-
1
-
-
15244355769
-
Nitrification in freshwater sediments as influenced by insect larvae: Quantification by microsensors and fluorescence in situ hybridization
-
Altmann, D., P. Stief, R. Amann, and D. de Beer. 2004. Nitrification in freshwater sediments as influenced by insect larvae: quantification by microsensors and fluorescence in situ hybridization. Microb. Ecol. 48:145-153.
-
(2004)
Microb. Ecol
, vol.48
, pp. 145-153
-
-
Altmann, D.1
Stief, P.2
Amann, R.3
de Beer, D.4
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
33847188257
-
-
Andrussow, L. 1969. Diffusion, p. 513-727. In H. Borchers, H. Hauser, K. H. Hellwege, K. Schafer, and E. Schmidt (ed.), Landolt-Bornstein Zahlenwerte und Functionen, 6th ed., II/5a. Springer, Berlin, Germany.
-
Andrussow, L. 1969. Diffusion, p. 513-727. In H. Borchers, H. Hauser, K. H. Hellwege, K. Schafer, and E. Schmidt (ed.), Landolt-Bornstein Zahlenwerte und Functionen, 6th ed., vol. II/5a. Springer, Berlin, Germany.
-
-
-
-
4
-
-
23944433934
-
Loss of diversity of ammonia-oxidizing bacteria correlates with increasing salinity in an estuary system
-
Bernhard, A. E., T. Donn, A. E. Giblin, and D. A. Stahl. 2005. Loss of diversity of ammonia-oxidizing bacteria correlates with increasing salinity in an estuary system. Environ. Microbiol. 7:1289-1297.
-
(2005)
Environ. Microbiol
, vol.7
, pp. 1289-1297
-
-
Bernhard, A.E.1
Donn, T.2
Giblin, A.E.3
Stahl, D.A.4
-
6
-
-
0003425384
-
-
Clesceri, L, A. Greenberg, and A. Eaton ed, American Public Health Association, Washington, D.C
-
Clesceri, L., A. Greenberg, and A. Eaton (ed.). 1998. Standard methods for the examination of water and wastewater. American Public Health Association, Washington, D.C.
-
(1998)
Standard methods for the examination of water and wastewater
-
-
-
7
-
-
22044444428
-
Effect of salinity on temporal and spatial dynamics of ammonia-oxidising bacteria from intertidal freshwater sediment
-
Coci, M., D. Riechmann, P. L. E. Bodelier, S. Stefani, G. Zwart, and H. J. Laanbroek. 2005. Effect of salinity on temporal and spatial dynamics of ammonia-oxidising bacteria from intertidal freshwater sediment. FEMS Microbiol. Ecol. 53:359-368.
-
(2005)
FEMS Microbiol. Ecol
, vol.53
, pp. 359-368
-
-
Coci, M.1
Riechmann, D.2
Bodelier, P.L.E.3
Stefani, S.4
Zwart, G.5
Laanbroek, H.J.6
-
8
-
-
32544442529
-
Analysis of community composition of biofilms in a submerged filter system for the removal of ammonia and phenol from industrial wastewater
-
Cortés-Lorenzo, C., M. L. Molina-Muñoz, B. Gómez-Villalba, R. Vilchez, A. Ramos, B. Rodelas, E. Hontoria, and J. González-López. 2006. Analysis of community composition of biofilms in a submerged filter system for the removal of ammonia and phenol from industrial wastewater. Biochem. Soc. Trans. 34:165-168.
-
(2006)
Biochem. Soc. Trans
, vol.34
, pp. 165-168
-
-
Cortés-Lorenzo, C.1
Molina-Muñoz, M.L.2
Gómez-Villalba, B.3
Vilchez, R.4
Ramos, A.5
Rodelas, B.6
Hontoria, E.7
González-López, J.8
-
9
-
-
0031030476
-
A nitrite microsensor for profiling environmental biofilms
-
de Beer, D., A. Schramm, C. M. Santegoeds, and M. Kühl. 1997. A nitrite microsensor for profiling environmental biofilms. Appl. Environ. Microbiol. 63:973-977.
