Ligand dynamics in an electron transfer protein: Picosecond geminate recombination of carbon monoxide to heme in mutant forms of cytochrome C

Journal of Biological Chemistry

Volumn 282, Issue 3, 2007, Pages 1638-1649

  Silkstone, Gary ^a   Jasaitis, Audrius ^b,c   Wilson, Michael T ^a   Vos, Marten H ^b  

^a UNIVERSITY OF ESSEX   (United Kingdom)

^b LABORATOIRE D OPTIQUE ET BIOSCIENCES   (France)

^c INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ELECTRON TRANSFER PROTEIN; HEME RELAXATION; HYDROPHOBIC PROPERTIES; LIGAND DYNAMICS; MUTATION; PHOTOACTIVABLE ELECTRON DONOR;

ABSORPTION SPECTROSCOPY; CHEMICAL BONDS; REACTION KINETICS; REDOX REACTIONS; SPECTRUM ANALYZERS; SUBSTITUTION REACTIONS; ULTRASHORT PULSES;

LIGANDS;

ALANINE; ARGININE; ASPARAGINE; CARBON MONOXIDE; CARRIER PROTEIN; CYTOCHROME C; HEME; LIGAND; MYOGLOBIN; NITRIC OXIDE; PHENYLALANINE; SERINE; OXYGEN;

ABSORPTION SPECTROSCOPY; ARTICLE; ELECTRON TRANSPORT; GENETIC RECOMBINATION; HYDROPHOBICITY; LIGAND BINDING; MOLECULAR DYNAMICS; OXIDATION REDUCTION POTENTIAL; PHOTOSYNTHESIS; PRIORITY JOURNAL; QUANTUM YIELD; SUBSTITUTION REACTION; TRANSPORT KINETICS; CHEMICAL MODEL; CHEMISTRY; ELECTRON; KINETICS; METABOLISM; MUTATION; OXIDATION REDUCTION REACTION; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE; SITE DIRECTED MUTAGENESIS;

CARBON MONOXIDE; CYTOCHROMES C; ELECTRONS; HEME; KINETICS; LIGANDS; MODELS, CHEMICAL; MUTAGENESIS, SITE-DIRECTED; MUTATION; MYOGLOBIN; NITRIC OXIDE; OXIDATION-REDUCTION; OXYGEN; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE;

EID: 33847261166     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M605760200     Document Type: Article

References (75)

