-
1
-
-
84940913922
-
Biosynthesis and Biological Function of Bilins
-
Guilard, R, Ed, pp, Academic Press, New York
-
Frankenberg, N. F., and Lagarias, J. C. (2003) Biosynthesis and Biological Function of Bilins, in The Porphyrin Handbook. Chlorophylls and Bilins: Biosynthesis Structure and Degradation (Guilard, R., Ed.) pp 211-235, Academic Press, New York.
-
(2003)
The Porphyrin Handbook. Chlorophylls and Bilins: Biosynthesis Structure and Degradation
, pp. 211-235
-
-
Frankenberg, N.F.1
Lagarias, J.C.2
-
2
-
-
33745938554
-
Phytochrome structure and signaling mechanisms
-
Rockwell, N. C., Su, Y. S., and Lagarias, J. C. (2006) Phytochrome structure and signaling mechanisms, Annu. Rev. Plant Biol. 57, 837-858.
-
(2006)
Annu. Rev. Plant Biol
, vol.57
, pp. 837-858
-
-
Rockwell, N.C.1
Su, Y.S.2
Lagarias, J.C.3
-
3
-
-
0002315974
-
Phycobiliproteins
-
Cohen, Z, Ed, pp, Taylor and Francis, London, England
-
Glazer, A. N. (1999) Phycobiliproteins, in Chemicals from Microalgae (Cohen, Z., Ed.) pp 261-280, Taylor and Francis, London, England.
-
(1999)
Chemicals from Microalgae
, pp. 261-280
-
-
Glazer, A.N.1
-
4
-
-
84940915988
-
Heme Oxygenase Structure and Mechanism
-
Guilard, R, Ed, pp, Academic Press, New York
-
Ortiz de Montellano, P. R., and Auclair, K. (2003) Heme Oxygenase Structure and Mechanism, in The Porphyrin Handbook. The Iron and Cobalt Pigments: Biosynthesis, Structure and Degradation. (Guilard, R., Ed.) pp 183-210, Academic Press, New York.
-
(2003)
The Porphyrin Handbook. The Iron and Cobalt Pigments: Biosynthesis, Structure and Degradation
, pp. 183-210
-
-
Ortiz de Montellano, P.R.1
Auclair, K.2
-
5
-
-
0035032642
-
Functional genomic analysis of the HY2 family of ferredoxin-dependent bilin reductases from oxygenic photosynthetic organisms
-
Frankenberg, N., Mukougawa, K., Kohchi, T., and Lagarias, J. C. (2001) Functional genomic analysis of the HY2 family of ferredoxin-dependent bilin reductases from oxygenic photosynthetic organisms, Plant Cell 13, 965-978.
-
(2001)
Plant Cell
, vol.13
, pp. 965-978
-
-
Frankenberg, N.1
Mukougawa, K.2
Kohchi, T.3
Lagarias, J.C.4
-
6
-
-
0037999874
-
Phycocyanobilin: Ferredoxin oxidoreductase of Anabaena sp. PCC 7120. Biochemical and spectroscopic characterization
-
Frankenberg, N., and Lagarias, J. C. (2003) Phycocyanobilin: ferredoxin oxidoreductase of Anabaena sp. PCC 7120. Biochemical and spectroscopic characterization, J. Biol. Chem. 278, 9219-9226.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 9219-9226
-
-
Frankenberg, N.1
Lagarias, J.C.2
-
7
-
-
3242698569
-
Biliverdin reduction by cyanobacterial phycocyanobilin: Ferredoxin oxidoreductase (PcyA) proceeds via linear tetrapyrrole radical intermediates
-
Tu, S., Gunn, A., Toney, M. D., Britt, R. D., and Lagarias, J. C. (2004) Biliverdin reduction by cyanobacterial phycocyanobilin: ferredoxin oxidoreductase (PcyA) proceeds via linear tetrapyrrole radical intermediates, J. Am. Chem. Soc. 126, 8682-8693.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 8682-8693
-
-
Tu, S.1
Gunn, A.2
Toney, M.D.3
Britt, R.D.4
Lagarias, J.C.5
-
8
-
-
33645639016
-
A Conserved histidine-aspartate pair is required for exovinyl reduction of biliverdin by a cyanobacterial phycocyanobilin:ferredoxin oxidoreductase
-
Tu, S., Sughrue, W., Britt, R. D., and Lagarias, J. C. (2006) A Conserved histidine-aspartate pair is required for exovinyl reduction of biliverdin by a cyanobacterial phycocyanobilin:ferredoxin oxidoreductase, J. Biol. Chem. 281, 3127-3136.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 3127-3136
-
-
Tu, S.1
Sughrue, W.2
Britt, R.D.3
Lagarias, J.C.4
-
9
-
-
30444438168
-
Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IXα, a key enzyme in the biosynthesis of phycocyanobilin
-
Hagiwara, Y., Sugishima, M., Takahashi, Y., and Fukuyama, K. (2006) Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IXα, a key enzyme in the biosynthesis of phycocyanobilin, Proc. Natl. Acad. Sci. U.S.A. 103, 27-32.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 27-32
-
-
Hagiwara, Y.1
Sugishima, M.2
Takahashi, Y.3
Fukuyama, K.4
-
10
-
-
33745437116
-
Induced-fitting and electrostatic potential change of PcyA upon substrate binding demonstrated by the crystal structure of the substrate-free form
-
Hagiwara, Y., Sugishima, M., Takahashi, Y., and Fukuyama, K. (2006) Induced-fitting and electrostatic potential change of PcyA upon substrate binding demonstrated by the crystal structure of the substrate-free form, FEBS Lett. 580, 3823-3828.
