D., Graves M.V., Gurnon J.R., Xing W., Lisec A.D., Nickerson K.W., and Van Etten J.L. Chlorella virus PBCV-1 encodes a functional homospermidine synthase. Virology 263 (1999) 254-262
21. Kawasaki T., Tanaka M., Fujie M., Usami S., and Yamada T. Immediate early genes expressed in chlorovirus infections. Virology 318 (2004) 214-223
22. Lawrence J.G., and Ochman H. Amelioration of bacterial genomes: rates of change and exchange. J. Mol. Evol. 44 (1997) 383-397
23. Morehead T.A., Gurnon J.R., Adams B., Nickerson K.W., Fitzgerald L.A., and Van Etten J.L. Ornithine decarboxylase encoded by chlorella virus PBCV-1. Virology 301 (2002) 165-175
24. Nakada Y., and Itoh Y. Identification of the putrescine biosynthetic genes in Pseudomonas aeruginosa and characterization of agmatine deiminase and N-carbamoylputrescine amidohydrolase of the arginine decarboxylase pathway. Microbiology 149 (2003) 707-714
25. Nakada Y., Jiang Y., Nishijyo T., Itoh Y., and Lu C.D. Molecular characterization and regulation of the aguBA operon, responsible for agmatine utilization in Pseudomonas aeruginosa PAO1. J. Bacteriol. 183 (2001) 6517-6524
26. Nickerson K.W., and Lane L.C. Polyamine content of several RNA plant viruses. Virology 81 (1977) 455-459
27. Piotrowski M., Janowitz T., and Kneifel H. Plant C-N hydrolases and the identification of a plant N-carbamoylputrescine amidohydrolase involved in polyamine biosynthesis. J. Biol. Chem. 278 (2003) 1708-1712
28. Pohjanpelto P., Sekki A., Hukkanen V., and von Bonsdorff C.H. Polyamine depletion of cells reduces the infectivity of herpes simplex virus but not the infectivity of Sindbis virus. Life Sci. 42 (1988) 2011-2018
29. Raina A., Tuomi K., and Mantyjarvi R. Roles of polyamines in the replication of animal viruses. Med. Biol. 59 (1981) 428-432
30. Reisser W., Becker B., and Klein T. Studies on ultrastructure and host range of a Chlorella attacking virus. Protoplasma 135 (1986) 162-165
31. Reisser W., Burbank D.E., Meints S.M., Meints R.H., Becker B., and Van Etten J.L. A comparison of viruses infecting two different Chlorella-like green algae. Virology 167 (1988) 143-149
32. Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
33. Saeed A.I., Sharov V., White J., Li J., Liang W., Bhagabati N., Braisted J., Klapa M., Currier T., Thiagarajan M., Sturn A., Snuffin M., Rezantsev A., Popov D., Ryltsov A., Kostukovich E., Borisovsky I., Liu Z., Vinsavich A., Trush V., and Quackenbush J. TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34 (2003) 374-378
34. Shah R., Coleman C.S., Mir K., Baldwin J., Van Etten J.L., Grishin N.V., Pegg A.E., Stanley B.A., and Phillips M.A. Paramecium bursaria chlorella virus-1 encodes an unusual arginine decarboxylase that is a close homolog of eukaryotic ornithine decarboxylases. J. Biol. Chem. 279 (2004) 35760-35767
35. Smith T.A. Agmatine iminohydrolase in maize. Phytochemistry 8 (1969) 2111-2117
36. Sun L., Gurnon J.R., Adams B.J., Graves M.V., and Van Etten J.L. Characterization of a β-1,3-glucanase encoded by chlorella virus PBCV-1. Virology 276 (2000) 27-36
37. Theiss C., Bohley P., and Voigt J. Regulation by polyamines of ornithine decarboxylase activity and cell division in the unicellular green alga Chlamydomonas reinhardtii. Plant Physiol. 128 (2002) 1470-1479
38. Torget R., Lapi L., and Cohen S.S. Synthesis and accumulation of polyamines and S-adenosylmethionine in Chinese cabbage infected by turnip yellow mosaic virus. Biochem. Biophys. Res. Commun. 87 (1979) 1132-1139
39. Tyms A.S., Clarke J.R., Ford L., and Eloranta T. Polyamines and the growth of pathogenic viruses. In: Goldemberg S.H., and Algranati I.D. (Eds). The Biology and Chemistry of Polyamines (1990), IRL Press, Oxford 122-133
40. Van Etten J.L. Unusual life style of giant chlorella viruses. Annu. Rev. Genet. 37 (2003) 153-195
41. Van Etten J.L., Burbank D.E., Xia Y., and Meints R.H. Growth cycle of a virus, PBCV-1, that infects Chlorella-like algae. Virology 126 (1983) 117-125
42. Van Etten J.L., Burbank D.E., Joshi J., and Meints R.H. DNA synthesis in a Chlorella-like alga following infection with the virus PBCV-1. Virology 134 (1984) 443-449
43. Walters D.R. Polyamines and plant disease. Phytochemistry 64 (2003) 97-107
44. Wilson W.H., Van Etten J.L., Schroeder D.S., Nagasaki K., Burssaard C., Delaroque N., Bratbak G., and Suttle C. Phycodnaviridae. In: Fauqet C.M., Mayo M.A.M.J., Desselberger U., and Ball L.A. (Eds). Virus Taxonomy, VIIIth Report of the ICTV (2005), Elsevier/Academic Press, London 163-175
45. Yamada T., Onimatsu H., and Van Etten J.L. Chlorella viruses. Adv. Virus Res. 66 (2006) 293-336
46. Yanagisawa H., and Suzuki Y. Corn agmatine iminohydrolase. Purification and properties. Plant Physiol. 67 (1981) 697-700