1. Page, C. C., Moser, C. C., Chen, X., and Dutton, P. L. (1999) Nature 402, 47-52
2. Boelens, R., Wever, R., and Van Gelder, B. F. (1982) Biochim. Biophys. Acta 682, 264-272
3. Pilet, E., Jasaitis, A., Liebl, U., and Vos, M. H. (2004) Proc. Natl. Acad. Sci. U. S. A. 16198-16203
4. Brzezinski, P., and Wilson, M. T. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 6176-6179
5. Larsen, R. W. (2003) Biochim. Biophys. Acta 1619, 15-22
6. Silkstone, G., Jasaitis, A., Vos, M. H., and Wilson, M. T. (2005) Dalton Trans. 21, 3489-3494
7. Karpefors, M., Wilson, M. T., and Brzezinski, P. (1998) Biochim. Biophys. Acta 1364, 385-389
8. Silkstone, G., Stanway, G., Brzezinski, P., and Wilson, M. T. (2002) Biophys. Chem. 98, 65-77
9. Bren, K. L., and Gray, H. B. (1993) J. Am. Chem. Soc. 115, 10382-10383
10. Bren, K. L., Gray, H. B., Banci, L., Bertini, I., and Turano, P. (1995) J. Am. Chem. Soc. 117, 8067-8073
11. Vos, M. H., and Martin, J.-L. (1999) Biochim. Biophys. Acta 1411, 1-20
12. Flynn, P. F., Bieber Urbauer, R. J., Zhang, H., Lee, A. L., and Wand, A. J. (2001) Biochemistry 40, 6559-6569
13. Louie, G. V., and Brayer, G. D. (1990) J. Mol. Biol. 214, 527-555
14. Muegge, I., Qi, P. X., Wand, A. J., Chu, Z. T., and Warshel, A. (1997) J. Phys. Chem. 101, 825-836
15. Simonson, T. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 6544-6549
16. Martin, J.-L., and Vos, M. H. (1994) Methods Enzymol. 232, 416-430
17. Petrich, J. W., Lambry, J.-C., Balasubramanian, S., Lambright, D. G., Boxer, S. G., and Martin, J.-L. (1994) J. Mol. Biol. 238, 437-444
18. Ikeda-Saito, M., Dou, Y., Yonetani, T., Olson, J. S., Li, T., Regan, R., and Gibson, Q. H. (1993) J. Biol. Chem. 268, 6855-6857
19. Gibson, Q. H., Regan, R., Elber, R., Olson, J. S., and Carver, T. E. (1992) J. Biol. Chem. 267, 22022-22034
20. Olson, J. S., and Phillips, G. N., Jr. (1996) J. Biol. Chem. 271, 17593-17596
21. Carlson, M. L., Regan, R., Elber, R., Li, H., Phillips, G. N., Jr., Olson, J. S., and Gibson, Q. H. (1994) Biochemistry 33, 10597-10606
22. Kim, S., and Lim, M. (2005) J. Am. Chem. Soc. 127, 8908-8909
23. Sugimoto, T., Unno, M., Shiro, Y., Dou, Y., and Ikeda-Saito, M. (1998) Biophys. J. 75, 2188-2194
24. Nienhaus, K., Deng, P., Olson, J. S., Warren, J. J., and Nienhaus, G. U. (2003) J. Biol. Chem. 278, 42532-42544
25. Cao, W., Ye, X., Georgiev, G. Y., Berezhna, S., Sjodin, T., Demidov, A. A., Wang, W., Sage, J. T., and Champion, P. M. (2004) Biochemistry 43, 7017-7027
26. Provencher, S. W., and Vogel, R. H. (1983) in Numerical Treatment of Inverse Problems in Differential and Integral Equations (Deuflhard, P., and Hairer, E., eds) Vol. 2, pp. 304-319, Birkhauser, Boston
27. Morgan, J. E., Verkhovsky, M. I., Puustinen, A., and Wikström, M. (1995) Biochemistry 34, 15633-15637
28. Brunori, M., Giacometti, G. M., Antonini, E., and Wyman, J. (1973) Proc. Natl. Acad. Sci. U. S. A. 70, 3141-3144
29. Weiss, R. F. (1970) Deep-Sea Res. Ocean. Abstr. 17, 721-735
30. Antonini, E. (1965) Physiol. Rev. 45, 123-170
31. Silkstone, G. (2000) Biophysical Studies on Methionine-80 Mutants of Yeast Iso-1 Cytochrome C, Ph.D. thesis, University of Essex, Colchester, United Kingdom
32. Wood, P. M. (1984) Biochim. Biophys. Acta 768, 293-317
33. Petrich, J. W., Poyart, C., and Martin, J.-L. (1988) Biochemistry 27, 4049-4060
34. Cianetti, S., Kruglik, S. G., Vos, M. H., Turpin, P.-Y., Martin, J.-L., and Négrerie, M. (2004) Biochim. Biophys. Acta 1658, 218
35. Walda, K. N., Liu, X. Y., Sharma, V. S., and Magde, D. (1994) Biochemistry 33, 2198-2209
36. Liebl, U., Bouzhir-Sima, L., Négrerie, M., Martin, J.-L., and Vos, M. H. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 12771-12776
37. Ye, X., Demidov, A., and Champion, P. M. (2002) J. Am. Chem. Soc. 124, 5914-5924
38. Silkstone, G., Stanway, G., and Wilson, M. T. (1998) Biochem. Soc. Trans. 26, S348
39. Silkstone, G. G., Cooper, C. E., Svistunenko, D., and Wilson, M. T. (2005) J. Am. Chem. Soc. 127, 92-99
40. Hargrove, M. S. (2000) Biophys. J. 79, 2733-2738