-
(2006)
FEBS Lett
, vol.580
, pp. 3823-3828
-
-
Hagiwara, Y.1
Sugishima, M.2
Takahashi, Y.3
Fukuyama, K.4
-
11
-
-
0031045585
-
Preparation of Selenomethionyl Proteins for Phase Determination
-
Carter, J. C. W, and Sweet, R. M, Eds, pp, Academic Press, New York
-
Doublié, S. (1997) Preparation of Selenomethionyl Proteins for Phase Determination, in Methods in Enzymology (Carter, J. C. W., and Sweet, R. M., Eds.) pp 523-530, Academic Press, New York.
-
(1997)
Methods in Enzymology
, pp. 523-530
-
-
Doublié, S.1
-
12
-
-
0025262173
-
Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): A vehicle for direct determination of three-dimensional structure
-
Hendrickson, W. A., Horton, J. R., and LeMaster, D. M. (1990) Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure, EMBO J. 9, 1665-1672.
-
(1990)
EMBO J
, vol.9
, pp. 1665-1672
-
-
Hendrickson, W.A.1
Horton, J.R.2
LeMaster, D.M.3
-
13
-
-
0031059866
-
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray Diffraction Data Collected in Oscillation Mode, in Methods in Enzymology (C. W. Carter, J., and Sweet, R. M., Eds.) pp 307-326, Academic Press, New York.
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray Diffraction Data Collected in Oscillation Mode, in Methods in Enzymology (C. W. Carter, J., and Sweet, R. M., Eds.) pp 307-326, Academic Press, New York.
-
-
-
-
14
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews, B. W. (1968) Solvent content of protein crystals, J. Mol. Biol. 33, 491-497.
-
(1968)
J. Mol. Biol
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
15
-
-
0033119895
-
Automated structure solution for MIR and MAD
-
Terwilliger, T. C., and Berendzen, J. (1999) Automated structure solution for MIR and MAD, Acta Crystallogr., Sect. D 55, 849-861.
-
(1999)
Acta Crystallogr., Sect. D
, vol.55
, pp. 849-861
-
-
Terwilliger, T.C.1
Berendzen, J.2
-
16
-
-
0033229974
-
Reciprocal-space solvent flattening
-
Terwilliger, T. C. (1999) Reciprocal-space solvent flattening, Acta Crystallogr., Sect. D 55, 1863-1871.
-
(1999)
Acta Crystallogr., Sect. D
, vol.55
, pp. 1863-1871
-
-
Terwilliger, T.C.1
-
17
-
-
0033896691
-
Maximum likelihood density modification
-
Terwilliger, T. C. (2000) Maximum likelihood density modification, Acta Crystallogr., Sect. D 56, 965-972.
-
(2000)
Acta Crystallogr., Sect. D
, vol.56
, pp. 965-972
-
-
Terwilliger, T.C.1
-
18
-
-
0002583957
-
Crystallography 31
-
Cowtan, K. (1994) DM: An automated procedure for phase improvement by density modification. Joint CCP4 and ESF-EACBM Newsletter on Protein, Crystallography 31, 34-38.
-
(1994)
, pp. 34-38
-
-
Cowtan, K.1
-
19
-
-
23844546311
-
Likelihood-enhanced fast translation functions
-
McCoy, A. J., Grosse-Kunstleve, R. W., Storoni, L. C., and Read, R. J. (2005) Likelihood-enhanced fast translation functions, Acta Crystallogr., Sect. D 61, 458-464.
-
(2005)
Acta Crystallogr., Sect. D
, vol.61
, pp. 458-464
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Storoni, L.C.3
Read, R.J.4
-
20
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley, P., and Cowtan, K. (2004) Coot: model-building tools for molecular graphics, Acta Crystallogr., Sect. D 60, 2126-2132.