-
(1997)
Appl. Environ. Microbiol
, vol.63
, pp. 973-977
-
-
de Beer, D.1
Schramm, A.2
Santegoeds, C.M.3
Kühl, M.4
-
10
-
-
0029018038
-
Detection and counting of Nitrobacter populations in soil by PCR
-
Degrange, V., and R. Bardin. 1995. Detection and counting of Nitrobacter populations in soil by PCR. Appl. Environ. Microbiol. 61:2093-2098.
-
(1995)
Appl. Environ. Microbiol
, vol.61
, pp. 2093-2098
-
-
Degrange, V.1
Bardin, R.2
-
11
-
-
12244310172
-
Quantification of ammonia-oxidizing bacteria and factors controlling nitrification in salt marsh sediments
-
Dollhopf, S. L., J. H. Hyun, A. C. Smith, H. J. Adams, S. O'Brien, and J. E. Kostka. 2005. Quantification of ammonia-oxidizing bacteria and factors controlling nitrification in salt marsh sediments. Appl. Environ. Microbiol. 71: 240-246.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 240-246
-
-
Dollhopf, S.L.1
Hyun, J.H.2
Smith, A.C.3
Adams, H.J.4
O'Brien, S.5
Kostka, J.E.6
-
12
-
-
33644841315
-
Changes in the community structure and activity of betaproteobacterial ammonia-oxidizing sediment bacteria along a freshwater-marine gradient
-
Freitag, T. E., L. Chang, and J. I. Prosser. 2006. Changes in the community structure and activity of betaproteobacterial ammonia-oxidizing sediment bacteria along a freshwater-marine gradient. Environ. Microbiol. 8:684-696.
-
(2006)
Environ. Microbiol
, vol.8
, pp. 684-696
-
-
Freitag, T.E.1
Chang, L.2
Prosser, J.I.3
-
14
-
-
0035144174
-
Quantification of ammonia-oxidizing bacteria in arable soil by real-time PCR
-
Hermansson, A., and P. E. Lindgren. 2001. Quantification of ammonia-oxidizing bacteria in arable soil by real-time PCR. Appl. Environ. Microbiol. 67:972-976.
-
(2001)
Appl. Environ. Microbiol
, vol.67
, pp. 972-976
-
-
Hermansson, A.1
Lindgren, P.E.2
-
15
-
-
0031975148
-
Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria
-
Hovanec, T. A., L. T. Taylor, A. Blakis, and E. F. Delong. 1998. Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria. Appl. Environ. Microbiol. 64:258-264.
-
(1998)
Appl. Environ. Microbiol
, vol.64
, pp. 258-264
-
-
Hovanec, T.A.1
Taylor, L.T.2
Blakis, A.3
Delong, E.F.4
-
16
-
-
0000577568
-
Determination of the effective diffusion coefficient of oxygen in gel materials in relation to gel concentration
-
Hulst, A. C., H. J. H. Hens, R. M. Buitelaar, and J. Tramper. 1989. Determination of the effective diffusion coefficient of oxygen in gel materials in relation to gel concentration. Biotechnol. Tech. 3:199-204.
-
(1989)
Biotechnol. Tech
, vol.3
, pp. 199-204
-
-
Hulst, A.C.1
Hens, H.J.H.2
Buitelaar, R.M.3
Tramper, J.4
-
17
-
-
0000704530
-
Oxygen and inorganic nitrogen contents and fluxes in burrows of the shrimps Callianassa japonica and Upogebia major
-
Koike, I., and H. Mukai. 1983. Oxygen and inorganic nitrogen contents and fluxes in burrows of the shrimps Callianassa japonica and Upogebia major. Mar. Ecol. Prog. Ser. 12:185-190.