41. Liebl, U., Bouzhir-Sima, L., Kiger, L., Marden, M. C., Lambry, J.-C., Négrerie, M., and Vos, M. H. (2003) Biochemistry 42, 6527- 6535
42. Puranik, M., Nielsen, S. B., Youn, H., Hvitved, A. N., Bourassa, J. L., Case, M. A., Tengroth, C., Balakrishnan, G., Thorsteinsson, M. V., Groves, J. T., McLendon, G. L., Roberts, G. P., Olson, J. S., and Spiro, T. G. (2004) J. Biol. Chem. 279, 21096-21108
43. Lu, Y., Casimiro, D. R., Bren, K. L., Richards, J. H., and Gray, H. B. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 11456-11459
44. Franzen, S. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 16754-16759
45. Kim, S., Jin, G., and Lim, M. (2004) J. Phys. Chem. B 108, 20366-20375
46. Négrerie, M., Berka, V., Vos, M. H., Liebl, U., Lambry, J.-C., Tsai, A.-L., and Martin, J.-L. (1999) J. Biol. Chem. 274, 24694-24702
47. Négrerie, M., Bouzhir-Sima, L., Martin, J.-L., and Liebl, U. (2001) J. Biol. Chem. 276, 46815-46821
48. Ionascu, D., Gruia, F., Ye, X., Yu, A., Rosca, F., Beck, C., Demidov, A., Olson, J. S., and Champion, P. M. (2005) J. Am. Chem. Soc. 127, 16921-16934
49. Lim, M., Jackson, T. A., and Anfinrud, P. A. (1995) Science 269, 962-966
50. Lim, M., Jackson, T. A., and Anfinrud, P. A. (1997) Nat. Struct. Biol. 4, 209-214
51. Srajer, V., Ren, Z., Teng, T. Y., Schmidt, M., Ursby, T., Bourgeois, D., Pradervand, C., Schildkamp, W., Wulff, M., and Moffat, K. (2001) Biochemistry 40, 13802-13815
52. Schotte, F., Lim, M. H., Jackson, T. A., Smirnov, A. V., Soman, J., Olson, J. S., Phillips, G. N., Wulff, M., and Anfinrud, P. A. (2003) Science 300, 1944-1947
53. Kim, S., and Lim, M. (2005) J. Am. Chem. Soc. 127, 5786-5787
54. Vitkup, D., Petsko, G. A., and Karplus, M. (1997) Nat. Struct. Biol. 4, 202-208
55. Kumazaki, S., Nakajima, H., Sakaguchi, T., Nakagawa, E., Shinahara, H., Yoshihara, K., and Aano, S. (2000) J. Biol. Chem. 275, 38378-38383
56. Rubtsov, I. V., Zhang, T., Nakajima, H., Aano, S., Rubtsov, G. I., Kumazaki, S., and Yoshihara, K. (2001) J. Am. Chem. Soc. 123, 10056-10062
57. Guex, N., and Peitsch, M. C. (1997) Electrophoresis 18, 2714-2723
58. Lim, M., Jackson, T. A., and Anfinrud, P. A. (1997) J. Biol. Inorg. Chem. 2, 531-536
59. Tucker, P. W., Phillips, S. E. V., Perutz, M. F., Houtchens, R., and Caughey, W. S. (1978) Proc. Natl. Acad. Sci. U. S. A. 75, 1076-1080
60. Yao, Y., Qian, C., Ye, K., Wang, J., Bai, Z., and Tang, W. (2002) J. Biol. Inorg. Chem. 7, 539-547
61. Banci, L., Bertini, I., Bren, K. L., and Gray, H. B. (1995) Biochemistry 34, 11385-11398
62. Lo, T. P., Komar-Panicucci, S., Sherman, F., McLendon, G., and Brayer, G. D. (1995) Biochemistry 34, 5259-5268
63. Rosell, F. I., Harris, T. R., Hildebrand, D. P., Dopner, S., Hildebrandt, P., and Mauk, A. G. (2000) Biochemistry 39, 9047-9054
64. Pearce, L. L., Gartner, A. L., Smith, M., and Mauk, A. G. (1989) Biochemistry 28, 3152-3156
65. Antonini, E., and Brunori, M. (1971) Hemoglobin and Myoglobin in Their Reactions with Ligands, Elsevier/North-Holland Biomedical Press, Amsterdam
66. Arcovito, A., Gianni, S., Brunori, M., Travaglini-Allocatelli, C., and Bellelli, A. (2001) J. Biol. Chem. 276, 41073-41078
67. Cohen, J., Arkhipov, A., Braun, R., and Schulten, K. (2006) Biophys. J. 91, 1844-1857
68. Srajer, V., Teng, T. Y., Ursby, T., Pradervand, C., Ren, Z., Adachi, S., Schildkamp, W., Bourgeois, D., Wulff, M., and Moffat, K. (1996) Science 274, 1726-1729
69. Chu, K., Vojtchovsky, J., McMahon, B. H., Sweet, R. M., Berendzen, J., and Schlichting, I. (2000) Nature 403, 921-923
70. Ostermann, A., Waschipky, R., Parak, F. G., and Nienhaus, G. U. (2000) Nature 404, 205-208
71. Brunori, M. (2000) Biophys. Chem. 86, 221-230
72. Tian, W. D., Sage, J. T., and Champion, P. M. (1993) J. Mol. Biol. 233, 155-166
73. Brunori, M., and Gibson, Q. H. (2001) EMBO Rep. 2, 674-679
74. Scott, E. E., Gibson, Q. H., and Olson, J. S. (2001) J. Biol. Chem. 276, 5177-5188
75. Schmidt, M., Nienhaus, K., Pahl, R., Krasselt, A., Anderson, S., Parak, F., Nienhaus, G. U., and Srajer, V. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 11704-11709