Population structure of red porgy, Pagrus pagrus, in the Atlantic Ocean

Marine Biology

Volumn 150, Issue 6, 2007, Pages 1321-1332

  Ball, A O ^a   Beal, M G ^a   Chapman, R W ^a   Sedberry, G R ^a  

^a SOUTH CAROLINA DEPARTMENT OF NATURAL RESOURCES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FINGERPRINTING; FISH; GEOGRAPHICAL VARIATION; HOMOGENEITY; MITOCHONDRIAL DNA; POPULATION STRUCTURE; TEMPERATE ENVIRONMENT;

ATLANTIC OCEAN; ATLANTIC OCEAN (NORTHEAST); ATLANTIC OCEAN (NORTHWEST);

PAGRUS PAGRUS; SPARIDAE;

EID: 33847287695     PISSN: 00253162     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00227-006-0425-y     Document Type: Article

References (93)

1. Aboim MA, Menezes GM, Schlitt T, Rogers AD (2005) Genetic structure and history of populations of the deep-sea fish Helicolenus dactylopterus (Delaroche, 1809) inferred from mtDNA sequence analysis. Mol Ecol 14:1343-1354
2. Adcock GJ, Bernal Ramírez JH, Hauser L, Smith P, Carvalho GR (2000) Screening of DNA polymorphisms in samples of archived scales from New Zealand snapper. J Fish Biol 56:1283-1287
3. Allendorf FW, Phelps SR (1981) Use of allelic frequencies to describe population structure. Can J Fish Aquat Sci 38:1507-1514
4. Allmon WD (2001) Nutrients, temperature, disturbance, and evolution: a model for the late Cenozoic marine record of the western Atlantic. Palaeogeogr Palaeoclimatol Palaeoecol 166:9-26
5. Avise JC (2000) Phylogeography: the history and formation of species. Harvard University Press, Cambridge
6. Bagley MJ, Lindquist DG, Geller JB (1999) Microsatellite variation, effective population size, and population genetic structure of vermilion snapper, Rhomboplites aurorubens, of the southeastern USA. Mar Biol 134:609-620
7. Ball AO, Chapman RW (2003) Population genetic analysis of white shrimp, Litopenaeus setiferus, using microsatellite genetic markers. Mol Ecol 12:2319-2330
8. Ball AO, Sedberry GR, Wessel JH, III, Chapman RW (2003) Large-scale genetic differentiation of Pagrus pagrus in the Atlantic. J Fish Biol 62:1232-1237
9. Ball AO, Sedberry GR, Zatcoff MS, Chapman RW, Carlin JL (2000) Population structure of the wreckfish Polyprion americanus determined with microsatellite genetic markers. Mar Biol 137:1077-1090
10. Barans CA, Henry VJ Jr (1984) A description of the shelf edge groundfish habitat along the southeastern United States. NE Gulf Sci 7:77-96
11. Bargelloni L, Alarcon JA, Alvarez MC, Penzo E, Magoulas A, Reis C, Patarnello T (2003) Discord in the family Sparidae (Teleostei): divergent phylogeographical patterns across the Atlantic-Mediterranean divide. J Evol Biol 16:1149-1158
12. Batargias C, Dermitzakis E, Magoulas A, Zouros E (1999) Characterization of six polymorphic microsatellite markers in gilt-head seabream, Sparus aurata (Linnaeus 1758). Mol Ecol 8:897-898
13. Bauchot M-L, Hureau JC (1990) Sparidae. In: Quero JC, Hureau JC, Karrer C, Post A, Saldanha L (eds) Check-list of the fishes of the eastern tropical Atlantic (CLOFETA). JNICT, Lisbon, SEI, Paris, UNESCO, Paris, pp 808-809
14. Beaumariage DS (1969) Returns from the 1965 Schlitz tagging program, including a cumulative analysis of previous results. Marine Research Laboratory, Florida Department of Natural Resources, Division of Marine Resources, St. Petersburg
15. Berggren WA, Hollister CD (1974) Paleogeography, paleobiogeography, and the history of circulation in the Atlantic Ocean. In: Hay WW (ed) Studies in paleo-oceanography. Soc. Economic Paleontology Mineralogy, Special Publication, no. 20, pp 126-186
16. Bernal-Ramírez JH, Adcock GJ, Hauser L, Carvalho GR, Smith PJ (2003) Temporal stability of genetic population structure in the New Zealand snapper, Pagrus auratus, and relationship to coastal currents. Mar Biol 142:567-574
17. Bernardi G, Holbrook SJ, Schmitt RJ (2001) Gene flow at three spatial scales in a coral reef fish, the three-spot dascyllus, Dascyllus trimaculatus. Mar Biol 138:457-465
18. Bowen BW, Bass AL, Rocha LA, Grant WS, Robertson DR (2001) Phylogeography of the trumpetfishes (Aulostomus): ring species complex on a global scale. Evolution 55:1029-1039
19. Briggs JC (1974) Marine zoogeography. McGraw-Hill, New York Brown JR, Beckenbach AT, Smith MJ (1993) Intraspecific DNA sequence variation of the mitochondrial control region of white sturgeon (Acipenser transmontanus). Mol Biol Evol 10:326-341
20. Brown WM, George M Jr, Wilson AC (1979) Rapid evolution of animal mitochondrial DNA. Proc Natl Acad Sci USA 76:1967-1971
21. Carlin JL, Robertson DR, Bowen BW (2003) Ancient divergences and recent connections in two tropical Atlantic reef fishes Epinephelus adscensionis and Rypticus saponaceous (Percoidei: Serranidae). Mar Biol 143:1057-1069
22. Castro BM, Miranda LB (1998) Physical oceanography of the Wesern Atlantic continental shelf located between 4°N and 24°S. In: Robinson AR, Brink KH (eds) The sea. Wiley, New York, pp 209-251
23. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Evolution 21:550-570
24. Cronin TM, Dowsett HJ (1996) Biotic and oceanographic response to the Pliocene closing of the Central American isthmus. In: Jackson JBC, Budd AF, Coates AG (eds) Evolution and environment in tropical America. University of Chicago Press, Chicago, pp 76-104
25. Excoffier L (2004) Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model. Mol Ecol 13:853-864
26. Excoffier L, Laval G, Schneider S (2005) Arlequin (ver. 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47-50
27. Fauvelot C, Planes S (2002) Understanding origins of present-day genetic structure in marine fish: biologically or historically driven patterns? Mar Biol 141:773-788
28. Felsenstein J (1993) PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle
29. Fisher RA (1970) Statistical methods for research workers. Oliver and Boyd, Edinburgh
30. Ginsburg I (1952) Eight new fishes from the Gulf coast of the United States, with two new genera and notes on geographic distribution. J Wash Acad Sci 42:84-101
31. Gonzalez-Silvera A, Santamaria-del-Angel E, Garcia VMT, Carlos CAE, Garcia AE, Millán-Nuñez R, Muller-Karger F (2004) Biogeographical regions of the tropical and subtropical Atlantic Ocean of South America: classification based on pigment (CZCS) and chlorophyll-a (SeaWiFS) variability. Cont Shelf Res 24:983-1000
32. Guarniero I, Franzellitti S, Ungaro N, Tommasini S, Piccinetti C, Tinti F (2002) Control region haplotype variation in the central Mediterranean common sole indicates geographical isolation and population structuring in Italian stocks. J Fish Biol 60:1459-1474
33. Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48:361-372
34. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
35. Hanel R, Sturmbauer C (2000) Multiple recurrent evolution of trophic types in northeastern Atlantic and Mediterranean seabreams (Sparidae, Percoidei). J Mol Evol 50:276-283
36. Harris PJ, McGovern JC (1997) Changes in the life history of red porgy, Pagrus pagrus, from the southeastern United States, 1972-1994. Fish Bull 95:732-747
37. Haug GH, Tiedemann R (1998) Effect of the formation of the Isthmus of Panama on Atlantic Ocean thermohaline circulation. Nature 393:673-676
38. Hauser L, Ward RD (1998) Population identification in pelagic fish: the limits of molecular markers. In: Carvalho GR (ed) Advances in Molecular Ecology. NATO Advanced Science Institutes Series, series A, life sciences. IOS Press, Amsterdam, pp 191-224
39. Hoffman EA, Kolm N, Berglund A, Arguello JR, Jones AG (2005) Genetic structure in the coral-reef-associated Banggai cardinalfish, Pterapogon kauderni. Mol Ecol 14:1367-1375
40. Holmquist R (1983) Transitions and transversions in evolutionary descent: an approach to understanding. J Mol Evol 19:134-144
41. Hood PB, Johnson AK (2000) Age, growth, mortality, and reproduction of red porgy, Pagrus pagrus, from the eastern Gulf of Mexico. Fish Bull 98:723-735
42. Hudson RR (1990) Gene genealogies and the coalescent process. In: Futuyama D, Antonovics JD (eds) Oxford surveys in evolutionary biology. Oxford University Press, New York, pp 1-44
43. Jansen JHF, Kuijpers A, Troelstra SR (1986) A mid-Brunhes climatic event: long-term changes in global atmosphere and ccean circulation. Science 232:619-622
44. Jones GP, Millicich MJ, Emslie MJ, Lunow C (1999) Self-recruitment in a coral reef fish population. Nature 402:802-804
45. Joyeux J-C, Floeter SR, Ferreira CEL, Gasparini JL (2001) Biogeography of tropical reef fishes: the South Atlantic puzzle. J Biogeogr 28:831-841
46. Kaneps AG (1979) Gulf Stream: velocity fluctuations during the late Cenozoic. Science 204:297-301
47. Keigwin L (1982) Isotopic paleoceanography of the Caribbean and East Pacific: role of Panama uplift in late Neogene time. Science 217:350-353
48. Kimura M, Crow JF (1964) The number of alleles that can be maintained in a finite population. Genetics 49:725-738
49. Kruskal JB (1956) On the shortest spanning subtree of a graph and the traveling salesman problem. Proc Am Math Soc 7:48-50
50. Kumar S, Gadagkar SR (2000) Efficiency of the neighbor-joining method in reconstructing deep and shallow evolutionary relationships in large phylogenies. J Mol Evol 51:544-553
51. Labropoulou M, Machias A, Tsimenides N (1999) Habitat selection and diet of juvenile red porgy, Pagrus pagrus (Linnaeus, 1758). Fish Bull 97:495-507
52. Lee W-J, Conroy J, Howell WH, Kocher TD (1995) Structure and evolution of teleost mitochondrial control regions. J Mol Evol 41:54-66
53. Levene H (1949) On a matching problem arising in genetics. Ann Math Stat 20:91-94
54. Lloris D, Rucabado J, Figueroa H (1991) Biogeography of the Macaronesian ichthyofauna (the Azores, Madeira, the Canary Islands, Cape Verde and the African enclave). Bol Mus Mun Funchal 43:191-241
55. Maier-Reimer E, Mikolajewicz U, Crowley T (1990) Ocean general circulation model sensitivity experiment with an open Central American isthmus. Paleoceanography 5:349-366
56. Manooch CS, III, Hassler WW (1978) Synopsis of biological data on the red porgy, Pagrus pagrus (Linnaeus). NOAA technical report NMFS circular 412, US Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service
57. Manooch CS, III, Huntsman GR, Sullivan B, Elliott J (1976) Conspecific status of the sparid fishes Pagrus sedecim Ginsburg and Pagrus pagrus Linnaeus. Copeia 1976:678-684
58. Martin AP, Palumbi SR (1993) Body size, metabolic rate, generation time, and the molecular clock. Proc Natl Acad Sci USA 90:4087-4091
59. Martin AP, Humphreys R, Palumbi SR (1992) Population genetic structure of the armorhead, Pseudopentaceros wheeleri, in the North Pacific Ocean: application of the polymerase chain reaction to fisheries problems. Can J Fish Aquat Sci 49:2386-2391
60. Mills LS, Allendorf FW (1996) The one-migrant-per-generation rule in conservation and management. Conserv Biol 10:1509-1518
61. Mudelsee M, Schulz M (1997) The Mid-Pleistocene climate transition: onset of 100 ka cycle lags ice volume build-up by 280 ka. Earth Planet Sci Lett 151:117-123
62. Muss A, Robertson DR, Stepien CA, Wirtz P, Bowen BW (2001) Phylogeography of Ophioblennius: the role of ocean currents and geography in reef fish evolution. Evolution 55:561-572
63. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590
64. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
65. Orrell TM, Carpenter KE, Musick JA, Graves JE (2002) Phylogenetic and biogeographic analysis of the Sparidae (Perciformes: Percoidei) from cytochrome b sequences. Copeia 2002:618-631
66. Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358
67. Palumbi SR (1994) Genetic divergence, reproductive isolation, and marine speciation. Annu Rev Ecol Syst 25:547-572
68. Parker ROJ (1990) Tagging studies and diver observations of fish populations on live-bottom reefs of the U.S. southeastern coast. Bull Mar Sci 46:749-760
69. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818
70. Ranzi S (1969) Sparidae. In: Lo Bianco S (ed) Eggs, larvae and juvenile stages of Teleostei (Uova, larve e stadî giovanili di Teleostei). Fauna and flora of the Bay of Naples. Monograph, no. 38. Translated from Italian by L. Franchetti (translation edited by H. Mills). Jerusalem, Israel
71. Raymond M, Rousset F (1995a) An exact test for population differentiation. Evolution 49:1280-1283
72. Raymond M, Rousset F (1995b) GENEPOP (ver. 1.2): population genetics software for exact tests and ecumenicism. J Hered 86:248-249
73. Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223-225
74. Rocha LA, Bass AL, Robertson DR, Bowen BW (2002) Adult habitat preferences, larval dispersal, and the comparative phylogeography of three Atlantic surgeonfishes (Teleostei: Acanthuridae). Mol Ecol 11:243-251
75. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9:552-569
76. Rousset F, Raymond M (1995) Testing heterozygote excess and deficiency. Genetics 140:1413-1419
77. SAFMC (2003) Report of red porgy stock assessment workshop. South Atlantic Fishery Management Council, Charleston
78. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
79. Schefuss E, Damsté JSS, Jansen JHF (2004) Forcing of tropical Atlantic sea surface temperatures during the mid-Pleistocene transition. Paleoceanography 19:PA4029
80. Schneider S, Excoffier L (1999) Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152:1079-1089
81. Sedberry GR, Carlin JL, Chapman RW, Eleby B (1996) Population structure in the pan-oceanic wreckfish, Polyprion americanus (Teleostei: Polyprionidae), as indicated by mtDNA variation. J.Fish Biol 49(Suppl. A):318-329
82. Shulman MJ, Bermingham E (1995) Early life histories, ocean currents, and the population genetics of Caribbean reef fishes. Evolution 49:897-910
83. Stephanou D, Georgiou G, Shoukri E (1995) Reproduction and larval rearing of the common sea bream (Pagrus pagrus), an experimental culture. Marine aquaculture finfish species diversification. Seminar of the CIHEAM network on technology of aquaculture in the Mediterranean. Nicosia (Cyprus)
84. Summerer M, Hanel R, Sturmbauer C (2001) Mitochondrial phylogeny and biogeographic affinities of sea breams of the genus Diplodus (Sparidae). J Fish Biol 59:1638-1652
85. Swearer SE, Caselle JE, Lea DW, Warner RR (1999) Larval retention and recruitment in an island population of a coral-reef fish. Nature 402:799-802
86. Tabata K, Taniguchi N (2000) Differences between Pagrus major and Pagrus auratus through mainly mtDNA control region analysis. Fish Sci 66:9-18
87. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595
88. Takagi M, Taniguichi N, Cook D, Doyle RW (1997) Isolation and characterization of microsatellite loci from red sea bream Pagrus major and detection in closely related species. Fish Sci 63:199-204
89. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526
90. Webb T, III, Bartlein PJ (1992) Global changes during the last 3 million years: climatic controls and biotic responses. Annu Rev Ecol Syst 23:141-173
91. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370
92. Wright S (1931) Evolution in Mendelian populations. Genetics 16:97-159
93. Zatcoff MS, Ball AO, Sedberry GR (2004) Population genetic analysis of red grouper, Epinephelus morio, and scamp, Mycteroperca phenax, from the southeastern U.S. Atlantic and Gulf of Mexico. Mar Biol 144:769-777