-
1
-
-
0034492205
-
Conspecificity and Indo-Pacific distribution of Symbiodinium genotypes (Dinophyceae) from giant clams
-
Baillie, B. K., Belda-Baillie, C. A. and Maruyama, T. 2000. Conspecificity and Indo-Pacific distribution of Symbiodinium genotypes (Dinophyceae) from giant clams. J. Phycol. 36: 1153-61.
-
(2000)
J. Phycol
, vol.36
, pp. 1153-1161
-
-
Baillie, B.K.1
Belda-Baillie, C.A.2
Maruyama, T.3
-
2
-
-
0000526510
-
Coral bleaching as an adaptive mechanism
-
Buddemeier, R. W. and Fautin, D. G. 1993. Coral bleaching as an adaptive mechanism. Bioscience 43: 320-6.
-
(1993)
Bioscience
, vol.43
, pp. 320-326
-
-
Buddemeier, R.W.1
Fautin, D.G.2
-
3
-
-
0032727278
-
Phylogenetic position of Symbiodinium (Dinophyceae) isolates from Tridacnids (Bivalvia), Cardids (Bivalvia), a sponge (Porifera), a soft coral (Anthozoa), and a free-living strain
-
Carlos, A. A., Baillie, B. K., Kawachi, M. and Maruyama, T. 1999. Phylogenetic position of Symbiodinium (Dinophyceae) isolates from Tridacnids (Bivalvia), Cardids (Bivalvia), a sponge (Porifera), a soft coral (Anthozoa), and a free-living strain. J. Phycol. 35: 1054-62.
-
(1999)
J. Phycol
, vol.35
, pp. 1054-1062
-
-
Carlos, A.A.1
Baillie, B.K.2
Kawachi, M.3
Maruyama, T.4
-
4
-
-
0346270754
-
A stable association of the stress-tolerant zooxanthellae, Symbiodinium Clade D, with the low temperature-tolerant coral, Oulastrea crispata (Scleractinia: Faviidae) in subtropical non-reefal coral communites
-
Chen, A. C., Lam, K. K., Nakano, Y. and Tsai, W. S. 2003. A stable association of the stress-tolerant zooxanthellae, Symbiodinium Clade D, with the low temperature-tolerant coral, Oulastrea crispata (Scleractinia: Faviidae) in subtropical non-reefal coral communites. Zool. Stud. 42: 540-50.
-
(2003)
Zool. Stud
, vol.42
, pp. 540-550
-
-
Chen, A.C.1
Lam, K.K.2
Nakano, Y.3
Tsai, W.S.4
-
5
-
-
22744437102
-
Fluctuating algal symbiont communities in Acropora palifera (Scleractinia: Acroporidae) from Taiwan
-
Chen, A. C., Wang, J. T., Fang, L. S. and Yang, Y. W. 2005. Fluctuating algal symbiont communities in Acropora palifera (Scleractinia: Acroporidae) from Taiwan. Mar. Ecol. Prog. Ser. 295: 113-21.
-
(2005)
Mar. Ecol. Prog. Ser
, vol.295
, pp. 113-121
-
-
Chen, A.C.1
Wang, J.T.2
Fang, L.S.3
Yang, Y.W.4
-
6
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-91.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
7
-
-
0000488579
-
The utility of ITS sequences in assessing relationships among zooxanthellae and corals
-
Hunter, C. L., Morden, C. W. and Smith, C. M. 1997. The utility of ITS sequences in assessing relationships among zooxanthellae and corals. Proc. 8th Int. Coral Reef Symp. 2: 1599-602.
-
(1997)
Proc. 8th Int. Coral Reef Symp
, vol.2
, pp. 1599-1602
-
-
Hunter, C.L.1
Morden, C.W.2
Smith, C.M.3
-
8
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-20.
-
(1980)
J. Mol. Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
9
-
-
30344443941
-
Stable Symbiodinium composition in the sea fan Gorgonia ventalina during temperature and disease stress
-
Kirk, N. L., Ward, J. R. and Coffroth, M. A. 2005. Stable Symbiodinium composition in the sea fan Gorgonia ventalina during temperature and disease stress. Biol. Bull. 209: 227-34.
-
(2005)
Biol. Bull
, vol.209
, pp. 227-234
-
-
Kirk, N.L.1
Ward, J.R.2
Coffroth, M.A.3
-
10
-
-
0036944045
-
Diversity and community structure of symbiotic dinoflagellates from Caribbean coral reefs
-
LaJeunesse, T. C. 2002. Diversity and community structure of symbiotic dinoflagellates from Caribbean coral reefs. Mar. Biol. 141: 387-400.
