메뉴 건너뛰기




Volumn 364, Issue 5, 2006, Pages 964-973

Mosaic Structure of Human Coronavirus NL63, One Thousand Years of Evolution

Author keywords

coronavirus; evolution; HCoV NL63; molecular clock; recombination

Indexed keywords

ARTICLE; CHILD; CORONAVIRUS; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC RECOMBINATION; GENOME; GENOME ANALYSIS; HUMAN; MOSAIC VIRUS; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; VIRUS MORPHOLOGY;

EID: 33751329741     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2006.09.074     Document Type: Article
Times cited : (142)

References (52)
  • 2
    • 0003208239 scopus 로고    scopus 로고
    • Coronaviridae and their replication
    • Howley P., Griffin D., Lamb R., