-
1
-
-
0020480512
-
Recognition of protein coding regions in DNA sequences
-
Fickett,J.W. (1982) Recognition of protein coding regions in DNA sequences. Nucleic Acids Res., 10, 5303-5318.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 5303-5318
-
-
Fickett, J.W.1
-
2
-
-
0036772510
-
Comparative ab initio prediction of gene structures using pair HMMs
-
Meyer,I. and Durbin,R. (2002) Comparative ab initio prediction of gene structures using pair HMMs. Bioinformatics, 18, 1309-1318.
-
(2002)
Bioinformatics
, vol.18
, pp. 1309-1318
-
-
Meyer, I.1
Durbin, R.2
-
3
-
-
0035002015
-
Computational inference of homologous gene structures in the human genome
-
Yeh,R.F., Lim,L.P. and Burge,C.B. (2001) Computational inference of homologous gene structures in the human genome. Genome Res., 11, 803-816.
-
(2001)
Genome Res.
, vol.11
, pp. 803-816
-
-
Yeh, R.F.1
Lim, L.P.2
Burge, C.B.3
-
4
-
-
33846677232
-
Using TWINSCAN to predict gene structures in genomic DNA sequences
-
Hu,P. and Brent,M.R. (2003) Using TWINSCAN to predict gene structures in genomic DNA sequences. Curr. Protocols Bioinformatics, pp. 4.8.1-4.8.19.
-
(2003)
Curr. Protocols Bioinformatics
-
-
Hu, P.1
Brent, M.R.2
-
5
-
-
0036733640
-
Computational prediction of eukaryotic protein-coding genes
-
Zhang,M. (2002) Computational prediction of eukaryotic protein-coding genes. Nature Rev. Genet., 3, 698-709.
-
(2002)
Nature Rev. Genet.
, vol.3
, pp. 698-709
-
-
Zhang, M.1
-
6
-
-
0036796369
-
Current methods of gene prediction, their strengths and weaknesses
-
Mathé,C., Sagot,M.F., Schiex,T. and Rouzé,P. (2002) Current methods of gene prediction, their strengths and weaknesses. Nucleic Acids Res., 30, 4103-4117.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 4103-4117
-
-
Mathé, C.1
Sagot, M.F.2
Schiex, T.3
Rouzé, P.4
-
7
-
-
24644516306
-
A brief review of computational gene prediction methods
-
Wang,Z., Chen,Y. and Li,Y. (2004) A brief review of computational gene prediction methods. Genome Proteomics Bioinformatics, 2, 216-221.
-
(2004)
Genome Proteomics Bioinformatics
, vol.2
, pp. 216-221
-
-
Wang, Z.1
Chen, Y.2
Li, Y.3
-
8
-
-
0024610919
-
A tutorial on hidden Markov models and selected applications in speech recognition
-
Rabiner,L. (1989) A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE, 77, 257-285.
-
(1989)
Proc. IEEE
, vol.77
, pp. 257-285
-
-
Rabiner, L.1
-
9
-
-
0003516147
-
-
Cambridge University Press, Cambridge
-
Durbin,R., Eddy,S., Krogh,A. and Mitchison,G. (1998) Biological Sequence Analysis Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press, Cambridge.
-
(1998)
Biological Sequence Analysis Probabilistic Models of Proteins and Nucleic Acids
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitchison, G.4
-
10
-
-
0028058511
-
Gesture interface, modeling and learning
-
In IEEE Computer Society Press, San Diego, CA
-
Yang,J., Xu,Y. and Chen,C. (1994) Gesture interface, modeling and learning. In Proceedings of the 1994 IEEE International Conference on Robotics and Automation. IEEE Computer Society Press, San Diego, CA, pp. 1747-1752.
-
(1994)
Proceedings of the 1994 IEEE International Conference on Robotics and Automation
, pp. 1747-1752
-
-
Yang, J.1
Xu, Y.2
Chen, C.3
-
11
-
-
0022594196
-
An introduction to hidden Markov models
-
Rabiner,L. and Juang,B.H. (1986) An introduction to hidden Markov models. IEEE ASSP Mag., 3, 4-16.
-
(1986)
IEEE ASSP Mag.
, vol.3
, pp. 4-16
-
-
Rabiner, L.1
Juang, B.H.2
-
12
-
-
0015600423
-
The Viterbi algorithm
-
Forney,J.D.,Jr (1973) The Viterbi algorithm. Proc. IEEE, 61, 268-278.