-
(2002)
Mar. Biol
, vol.141
, pp. 387-400
-
-
LaJeunesse, T.C.1
-
11
-
-
14544306214
-
Species' radiations of symbiotic dinoflagellates in the Atlantic and Indo-Pacific since the Miocene-Pliocene transition
-
LaJeunesse, T. C. 2005. 'Species' radiations of symbiotic dinoflagellates in the Atlantic and Indo-Pacific since the Miocene-Pliocene transition. Mol. Biol. Evol. 22: 570-81.
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 570-581
-
-
LaJeunesse, T.C.1
-
12
-
-
0141540390
-
Low symbiont diversity in southern Great Barrier Reef corals, relative to those of the Caribbean
-
LaJeunesse, T. C., Loh, W. K. W., Van Woesik, R., Hoegh-Guldberg, O., Schmidt, G. W. and Fitt, W. K. 2003. Low symbiont diversity in southern Great Barrier Reef corals, relative to those of the Caribbean. Limnol. Oceanogr. 48: 2046-54.
-
(2003)
Limnol. Oceanogr
, vol.48
, pp. 2046-2054
-
-
LaJeunesse, T.C.1
Loh, W.K.W.2
Van Woesik, R.3
Hoegh-Guldberg, O.4
Schmidt, G.W.5
Fitt, W.K.6
-
13
-
-
12344304652
-
Closely related Symbiodinium spp. differ in relative dominance in coral reef communities across environmental, latitudinal and biogeographic gradients
-
LaJeunesse, T. C., Bhagooli, R., Hidaka, M. et al. 2004a. Closely related Symbiodinium spp. differ in relative dominance in coral reef communities across environmental, latitudinal and biogeographic gradients. Mar. Ecol. Prog. Ser. 284: 147-61.
-
(2004)
Mar. Ecol. Prog. Ser
, vol.284
, pp. 147-161
-
-
LaJeunesse, T.C.1
Bhagooli, R.2
Hidaka, M.3
-
14
-
-
11244352230
-
High diversity and host specificity observed among symbiotic dinoflagellates in reef coral communities from Hawaii
-
LaJeunesse, T. C., Thornhill, D. J., Cox, E. F., Stanton, F. G., Fitt, W. K. and Schmidt, G. W. 2004b. High diversity and host specificity observed among symbiotic dinoflagellates in reef coral communities from Hawaii. Coral Reefs 23: 596-603.
-
(2004)
Coral Reefs
, vol.23
, pp. 596-603
-
-
LaJeunesse, T.C.1
Thornhill, D.J.2
Cox, E.F.3
Stanton, F.G.4
Fitt, W.K.5
Schmidt, G.W.6
-
15
-
-
0000755853
-
Reef corals: Mutualistic symbioses adapted to nutrient-poor environments
-
Muscatine, L. and Porter, J. W. 1977. Reef corals: mutualistic symbioses adapted to nutrient-poor environments. Bioscience 27: 454-60.
-
(1977)
Bioscience
, vol.27
, pp. 454-460
-
-
Muscatine, L.1
Porter, J.W.2
-
16
-
-
18044386033
-
Reproduction of Zoanthus sansibaricus in the infra-littoral zone at Taisho Lava Field, Sakurajima, Kagoshima, Japan
-
Ono, S., Reimer, J. D. and Tsukahara, J. 2005. Reproduction of Zoanthus sansibaricus in the infra-littoral zone at Taisho Lava Field, Sakurajima, Kagoshima, Japan. Zool. Sci. 22: 247-55.
-
(2005)
Zool. Sci
, vol.22
, pp. 247-255
-
-
Ono, S.1
Reimer, J.D.2
Tsukahara, J.3
-
17
-
-
0035005111
-
Molecular identification of algal endosymbionts in large miliolid Foraminifera: 2. Dinoflagellates
-
Pawlowski, J., Holzmann, M., Fahrni, J. F., Pochon, X. and Lee, J. J. 2001. Molecular identification of algal endosymbionts in large miliolid Foraminifera: 2. Dinoflagellates. J. Eukaryot. Microbiol. 48: 368-73.
-
(2001)
J. Eukaryot. Microbiol
, vol.48
, pp. 368-373
-
-
Pawlowski, J.1
Holzmann, M.2
Fahrni, J.F.3
Pochon, X.4
Lee, J.J.5
-
18
-
-
0035688587
-
High genetic diversity and relative specificity among Symbiodinium-like endosymbiotic dinoflagellates in sorotid foraminiferans
-
Pochon, X., Pawlowski, J., Zaninetti, L. and Rowan, R. 2001. High genetic diversity and relative specificity among Symbiodinium-like endosymbiotic dinoflagellates in sorotid foraminiferans. Mar. Biol. 139: 1069-78.