-
(1983)
Mar. Ecol. Prog. Ser
, vol.12
, pp. 185-190
-
-
Koike, I.1
Mukai, H.2
-
18
-
-
0030901922
-
Analysis of ammonia-oxidizing bacteria of the β subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
-
Kowalchuk, G. A., J. R. Stephen, W. De Boer, J. I. Prosser, T. M. Embley, and J. W. Woldendorp. 1997. Analysis of ammonia-oxidizing bacteria of the β subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl. Environ. Microbiol. 63:1489-1497.
-
(1997)
Appl. Environ. Microbiol
, vol.63
, pp. 1489-1497
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
De Boer, W.3
Prosser, J.I.4
Embley, T.M.5
Woldendorp, J.W.6
-
19
-
-
0001428252
-
Ventilation and oxygen uptake by three species of Nereis (Annelida: Polychaeta). I. Effects of hypoxia
-
Kristensen, E. 1983. Ventilation and oxygen uptake by three species of Nereis (Annelida: Polychaeta). I. Effects of hypoxia. Mar. Ecol. Prog. Ser. 12:289-297.
-
(1983)
Mar. Ecol. Prog. Ser
, vol.12
, pp. 289-297
-
-
Kristensen, E.1
-
20
-
-
0036053784
-
Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila
-
López-García, P., F. Gaill, and D. Moreira. 2002. Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila. Environ. Microbiol. 4:204-215.
-
(2002)
Environ. Microbiol
, vol.4
, pp. 204-215
-
-
López-García, P.1
Gaill, F.2
Moreira, D.3
-
21
-
-
0030819820
-
The RDP (Ribosomal Database Project)
-
Maidak, B. L., G. L. Olsen, N. Larsen, R. Overbeek, M. J. McCaughey, and C. R. Woese. 1997. The RDP (Ribosomal Database Project). Nucleic Acids Res. 25:109-110.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 109-110
-
-
Maidak, B.L.1
Olsen, G.L.2
Larsen, N.3
Overbeek, R.4
McCaughey, M.J.5
Woese, C.R.6
-
22
-
-
10644251941
-
Sulfate-reducing bacteria in tubes constructed by the marine infaunal polychaete Diopatra cuprea
-
Matsui, G. Y., D. B. Ringelberg, and C. R. Lovell. 2004. Sulfate-reducing bacteria in tubes constructed by the marine infaunal polychaete Diopatra cuprea. Appl. Environ. Microbiol. 70:7053-7065.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 7053-7065
-
-
Matsui, G.Y.1
Ringelberg, D.B.2
Lovell, C.R.3
-
24
-
-
0000187114
-
Microdistribution of interstitial meiofauna, oxygen and sulfide gradients, and the tubes of macroinfauna
-
Meyers, M. B., H. Fossing, and E. N. Powell. 1987. Microdistribution of interstitial meiofauna, oxygen and sulfide gradients, and the tubes of macroinfauna. Mar. Ecol. Prog. Ser. 35:223-241.
-
(1987)
Mar. Ecol. Prog. Ser
, vol.35
, pp. 223-241
-
-
Meyers, M.B.1
Fossing, H.2
Powell, E.N.3
-
25
-
-
0001282516
-
Movement of oxybiotic and thiobiotic meiofauna in response to changes in pore-water oxygen and sulfide gradients around macro-infaunal tubes
-
Meyers, M. B., E. N. Powell, and H. Fossing. 1988. Movement of oxybiotic and thiobiotic meiofauna in response to changes in pore-water oxygen and sulfide gradients around macro-infaunal tubes. Mar. Biol. 98:395-414.
-
(1988)
Mar. Biol
, vol.98
, pp. 395-414
-
-
Meyers, M.B.1
Powell, E.N.2
Fossing, H.3
-
26
-
-
33644870961
-
Community structure, abundance, and in situ activity of nitrifying bacteria in river sediments as determined by the combined use of molecular techniques and microelectrodes
-
Nakamura, Y., H. Satoh, T. Kindaichi, and S. Okabe. Community structure, abundance, and in situ activity of nitrifying bacteria in river sediments as determined by the combined use of molecular techniques and microelectrodes. Environ. Sci. Tech. 40:1532-1539.
