Binding of intercalating and groove-binding cyanine dyes to bacteriophage T5

Journal of Physical Chemistry B

Volumn 111, Issue 5, 2007, Pages 1139-1148

  Eriksson, Maja ^a   Härdelin, Maria ^a   Larsson, Anette ^a   Bergenholtz, Johan ^b   Åkerman, Björn ^a  

^a CHALMERS UNIVERSITY OF TECHNOLOGY   (Sweden)

^b UNIVERSITY OF GOTHENBURG   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION SPECTROSCOPY; BACTERIOPHAGES; DNA; ELECTROSTATICS; FLUORESCENCE; IONIC STRENGTH; LIGHT SCATTERING; PORE SIZE;

BINDING AGENTS; CAPSIDS; ELECTROSTATIC INTERACTIONS;

DYES;

EID: 33847079663     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp064322m     Document Type: Article

References (33)

1. Fokine, A.; Kostyuchenko, V. A.; Efimov, A. V.; Kurochkina, L. P.; Sykilinda, N. N.; Robben, J.; Volckaert, G.; Hoenger, A.; Chipman, P. R.; Battisti, A. J.; Rossmann, M. G.; Mesyanzhinov, V. J. Mol. Biol. 2005, 352, 117.
2. Fokine, A.; Leiman, P. G.; Shneider, M. M.; Ahvazi, B.; Boeshans, K.; Steven, A. C.; Black, L. W.; Mesyanzhinov, V. V.; Rossmann, M. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 7163.
3. Fokine, A.; Chipman, P. R.; Leiman, P. G.; Mesyanzhinov, V. V.; Rao, V. B.; Rossmann, M. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 6003.
4. Böhm, J.; Lambert, O.; Frangakis, A. S.; Letellier, L.; Baumeister, W.; Rigaud, J. L. Curr. Biol. 2001, 11, 1168.
5. Smith, D. E.; Tans, S. J.; Smith, S., B.; Grimes, S.; Anderson, D., L.; Bustamante, C. Nature 2001, 413, 748.
6. Chemla, Y. R.; Aathavan, K.; Michaelis, J.; Grimes, S.; Jardine, P. J.; Anderson, D. L.; Bustamante, C. Cell 2005, 122, 683.
7. Mitchell, M. S.; Rao, V. B. J. Biol. Chem. 2006, 281, 518.
8. Novick, S. L.; Baldeschwieler, J. D. Biochemistry 1988, 27, 7919.
9. Boulanger, P.; Le Maire, M.; Bonhivers, M.; Dubois, S.; Desmadril, M.; Letellier, L. Biochemistry 1996, 35, 14216.
10. De Frutos, M.; Letellier, L.; Raspaud, E. Biophys. J. 2005, 88, 1364.
11. Mangenot, S.; Hochrein, M.; Radier, J.; Letellier, L. Curr. Biol. 2005, 15, 430.
12. Evilevitch, A.; Lavelle, L.; Knobler, C. M.; Raspaud, E.; Gelbart, W. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 9292.
13. Griess, G. A.; Serwer, P.; Kaushal, V.; Horowitz, P. M. Biopolymers 1986, 25, 1345.
14. McCall, P. J.; Bloomfield, V. A. Biopolymers 1976, 15, 2323.
15. McCall, P. J.; Bloomfield, V. A. Biopolymers 1976, 15, 97.
16. Griess, G. A.; Serwer, P.; Horowitz, P. M. Biopolymers 1985, 24, 1635.
17. Carlsson, C.; Larsson, A.; Jonsson, M.; Albinsson, B.; Norden, B. J. Phys. Chem. 1994, 98, 10313.
18. Matsuzawa, Y.; Yoshikawa, K. Nucleosides Nucleotides 1994, 13, 1415.
19. Larsson, A.; Carlsson, C.; Jonsson, M.; Albinsson, B. J. Am. Chem. Soc. 1994, 116, 8459.
20. Lerman, L. S. J. Mol. Biol. 1961, 3, 18.
21. Eriksson, M.; Westerlund, F.; Mehmedovic, M.; Lincoln, P.; Westman, G.; Larsson, A.; Åkerman, B. Biophys. Chem. 2006, 122, 195
22. Eriksson, M.; Mehmedovic, M.; Westman, G.; Åkerman, B. Electrophoresis 2005, 26, 524.
23. Wang, J. B.; Jiang, Y.; Vincent, M.; Sun, Y. Q.; Yu, H.; Wang, J.; Bao, Q. Y.; Kong, H. M.; Hu, S. N. Virology 2005, 332, 45.
24. (24) Bonhivers, M.; Ghazi, A.; Boulanger, P.; Letellier, L. EMBO J. 1996, 15, 1850.
25. Bellare, R.; Davis, T.; Scriven, E.; Talmon. J. Electron Microsc. Tech. 1988, 10, 87.
26. Koppel, D. E. J. Chem. Phys. 1972, 57, 4814.
27. Nordén, B.; Kubista, M.; Kurucsev, T. Q. Rev. Biophys. 1992, 25, 51.
28. Serwer, P.; Watson, R. H.; Hayes, S. J.; Allen, J. L. J. Mol. Biol. 1983, 170, 447.
29. Dubochet, J.; Adrian, M.; Dustin, I.; Furrer, P.; Stasiak, A. Methods Enzymol. 1992, 211, 507.
30. Tabor, C.; White, H. Microbiol. Rev. 1985, 49, 81.
31. Karlsson, H. J.; Bergqvist, M.; Lincoln, P.; Westman, G. Bioorg. Med. Chem. 2004, 12, 2369.
32. Tomac, S.; Sarkar, M.; Ratilainen, T.; Wittung, P.; Nielsen, P. E.; Norden, B.; Gräslund, A. J. Am. Chem. Soc. 1996, 118, 5544.
33. Sharp, P. A.; Bloomfield, V. A. Biochem. Biophys. Res. Commun. 1970, 39, 407.