-
(1973)
Proc. IEEE
, vol.61
, pp. 268-278
-
-
Forney Jr., J.D.1
-
13
-
-
13244265565
-
Efficient decoding algorithms for generalized hidden Markov model gene finders
-
Majoros,W.H., Pertea,M., Delcher,A.L. and Salzberg,S.L. (2005) Efficient decoding algorithms for generalized hidden Markov model gene finders. BMC Bioinformatics, 6, 16.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 16
-
-
Majoros, W.H.1
Pertea, M.2
Delcher, A.L.3
Salzberg, S.L.4
-
14
-
-
2942527473
-
Gene prediction with a hidden Markov model and a new intron submodel
-
Stanke,M. and Waack,S. (2003) Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics, 19, ii215-ii225.
-
(2003)
Bioinformatics
, vol.19
-
-
Stanke, M.1
Waack, S.2
-
15
-
-
8844252293
-
TigrScan and GlimmerHMM: Two open source ab initio eukaryotic gene-finders
-
Majoros,W.H., Pertea,M. and Salzberg,S.L. (2004) TigrScan and GlimmerHMM: Two open source ab initio eukaryotic gene-finders. Bioinformatics, 20, 2878-2879.
-
(2004)
Bioinformatics
, vol.20
, pp. 2878-2879
-
-
Majoros, W.H.1
Pertea, M.2
Salzberg, S.L.3
-
16
-
-
2942544417
-
Gene finding in novel genomes
-
Korf,I. (2004) Gene finding in novel genomes. BMC Bioinformatics, 5, 59.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 59
-
-
Korf, I.1
-
17
-
-
17444437765
-
Integrating genomic homology into gene structure prediction
-
Korf,I., Flicek,P., Duan,D. and Brent,M.R. (2001) Integrating genomic homology into gene structure prediction. Bioinformatics, 17, S140-S148.
-
(2001)
Bioinformatics
, vol.17
-
-
Korf, I.1
Flicek, P.2
Duan, D.3
Brent, M.R.4
-
18
-
-
0030585734
-
Evaluation of gene structure prediction programs
-
Burset,M. and Guigó,R. (1996) Evaluation of gene structure prediction programs. Genomics, 34, 353-367.
-
(1996)
Genomics
, vol.34
, pp. 353-367
-
-
Burset, M.1
Guigó, R.2
-
19
-
-
0035002807
-
Evaluation of gene-finding programs on mammalian sequences
-
Rogic,S., Mackworth,A.K. and Ouellette,F.B.F. (2001) Evaluation of gene-finding programs on mammalian sequences. Genome Res., 11, 817-832.
-
(2001)
Genome Res.
, vol.11
, pp. 817-832
-
-
Rogic, S.1
Mackworth, A.K.2
Ouellette, F.B.F.3
-
20
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schäffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
21
-
-
4644295707
-
EGPred: Prediction of eukaryotic genes using ab initio methods after combining with sequence similarity approaches
-
Issac,B. and Raghava,G.P.S. (2004) EGPred: Prediction of eukaryotic genes using ab initio methods after combining with sequence similarity approaches. Genome Res., 14, 1756-1766.
-
(2004)
Genome Res.
, vol.14
, pp. 1756-1766
-
-
Issac, B.1
Raghava, G.P.S.2
-
22
-
-
0030333286
-
A generalized hidden Markov model for the recognition of human genes in DNA
-
In States,D., Agarwal,P., Gaasterland,T., Hunter,L. and Smith,R. (eds), AAAI Press, Menlo Park, CA
-
Kulp,D., Haussler,D., Reese,M.G. and Eeckman,F.H. (1996) A generalized hidden Markov model for the recognition of human genes in DNA. In States,D., Agarwal,P., Gaasterland,T., Hunter,L. and Smith,R. (eds), Proceedings of the Fourth International Conference on Intelligent System for Molecular Biology. AAAI Press, Menlo Park, CA, pp. 134-142.
-
(1996)
Proceedings of the Fourth International Conference on Intelligent System for Molecular Biology
, pp. 134-142
-
-
Kulp, D.1
Haussler, D.2
Reese, M.G.3
Eeckman, F.H.4
-
23
-
-
0031027525
-
Identification of protein coding regions in the human genome by quadratic discriminant analysis
-
Zhang,M.Q. (1997) Identification of protein coding regions in the human genome by quadratic discriminant analysis. Proc. Natl Acad. Sci. USA, 94, 565-568.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 565-568
-
-
Zhang, M.Q.1
|