Cytological diploidization and rapid genome changes of the newly synthesized allotetraploids Cucumis x hytivus

Planta

Volumn 225, Issue 3, 2007, Pages 603-614

  Chen, Longzheng ^a   Lou, Qunfeng ^a   Zhuang, Yong ^a   Chen, Jinfeng ^a   Zhang, Xiaoqing ^a   Wolukau, Joseph N ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

AFLP; Allotetraploids; Cucumis; Cytology; Diploidization; Genome changes

Indexed keywords

ARTICLE; DIPLOIDY; GENE EXPRESSION REGULATION; GENETICS; GENOME; MEIOSIS; MELON; PLANT LEAF; POLYPLOIDY; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

CUCUMIS; DIPLOIDY; GENE EXPRESSION REGULATION, PLANT; GENOME, PLANT; MEIOSIS; PLANT LEAVES; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POLYPLOIDY;

CUCUMIS; CUCUMIS HYSTRIX; CUCUMIS HYTIVUS; CUCUMIS SATIVUS;

EID: 33846850472     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-006-0381-2     Document Type: Article

References (50)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Axesson T, Bowman CM, Sharpe AG, Lydiate DJ, Lagercrantz U (2000) Amphidiploid Brassica juncea contains conserved progenitor genomes. Genome 43:679-688
3. Baumel A, Ainouche M, Kalendar R, Schulman AH (2002) Retrotransposons and genomic stability in populations of the young allopolyploid species Spartina anglica C. E. Hubbard (Poaceae). Mol Biol Evol 19:1218-1227
4. Bennett ST, Kenton AY, Bennett MD (1992) Genomic in situ hybridization reveals the allopolyploid nature of Millium mantianum (Gramineae). Chromosoma 101:420-424
5. Chen JF, Kirkbride JJr (2000) A new synthetic species of Cucumis (Cucurbitaceae) from interspecific hybridization and chromosome doubling. Brittonia 52:315-319
6. Chen JF, Isshiki S, Tashiro Y, Miyazaki S (1995) Studies on a wild cucumber from China (Cucumis hystrix Chakr.). I.Genetic distances C. hysrtix and two cultivated Cucumis species(C. sativus L. and C. melo L.) based on isozyme analysis. J Jpn Soc Hort Sci 64(suppl. 2):264-265
7. Chen JF, Staub JE, Tashiro Y, Isshiki S, Miyazaki S (1997) Successful interspecific hybridization between Cucumis sativus L. and Cucumis hystrix Chakr. Euphytica 96:413-419
8. Chen JF, Staub JE, Jiang JM (1998) A reevaluation of karyotype in cucumber (Cucumis sativus L.). Genet Resour Crop Evol 45:301-305
9. Chen JF, Staub JE, Adelberg J, Lewis S, Kunlle B (2002) Synthesis and preliminary characterization of a new species (Amphidiploid) in Cucumis. Euphytica 123:315-322
10. Chen JF, Staub J, Qian CH, Luo XD, Zhuang FY (2003) Reproduction and cytogenetic characterization of interspecific hybrids from Cucumis hystix chakr. x C. sativus L. Theor Appl Genet 106:688-695
11. Chen JF, Luo XD, Qian CH, Molly MJ, Staub J, Zhuang FY, Lou QF, Ren G (2004) Cucumis monosomic alien addition lines: morphological, cytological, and genotypic analyses. Theor Appl Genet 108:1343-1348
12. Comai L (2000) Genetic and epigenetic interactions in allopolyploidy plants. Plant Mol Biol 43:387-399
13. Comai L, Tyagi AP, Winter K, Holmes-Davis R, Reynolds SH, Stevens Y. Byer B (2000) Phenotypic instability and rapid gene silencing in newly formed Arabidopsis allopolyploids. Plant Cell 12:1551-1567
14. Comai L, Tyagi AP, Lysak MA (2003) FISH analysis of meiosis in Arabidopsis allopolyploids. Chromosome Res 11:217-226
15. Contento A, Heslop-Harrison JS, Schwarzacher T (2005) Diversity of a major repetitive DNA sequence in diploid and polyploid Triticeae. Cytogenet Genome Res 109:34-42
16. Dvorak J, Zhang HB (1990) Variation in repeated nucleotide sequence sheds light on the phylogeny of the wheat B and G genome. Proc Natl Acad Sci USA 87:9640-9644
17. Eckert KA, Mowery A, Hile SE (2002) Misalignment-mediated DNA polymerase beta mutations: comparison of microsatellite frame-shift error rates using a forward mutation assay. Biochemistry 41:10490-10498
18. Feldman M, Levy AA (2005) Allopolyploidy-a shaping force in the evolution of wheat genomes. Cytogenet Genome Res 109:250-258
19. Feldman M, Liu B, Sehgal G, Abbo S, Levy AA, Vega JM (1997) Rapid elimination of low copy DNA sequence in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes. Genetics 147:1381-1387