-
Environ. Sci. Tech
, vol.40
, pp. 1532-1539
-
-
Nakamura, Y.1
Satoh, H.2
Kindaichi, T.3
Okabe, S.4
-
27
-
-
2442501270
-
Photosynthesis in sediments determined at high spatial resolution by the use of microelectrodes
-
Nakamura, Y., H. Satoh, S. Okabe, and Y. Watanabe. 2004. Photosynthesis in sediments determined at high spatial resolution by the use of microelectrodes. Wat. Res. 38:2440-2448.
-
(2004)
Wat. Res
, vol.38
, pp. 2440-2448
-
-
Nakamura, Y.1
Satoh, H.2
Okabe, S.3
Watanabe, Y.4
-
28
-
-
0032976059
-
In situ analysis of nitrifying biofilms as determined by in situ hybridization and the use of microelectrodes
-
Okabe, S., H. Satoh, and Y. Watanabe. 1999. In situ analysis of nitrifying biofilms as determined by in situ hybridization and the use of microelectrodes. Appl. Environ. Microbiol. 65:3182-3191.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 3182-3191
-
-
Okabe, S.1
Satoh, H.2
Watanabe, Y.3
-
29
-
-
0141502465
-
16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: Extension of the dataset and proposal of a new lineage within the nitrosomonads
-
Purkhold, U., M. Wagner, G. Timmermann, A. Pommerening-Roser, and H.-P. Koops. 2003. 16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads. Int. J. Syst. Evol. Microbiol. 53:1485-1494.
-
(2003)
Int. J. Syst. Evol. Microbiol
, vol.53
, pp. 1485-1494
-
-
Purkhold, U.1
Wagner, M.2
Timmermann, G.3
Pommerening-Roser, A.4
Koops, H.-P.5
-
30
-
-
84986767568
-
An oxygen microelectrode with a guard cathode
-
Revsbech, N. P. 1989. An oxygen microelectrode with a guard cathode. Limnol. Oceanogr. 34:474-478.
-
(1989)
Limnol. Oceanogr
, vol.34
, pp. 474-478
-
-
Revsbech, N.P.1
-
31
-
-
0029667227
-
Microbial biomass and community structures in the burrows of bromophenol producing and non-producing marine worms and surrounding sediments
-
Steward, C. C., S. C. Nold, D. B. Ringelberg, D. C. White, and C. R. Lovell. 1996. Microbial biomass and community structures in the burrows of bromophenol producing and non-producing marine worms and surrounding sediments. Mar. Ecol. Prog. Ser. 133:149-165.
-
(1996)
Mar. Ecol. Prog. Ser
, vol.133
, pp. 149-165
-
-
Steward, C.C.1
Nold, S.C.2
Ringelberg, D.B.3
White, D.C.4
Lovell, C.R.5
-
32
-
-
4444306459
-
Microbial activities in the burrow environment of the potamal mayfly Ephoron virgo
-
Stief, P., D. Altmann, D. de Beer, R. Bieg, and A. Kureck. 2004. Microbial activities in the burrow environment of the potamal mayfly Ephoron virgo. Freshw. Biol. 49:1152-1163.
-
(2004)
Freshw. Biol
, vol.49
, pp. 1152-1163
-
-
Stief, P.1
Altmann, D.2
de Beer, D.3
Bieg, R.4
Kureck, A.5
-
33
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
34
-
-
0035086691
-
Oxygen measurements in the burrows of freshwater insects
-
Wang, F., A. Tessier, and L. Hare. 2001. Oxygen measurements in the burrows of freshwater insects. Freshw. Biol. 46:317-327.
-
(2001)
Freshw. Biol
, vol.46
, pp. 317-327
-
-
Wang, F.1
Tessier, A.2
Hare, L.3
|