-
(2001)
Mar. Biol
, vol.139
, pp. 1069-1078
-
-
Pochon, X.1
Pawlowski, J.2
Zaninetti, L.3
Rowan, R.4
-
19
-
-
11244305473
-
Biogeographic partitioning and host specialization among foraminiferan dinoflagellate symbionts (Symbiodinium; Dinophyta)
-
Pochon, X., LaJeunesse, T. C. and Pawlowski, J. 2004. Biogeographic partitioning and host specialization among foraminiferan dinoflagellate symbionts (Symbiodinium; Dinophyta). Mar. Biol. 146: 17-27.
-
(2004)
Mar. Biol
, vol.146
, pp. 17-27
-
-
Pochon, X.1
LaJeunesse, T.C.2
Pawlowski, J.3
-
20
-
-
28844470439
-
Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium
-
Pochon, X., Montoya-Burgos, J. I., Stadelmann, B. and Pawlowski, J. 2006. Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium. Mol. Phylogenet. Evol. 38: 20-30.
-
(2006)
Mol. Phylogenet. Evol
, vol.38
, pp. 20-30
-
-
Pochon, X.1
Montoya-Burgos, J.I.2
Stadelmann, B.3
Pawlowski, J.4
-
21
-
-
3042545403
-
Reconsidering Zoanthus spp. diversity: Evidence of conspecificity within four previously presumed species
-
Reimer, J. D., Ono, S., Fujiwara, Y., Takishita, K. and Tsukahara, J. 2004. Reconsidering Zoanthus spp. diversity: Evidence of conspecificity within four previously presumed species. Zool. Sci. 21: 517-25.
-
(2004)
Zool. Sci
, vol.21
, pp. 517-525
-
-
Reimer, J.D.1
Ono, S.2
Fujiwara, Y.3
Takishita, K.4
Tsukahara, J.5
-
22
-
-
33646579370
-
Morphological and molecular revision of Zoanthus (Anthozoa: Hexacorallia) from southwestern Japan with description of two new species
-
Reimer, J. D., Ono, S., Iwama, A., Takishita, K., Tsukahara, J. and Maruyama, T. 2006a. Morphological and molecular revision of Zoanthus (Anthozoa: Hexacorallia) from southwestern Japan with description of two new species. Zool. Sci. 23: 261-75.
-
(2006)
Zool. Sci
, vol.23
, pp. 261-275
-
-
Reimer, J.D.1
Ono, S.2
Iwama, A.3
Takishita, K.4
Tsukahara, J.5
Maruyama, T.6
-
23
-
-
33751010454
-
-
Reimer, J. D., Takishita, K. and Maruyama, T. 2006b. Molecular identification of symbiotic dinoflagellates (Symbiodinium spp.) from Palythoa spp. (Anthozoa: Hexacorallia) in Japan. Coral Reefs DOI 10.1007/s00338-006-0151-4.
-
Reimer, J. D., Takishita, K. and Maruyama, T. 2006b. Molecular identification of symbiotic dinoflagellates (Symbiodinium spp.) from Palythoa spp. (Anthozoa: Hexacorallia) in Japan. Coral Reefs DOI 10.1007/s00338-006-0151-4.
-
-
-
-
24
-
-
33744479387
-
Latitudinal and intracolony ITS-rDNA sequence variation in the symbiotic dinoflagellate genus Symbiodinium (Dinophyceae) in Zoanthus sansibaricus (Anthozoa: Hexacorallia)
-
Reimer, J. D., Takishita, K., Ono, S., Tsukahara, J. and Maruyama, T. 2006c. Latitudinal and intracolony ITS-rDNA sequence variation in the symbiotic dinoflagellate genus Symbiodinium (Dinophyceae) in Zoanthus sansibaricus (Anthozoa: Hexacorallia). Phycol. Res. 54: 122-32.
-
(2006)
Phycol. Res
, vol.54
, pp. 122-132
-
-
Reimer, J.D.1
Takishita, K.2
Ono, S.3
Tsukahara, J.4
Maruyama, T.5
-
25
-
-
0025267792
-
The general stochastic model of nucleotide substitution
-
Rodriguez, F., Oliver, J. L., Marin, A. and Medina, J. R. 1990. The general stochastic model of nucleotide substitution. J. Theor. Biol. 142: 485-501.
-
(1990)
J. Theor. Biol
, vol.142
, pp. 485-501
-
-
Rodriguez, F.1
Oliver, J.L.2
Marin, A.3
Medina, J.R.4
-
26
-
-
0142092439
-
Symbiont diversity within the scleractinian coral Plesiastrea versipora, across the northwestern Pacific
-
Rodriguez-Lanetty, M. and Hoegh-Guldberg, O. 2003. Symbiont diversity within the scleractinian coral Plesiastrea versipora, across the northwestern Pacific. Mar. Biol. 143: 501-9.