20. Helentjaris T, Weber D, Wright S (1988) Identification of the genomic locations of duplicate nucleotide sequences in maize by analysis of restriction fragment length polymorphisms. Genetics 118:353-363
21. Kirkbride J Jr (1993) Biosystematic monograph of the genus Cucumis (Cucurbitaceae). Parkway Publishers, Boone, pp 84-88
22. Lee HS, Chen ZJ (2000) Protein-coding genes are epigenetically regulated in Arabidopsis polyploids. Proc Natl Acad Sci USA 98:6753-6758
23. Leitch IJ, Bennett MD (1997) Polyploidy in angiosperms. Trends Plant Sci 2:470-476
24. Levin DA (1983) Polyploidy and novelty in flowering plants. Am Nat 122:1-25
25. Liu B, Wendel JF (2002) Non-mendelian phenomena in allopolyploid genome evolution. Curr Genomics 3:489-505
26. Liu B, Segal G, Vega JM (1997) Isolation and characterization of chromosome-specific DNA sequences from a chromosome arm genomic library of common wheat. Plant J 11:959
27. Liu B, Vega MJ, Feldman M (1998a) Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops II. Changes in low-copy coding DNA sequences. Genome 41:535-542
28. Liu B, Vega MJ, Segal G, Abbo S, Rodova M, Feldman M (1998b) Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. I. Changes in low-copy noncoding DNA sequences. Genome 41:272-277
29. Liu B, Brubaker CL, Mergeai G, Cronn RC, Wendel JF (2001) Polyploid formation in cotton is not accompanied by rapid genomic changes. Genome 44:321-330
30. Lukens LN, Pires JC, Leon E, Vogelzang R, Oslach L, Osborn T (2006) Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids. Plant Physiol 140:336-348
31. Ma XF, Gustafson JP (2005) Genome evolution of allopolyploids: a process of cytological and genetic diploidization. Cytogenet Genome Res 109:1-3
32. Madlung A, Masuelli RW, Watson B, Reynolds SH, Davison J, Comai L (2002) Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allopolyploids. Plant Physiol 129:733-746
33. Masterson J (1994) Stomatal size in fossil plants: evidence for polyploidy in majority of angiosperms. Science 264:421-424
34. McGire PE, Dvorak J (1982) Genetic regulation of heterogenetic chromosome paring in polyploid species of the genus Triticum Sensu lato. Can J Genet Cytol 24:57-82
35. Moore G (2002) Meiosis in allopolyploids the importance of "Teflon" chromosomes. Trends Genet 18:456-463
36. Murray HG, Thompson WF (1980) Rapid isolation of higher weight DNA. Nucleic Acids Res 8:4321
37. Ozkan H (2000) Genomic changes in newly synthesized amphiploids of Aegilops and Triticum. Ph.D. Thesis University of Cukurova
38. Ozkan H, Levy A, Feldman M (2001) Allopolyploid-induced rapid genomic evolution in the wheat (Aegilops-Triticum) group. Plant Cell 13:1735-1747
39. Panaud O, Chen X, McCouch SD (1996) Development of microsatellite markers and characterization of sample sequence lengthen polymorphism (SSLP) in rice (Oryza sativa L.). Mol Gen Genet 252:597-607
40. Richard GF, Paques F (2000) Mini- and microsatellite expansions: the recombination connection. EMBO Rep 1:122-126
41. Shaked H, Kashkush K, Ozakan H, Feldman M, Levy AA (2001) Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13:1749-1759
42. Soltis DE, Soltis PS (1995) The dynamic nature of polyploid genome. Proc Natl Acad Sci USA 92:8089-8091
43. Song K, Lu P, Tang K, Osborn TC (1995) Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc Natl Acad Sci USA 92:7719-7723
44. Stebbins GL (1971) Chromosomal evolution in higher plants. Addison-Wesley, New York
45. Thomas HM, Harper JA, Meredith MR, Morgan WG, King IP (1997) Physical mapping of ribosomal DNA sites in Festuca arundinacea and related species by in situ hybridization. Genome 40:406-410
46. Volkov RA, Borisjuk NV, Panchuk II, Schweizer D, Hem-leben V (1999) Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum. Mol Biol Evol 16:311-320
47. Vos P, Hogers R, Bleeker M, Reljans M, Lee T, Homes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
48. Wendel JF (2000) Genome evolution in polyploids. Plant Mol Biol 42:225-249
49. Whitkus R, Doebley J, Lee M (1992) Comparative genome mapping of sorghum and maize. Genetics 132:1119-1130
50. Zohary D, Feldman M (1962) Hybridization between amphidiploids and the evolution of polyploids in the wheat (Aegilops-Triticum) group. Evolution 16:44-61