메뉴 건너뛰기




Volumn 7 VOLS, Issue , 2005, Pages 808-812

Evaluating estimates of markov models of sequence evolution through simulation

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; DATA REDUCTION; GENES; MATHEMATICAL MODELS; PARAMETER ESTIMATION;

EID: 33846918440     PISSN: 05891019     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (1)

References (18)
  • 1
    • 0029974748 scopus 로고    scopus 로고
    • Model of Amino Acid Substitution in Proteins Encoded by Mitochondrial DNA
    • J. Adachi and M. Hasegawa, "Model of Amino Acid Substitution in Proteins Encoded by Mitochondrial DNA", J. Mol. Evol., vol. 42, 1996. pp 459-468.
    • (1996) J. Mol. Evol , vol.42 , pp. 459-468
    • Adachi, J.1    Hasegawa, M.2
  • 2
    • 0033920569 scopus 로고    scopus 로고
    • Plastid Genome Phylogeny and a Model of Amino Acid Substitution for Proteins Encoded by Chloroplast DNA
    • J. Adachi, P.J. Waddell, W. Martin, and M. Hasegawa, "Plastid Genome Phylogeny and a Model of Amino Acid Substitution for Proteins Encoded by Chloroplast DNA", J. Mol. Evol., vol. 50, 2000, pp 348-358.
    • (2000) J. Mol. Evol , vol.50 , pp. 348-358
    • Adachi, J.1    Waddell, P.J.2    Martin, W.3    Hasegawa, M.4
  • 3
    • 0031453046 scopus 로고    scopus 로고
    • Estimation of Reversible Substitution Matrices from Multiple Pairs of Sequences
    • L. Arvestad and W.J. Bruno, "Estimation of Reversible Substitution Matrices from Multiple Pairs of Sequences", J. Mol. Evol., vol. 45, 1997. pp 696-703.
    • (1997) J. Mol. Evol , vol.45 , pp. 696-703
    • Arvestad, L.1    Bruno, W.J.2
  • 4
    • 0000228203 scopus 로고
    • A Model of Evolutionary Change in Proteins, In M. O. Dayhoff editor
    • M.O. Dayhoff, R.M. Schwartz, and B.C. Orcutt, "A Model of Evolutionary Change in Proteins", In M. O. Dayhoff editor, Atlas of Protein Sequence and Structure, vol. 5, suppl. 3, 1978, pp 345-352.
    • (1978) Atlas of Protein Sequence and Structure , vol.5 , Issue.SUPPL. 3 , pp. 345-352
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 7
    • 0026656815 scopus 로고
    • Exhaustive Matching of the Entire Protein Sequence Database
    • G.H. Gonnet, M.A. Cohen, and S.A. Benner, "Exhaustive Matching of the Entire Protein Sequence Database", Science, vol. 256, 1992, 1443-1445.
    • (1992) Science , vol.256 , pp. 1443-1445
    • Gonnet, G.H.1    Cohen, M.A.2    Benner, S.A.3
  • 8
    • 0028362880 scopus 로고
    • Application and Accuracy of Molecular Phylogenies
    • D.M. Hillis, J.P. Huelsenbeck, and C.W. Cunningham, "Application and Accuracy of Molecular Phylogenies", Science, vol. 264, 1994, 671-677.
    • (1994) Science , vol.264 , pp. 671-677
    • Hillis, D.M.1    Huelsenbeck, J.P.2    Cunningham, C.W.3
  • 9
    • 0026534986 scopus 로고
    • Experimental Phylogenetics: Generation of a Known Phylogeny
    • D.M. Hillis, J.J Bull, M.E. White, M.R. Badgett, and I.J. Molineux, "Experimental Phylogenetics: Generation of a Known Phylogeny", Science, vol. 255, 1992, 589-592.
    • (1992) Science , vol.255 , pp. 589-592
    • Hillis, D.M.1    Bull, J.J.2    White, M.E.3    Badgett, M.R.4    Molineux, I.J.5
  • 10
    • 0026691182 scopus 로고
    • The Rapid Generation of Mutation Data Matrices from Protein Sequences
    • D.T. Jones, W.R. Taylor, and J.M. Thornton, "The Rapid Generation of Mutation Data Matrices from Protein Sequences", CABIOS, vol. 8, 1992, 275-282.
    • (1992) CABIOS , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 11
    • 0028177080 scopus 로고
    • A Simulation Comparison of Phylogeny Algorithms Under Equal and Unequal Evolutionary Rates
    • M.K Kuhner and J. Felsenstein, "A Simulation Comparison of Phylogeny Algorithms Under Equal and Unequal Evolutionary Rates", Mol. Biol. Evol., vol. 11, 1994, 459-468.
    • (1994) Mol. Biol. Evol , vol.11 , pp. 459-468
    • Kuhner, M.K.1    Felsenstein, J.2
  • 12
    • 0034922289 scopus 로고    scopus 로고
    • Modeling Amino Acid Replacement
    • T. Müller and M. Vingron, "Modeling Amino Acid Replacement", J. Comput. Biol., vol. 7, 2000, 761-776.
    • (2000) J. Comput. Biol , vol.7 , pp. 761-776
    • Müller, T.1    Vingron, M.2
  • 13
    • 0742286995 scopus 로고    scopus 로고
    • A Transition Probability Model for Amino Acid Substitutions from Blocks
    • S. Veerassamy, A. Smith, and E. Tillier, "A Transition Probability Model for Amino Acid Substitutions from Blocks", J. Comput. Biol., vol. 10, 2003, 997-1010.
    • (2003) J. Comput. Biol , vol.10 , pp. 997-1010
    • Veerassamy, S.1    Smith, A.2    Tillier, E.3
  • 14
    • 0035031966 scopus 로고    scopus 로고
    • A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach
    • S. Whelan and N. Goldman, "A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach", Mol. Biol. Evol., vol. 18, 2001, 691-699.
    • (2001) Mol. Biol. Evol , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 15
    • 0032843848 scopus 로고    scopus 로고
    • Distribution of Statistics Used for the Comparison of Models of Sequence Evolution in Phylogenetics
    • S. Whelan and N. Goldman, "Distribution of Statistics Used for the Comparison of Models of Sequence Evolution in Phylogenetics", Mol. Biol. Evol., vol. 16, 1999, 1292-1299.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 1292-1299
    • Whelan, S.1    Goldman, N.2
  • 16
    • 33846898348 scopus 로고    scopus 로고
    • K. Xu, Stochastic Modeling of Biological Sequence Evolution, EECS Master's Thesis, Massachusetts Institute of Technology, 2005.
    • K. Xu, "Stochastic Modeling of Biological Sequence Evolution", EECS Master's Thesis, Massachusetts Institute of Technology, 2005.
  • 17
    • 0028214103 scopus 로고
    • Estimating the Pattern of Nucleotide Substitution
    • Z. Yang, "Estimating the Pattern of Nucleotide Substitution", J. Mol. Evol., vol. 39, 105-111, 1994.
    • (1994) J. Mol. Evol , vol.39 , pp. 105-111
    • Yang, Z.1
  • 18
    • 0031792828 scopus 로고    scopus 로고
    • Models of Amino Acid Substitution and Applications to Mitochondrial Protein Evolution
    • Z. Yang, R. Nielsen, and M. Hasegawa, "Models of Amino Acid Substitution and Applications to Mitochondrial Protein Evolution", Mol. Biol. Evol., vol. 15, 1998, 1600-1611.
    • (1998) Mol. Biol. Evol , vol.15 , pp. 1600-1611
    • Yang, Z.1    Nielsen, R.2    Hasegawa, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.