-
(2004)
Acta Crystallogr., Sect. D
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
21
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Refinement of macromolecular structures by the maximum-likelihood method, Acta Crystallogr., Sect. D 53, 240-255.
-
(1997)
Acta Crystallogr., Sect. D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
22
-
-
0000243829
-
Procheck - a Program to check the stereochemical quality of protein structures
-
Laskowski, R. A., Macarthur, M. W., Moss, D. S., and Thornton, J. M. (1993) Procheck - a Program to check the stereochemical quality of protein structures, J. Appl. Crystallogr. 26, 283-291.
-
(1993)
J. Appl. Crystallogr
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
Macarthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
23
-
-
0013815214
-
Stereochemical criteria for polypeptide and protein chain conformations. II. Allowed conformations for a pair of peptide units
-
Ramakrishnan, C., and Ramachandran, G. N. (1965) Stereochemical criteria for polypeptide and protein chain conformations. II. Allowed conformations for a pair of peptide units, Biophys. J. 5, 909-933.
-
(1965)
Biophys. J
, vol.5
, pp. 909-933
-
-
Ramakrishnan, C.1
Ramachandran, G.N.2
-
24
-
-
0347383758
-
Modeller: Generation and refinement of homology-based protein structure models
-
Fiser, A., and Sali, A. (2003) Modeller: generation and refinement of homology-based protein structure models, Methods Enzymol. 374, 461-491.
-
(2003)
Methods Enzymol
, vol.374
, pp. 461-491
-
-
Fiser, A.1
Sali, A.2
-
25
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996) VMD: visual molecular dynamics, J. Mol. Graphics 14, 33-38.
-
(1996)
J. Mol. Graphics 14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
26
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl, E., Hess, B., and van der Spoel, D. (2001) GROMACS 3.0: A package for molecular simulation and trajectory analysis, J. Mol. Model. 7, 306-317.
-
(2001)
J. Mol. Model
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
van der Spoel, D.3
-
27
-
-
27944447344
-
Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes
-
Fischer, A. J., Rockwell, N. C., Jang, A. Y., Ernst, L. A., Waggoner, A. S., Duan, Y., Lei, H., and Lagarias, J. C. (2005) Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes, Biochemistry 44, 15203-15215.
-
(2005)
Biochemistry
, vol.44
, pp. 15203-15215
-
-
Fischer, A.J.1
Rockwell, N.C.2
Jang, A.Y.3
Ernst, L.A.4
Waggoner, A.S.5
Duan, Y.6
Lei, H.7
Lagarias, J.C.8
-
28
-
-
4644367297
-
Crystal structure of the oxygen-dependant coproporphyrinogen oxidase (Hem13p) of Saccharomyces cerevisiae
-
Phillips, J. D., Whitby, F. G., Warby, C. A., Labbe, P., Yang, C., Pflugrath, J. W., Ferrara, J. D., Robinson, H., Kushner, J. P., and Hill, C. P. (2004) Crystal structure of the oxygen-dependant coproporphyrinogen oxidase (Hem13p) of Saccharomyces cerevisiae, J. Biol. Chem. 279, 38960-38968.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 38960-38968
-
-
Phillips, J.D.1
Whitby, F.G.2
Warby, C.A.3
Labbe, P.4
Yang, C.5
Pflugrath, J.W.6
Ferrara, J.D.7
Robinson, H.8
Kushner, J.P.9
Hill, C.P.10
-
29
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L., and Sander, C. (1993) Protein structure comparison by alignment of distance matrices, J. Mol. Biol. 233, 123-138.
-
(1993)
J. Mol. Biol
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
30
-
-
0003318951
-
Geometry versus basicity of bilatrienes-stretched and helical protonated biliverdins
-
Krois, D. (1991) Geometry versus basicity of bilatrienes-stretched and helical protonated biliverdins, Monatsh. Chem. 122, 495-506.
-
(1991)
Monatsh. Chem
, vol.122
, pp. 495-506
-
-
Krois, D.1
-
31
-
-
33847800717
-
What makes proton-transfer fast
-
Kresge, A. J. (1975) What makes proton-transfer fast, Acc. Chem. Res. 8, 354-360.
-
(1975)
Acc. Chem. Res
, vol.8
, pp. 354-360
-
-
Kresge, A.J.1
-
32
-
-
0034872772
-
Purification and biochemical properties of phytochromobilin synthase from etiolated oat seedlings
-
McDowell, M. T., and Lagarias, J. C. (2001) Purification and biochemical properties of phytochromobilin synthase from etiolated oat seedlings, Plant Physiol. 126, 1546-1554.
-
(2001)
Plant Physiol
, vol.126
, pp. 1546-1554
-
-
McDowell, M.T.1
Lagarias, J.C.2
|