-
(2003)
Mar. Biol
, vol.143
, pp. 501-509
-
-
Rodriguez-Lanetty, M.1
Hoegh-Guldberg, O.2
-
27
-
-
0041386108
-
Bayesian phylogenetic inference under mixed models
-
Ronquist, F. and Huelsenbeck, J. P. 2003. Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-4.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
28
-
-
0001452304
-
A molecular genetic classification of zooxanthellae and the evolution of animal-algal symbiosis
-
Rowan, R. and Powers, D. A. 1991. A molecular genetic classification of zooxanthellae and the evolution of animal-algal symbiosis. Science 251: 1348-51.
-
(1991)
Science
, vol.251
, pp. 1348-1351
-
-
Rowan, R.1
Powers, D.A.2
-
29
-
-
0026600229
-
Ribosomal RNA sequences and the diversity of symbiotic dinoflagellates (zooxanthellae)
-
Rowan, R. and Powers, D. A. 1992. Ribosomal RNA sequences and the diversity of symbiotic dinoflagellates (zooxanthellae). Proc. Natl. Acad. Sci. USA 89: 3639-43.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 3639-3643
-
-
Rowan, R.1
Powers, D.A.2
-
30
-
-
0030855057
-
Landscape ecology of algal symbionts creates variation in episodes of coral bleaching
-
Rowan, R., Knowlton, N., Baker, A. and Jara, J. 1997. Landscape ecology of algal symbionts creates variation in episodes of coral bleaching. Nature 388: 265-9.
-
(1997)
Nature
, vol.388
, pp. 265-269
-
-
Rowan, R.1
Knowlton, N.2
Baker, A.3
Jara, J.4
-
31
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-25.
-
(1987)
Mol. Biol. Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
32
-
-
0034752450
-
Genetic comparisons of freshly isolated versus cultured symbiotic dinoflagellates: Implications for extrapolating to the intact symbiosis
-
Santos, S. R., Taylor, D. J. and Coffroth, M. A. 2001. Genetic comparisons of freshly isolated versus cultured symbiotic dinoflagellates: Implications for extrapolating to the intact symbiosis. J. Phycol. 37: 900-12.
-
(2001)
J. Phycol
, vol.37
, pp. 900-912
-
-
Santos, S.R.1
Taylor, D.J.2
Coffroth, M.A.3
-
33
-
-
0348226830
-
Molecular characterization of nuclear small subunit (18S)-rDNA pseudogenes in a symbiotic dinoflagellate (Symbiodinium, Dinophyta)
-
Santos, S. R., Kinzie, R. A. III, Sakai, K. and Coffroth, M. A. 2003. Molecular characterization of nuclear small subunit (18S)-rDNA pseudogenes in a symbiotic dinoflagellate (Symbiodinium, Dinophyta). J. Eukaryot Microbiol. 50: 417-21.
-
(2003)
J. Eukaryot Microbiol
, vol.50
, pp. 417-421
-
-
Santos, S.R.1
Kinzie III, R.A.2
Sakai, K.3
Coffroth, M.A.4
-
35
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. and Higgins, D. G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-82.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
36
-
-
0035543261
-
Repopulation of zooxanthellae in the Caribbean corals Montastraea annularis and M. faveolata following experimental and disease-associated bleaching
-
Toller, W. W., Rowan, R. and Knowlton, N. 2001. Repopulation of zooxanthellae in the Caribbean corals Montastraea annularis and M. faveolata following experimental and disease-associated bleaching. Biol. Bull. 201: 360-73.
-
(2001)
Biol. Bull
, vol.201
, pp. 360-373
-
-
Toller, W.W.1
Rowan, R.2
Knowlton, N.3
-
37
-
-
33846933164
-
Sea Anemones in Japanese Waters (in Japanese)
-
Tokyo, pp
-
Uchida, H. 2001. Sea Anemones in Japanese Waters (in Japanese). TBS Britannica, Tokyo, pp. 122-4.
-
(2001)
TBS Britannica
, pp. 122-124
-
-
Uchida, H.1
-
38
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal genes for phylogenetics
-
Innis, M. A, Gelfanfd, D. H, Sninsky, J. J. and White, T. J, Eds, Academic Press, San Diego, USA, pp
-
White, T. J., Bruns, T., Lee, S. and Taylor, W. J. 1990. Amplification and direct sequencing of fungal ribosomal genes for phylogenetics. In Innis, M. A., Gelfanfd, D. H., Sninsky, J. J. and White, T. J. (Eds) PCR Protocols: a Guide to Methods and Applications. Academic Press, San Diego, USA, pp. 315-22.
-
(1990)
PCR Protocols: A Guide to Methods and Applications
, pp. 315-322
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, W.J.4
|