2D representation of protein secondary structure sequences and its applications

Journal of Computational Chemistry

Volumn 27, Issue 11, 2006, Pages 1119-1124

  Liu, Liwei ^a   Wang, Tianming ^a  

^a DALIAN UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

2D representation; Protein; Protein secondary structure sequences; Similarity

Indexed keywords

COMPUTATIONAL METHODS; MICROSTRUCTURE; MOLECULAR DYNAMICS;

2D REPRESENTATION; PROTEIN SECONDARY STRUCTURE SEQUENCES; SIMILARITY; STRUCTURAL CLASS;

PROTEINS;

PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CLASSIFICATION; COMPUTER SIMULATION; MOLECULAR GENETICS; PROTEIN SECONDARY STRUCTURE;

AMINO ACID SEQUENCE; COMPUTER SIMULATION; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY; PROTEINS;

EID: 33745910252     PISSN: 01928651     EISSN: 1096987X     Source Type: Journal    
DOI: 10.1002/jcc.20430     Document Type: Article

References (17)

1. Randic, M.; Vracko, M.; Lers, N.; Plavsic, D. Chem Phys Lett 2003, 368, 1.
2. Liao, B.; Wang, T. Chem Phys Lett 2004, 388, 195.
3. Randic, M.; Vracko, M.; Nandy, A.; Basak, S. C. J Chem Inf Comput Sci 2000, 40, 1235.
4. Nandy, A. Curr Sci 1994, 66, 309.
5. Nandy, A.; Nandy, P. Curr Sci 1995, 68, 75.
6. Nandy, A. Curr Sci 1996, 70, 661.
7. Guo, X. F.; Nandy, A. Chem Phys Lett 2003, 369, 361.
8. Zhang, R.; Zhang, C. J Biomol Struct Dyn 1994, 11, 767.
9. Lan, M. L.; Carpendale, M. S. T. Proceedings of the IEEE Conference on Visualization 1998, p. 440.
10. Randic, M.; Vracko, M.; Novic, M. In QSPR/QSAR Studies by Molecular Descriptors: Diudea, M. V., Ed., Nova Science: Huntington, NY, 2001, p. 145.
11. Hamori, E.; Ruskin, J. J Biol Chem 1983, 258, 1318.
12. Zhang, C.; Zhang, R. Biopolymers 2000, 53, 539.
13. Levitt, M.; Chothia, C. Nature 1976, 261, 552.
14. Rost, B.; Sander, C. J Mol Biol 1993, 232, 584.
15. Kneller, D. G.; Cohen, F. E.; Langridge, R. J Mol Biol 1990, 214, 171.
16. Lovasz, L.; Pelikan, J. I. Period Math Hung 1973, 3, 175.
17. Liao, B.; Wang, T. J Comput Chem 2004, 25, 1364.