Computer-aided design of nano-filter construction using DNA self-assembly

Nanoscale Research Letters

Volumn 2, Issue 1, 2007, Pages 24-27

  Mohammadzadegan, Reza ^a   Mohabatkar, Hassan ^a  

^a SHIRAZ UNIVERSITY   (Iran)

Author keywords

Computer aided design; DNA; Nano filter; Self assembly

Indexed keywords

EID: 33846878535     PISSN: 19317573     EISSN: 1556276X     Source Type: Journal    
DOI: 10.1007/s11671-006-9024-6     Document Type: Article

References (37)

1. N.C. Seeman, J. Theor. Biol. 99, 237 (1982)
2. B.H. Robinson, N.C. Seeman, Protein Eng. 4, 295 (1987)
3. N.C. Seeman, Nature 421, 427 (2003)
4. D. Davis, R. Dulbecco, H.N. Eisen, H.S. Ginsberg Microbiology (J.B. Lippincott-Pennsylvabnia, 1990 [ISBN 0397506899])
5. C. Dwyer, S.H. Park, T.H. LaBean, A.R. Lebeck, Foundations of Nanoscience: Self-Assembled Architectures and Devices (Snowbird, Utah, 2005), pp. 187-191
6. A. Carbone, N.C. Seeman, Circuits and programmable self-assembling DNA structures. Proc. Natl. Acad. Sci. 99, 1 (2002)
7. M.A. Batalia, E.R.B. Protozanova, R.B. Macgregor Jr., D. Erie, Nano Lett. 2, 269 (2002)
8. P.W.K. Rothemund, Presented at IEEE/ACM International Conference on Computer Aided Design (ICCAD) (2005)
9. U. Feldkamp, S. Saghafi, W. Banzhaf, H. Rauhe, Proceedings of the Seventh International Workshop on DNA Based Computers (DNA7) 2340 (2001), p. 23
10. J.D. Watson, F.H.C. Crick, Nature 171, 737 (1953)
11. J.D. Watson, DNA: The Secret of Life (Knopf 2003 [ISBN 0375415467])
12. J.D. Watson, The Double Helix: A Personal Account of the Discovery of the Structure of DNA (Signet 1969 [ISBN 0451627873])
13. S. Chomet, DNA Genesis of a Discovery (Newman-Hemisphere Press, London, 1994)
14. K.R. Miller, J. Levin, Biology (Pearson Prentice Hall-New Jersey, 2003 [ISBN 013036701X])
15. H. Qiu, J.C. Dewan, N.C. Seeman, J. Mol. Biol. 267, 881 (1997)
16. N.C. Seeman, Mater. Today 1, 24 (2003)
17. C.A. Mirkin, R.L. Letsinger, R.C. Mucic, J.J. Storhoff, Nature 382, 607 (1996)
18. A.P. Alivisatos, K.P. Johnsson, X. Peng, T.E. Wilson, C.J. Loweth, M.P. Bruchez Jr., P.G. Schultz, Nature 382, 609 (1996)
19. T.F. Smith, M.S. Waterman, J. Mol. Biol. 147(1), 195 (1981)
20. E.W. Myers, W. Miller, Comput. Appl. Biosci 4(1), 11 (1988)
21. O. Gotoh, J. Mol. Biol. 162(3), 705 (1982)
22. S.B. Needleman, C.D. Wunsch, J. Mol. Biol. 48(3), 443 (1970)
23. M. Liu , N.A. Amro, C.S. Chow, G. Liu, Nano Lett. 2(8), 863 (2002)
24. E. Braun, Y. Eichen, U. Sivan, G. Ben-Yoseph, Nature 391, 775 (1998)
25. I. Willner, Science 298, 2407 (2002)
26. K. Keren, M. Krueger, R. Gilad, G. Ben-Yoseph, U. Sivan, E. Braun, Science 297(5578), 72 (2002)
27. T.G. Drummond, M.G. Hill, J.K. Barton, Nat. Biotechnol. 21(10), 1192 (2003)
28. R.P. Fahlman, D. Sen, J. Am. Chem. Soc. 124(17), 4610 (2002)
29. M. Mertig, L.C. Ciacchi, R. Seidel, W. Pompe, A. De Vita, Nano Lett. 2(8), 841 (2002)
30. E.K. Freyhult, K. Andersson, M.G. Gustafsson, J. Biophys. 84, 2264 (2003)
31. F. Yoshida, J.G. Topliss, J. Med. Chem. 43(13), 2575 (2000)
32. D.M. Hawkins, S.C. Basak, X. Shi, J. Chem. Inf. Comput. Sci. 41(3), 663 (2001)
33. K. Keren, R.S. Berman, E. Buchstab, U. Sivan, E. Braun, Science 302(5649), 1380 (2003)
34. Z.X. Deng, C.D. Mao, Angew. Chem. Int. Ed. Engl. 43(31), 4068 (2004)
35. J. Richter, R. Seidel, R. Kirsch, M. Mertig, W. Pompe, J. Plaschke, H.K. Schackert, Adv. Mater. 12(7), 507 (2000)
36. C.F. Monson, A.T. Woolley, Nano Lett. 3(3), 359 (2003)
37. G. Braun, K. Inagaki, R.A. Estabrook, D.K. Wood, E. Levy, A.N. Cleland, G.F. Strouse, N.O. Reich, Langmuir 21(23), 10699 (2005)