Robust autofocusing for automated microscopy imaging of fluorescently labelled bacteria

Proceedings of the Digital Imaging Computing: Techniques and Applications, DICTA 2005

Volumn 2005, Issue , 2005, Pages 95-101

  Hilsenstein, Volker ^a  

^a CSIRO   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; FLUORESCENCE; IMAGING SYSTEMS; PARAMETER ESTIMATION; REGRESSION ANALYSIS;

AUTOFOCUSING; AUTOMATED MICROSCOPY; CORRELATION BASED FOCUS MEASURES; FLUORESCENTLY LABELED BACTERIA; MORPHOLOGICAL AREA OPENING;

BACTERIA;

EID: 33847003669     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/DICTA.2005.1578113     Document Type: Conference Paper

References (15)

1. W. Böcker, W. Rolf, W.-U. Müller, and C. Steffer. A fast autofocus unit, for fluorescence microscopy. Physics in Medicine and Biology, 42:1981-1992, 1997.
2. F. R. Boddeke, L. J. van Vliet, H. Netten, and I. T. Young. Autofocusing in microscopy based on the OTF and sampling. Bioimaging, 2(4): 193-203, 1994.
3. M. Bravo-Zanoguera, B. v. Massenbach, A. L. Kellner, and J. H. Price. High-performance autofocus circuit for biological microscopy. Review of Scientific Instruments, 69(11):3966-3977. November 1998.
4. J. M. Geusebroek, F. Cornelissen, A. W. M. Smeulders, and H. Geerts. Robust autofocusing in microscopy. Cytometry, 39(1):1-9, 2000.
5. F. C. A. Groen, I. T. Young, and G. Lighthart. A comparison of different focus functions for use in autofocus algorithms. Cytometry, 6:81-91, 1985.
6. G. Ligthart and F. C. A. Groen. A comparison of different autofocus algorithms for fluorescence microscopy. In Proceedings of the Sixth International Conference on Pattern Recognition, pages 597-600, 1982.
7. A. Santos, C. O. Solórzano, J. J. Vaquero, J. M. Peña, M. Malpica, and F. Pozo. Evaluation of autofocus functions in molecular cytogenetic analysis. Journal of Microscopy, 188(3):264-272, December 1997.
8. P. Soille. Morphological Image Analysis. Springer-Verlag. Heidelberg, 2nd edition, 2003.
9. Y. Sun, S. Duthaler, and B. J. Nelson. Autofocusing in computer microscopy: Selecting the optimal focus algorithm. Microscopy Research and Technique. 65:139-149, 2004.
10. A. Valdecasas, D. Marshall, J. Becerra, and J. Terrero. On the extended depth of focus algorithm for bright, field microscopy. Micron, 32(6):559-569, August 2001.
11. W. Venables and B. Ripley. Modern Applied Statistics with S. Springer, 4th edition, 2002.
12. L. Vincent. Morphological area openings and closings for grey scale images. In Proc. Shape in Picture '92, NATO Workshop, Driebergen, The Netherlands, Sept. 1992. Springer-Verlag.
13. D. Vollath. Automatic focusing by correlative methods. Journal of Microscopy. 147:279-288, 1987.
14. D. Vollath. The influence of the scene parameters and of noise on the behaviour of automatic focusing algorithms. Journal of Microscopy, 151:133-146, 1988.
15. V. Yohai, W. Stahel, and R. Zamar. A procedure for robust estimation and inference in linear regression. In W. Stahel and S. Weisberg, editors. Directions in Robust Statistics and Diagnostics, Part II. Springer, New York, 1991.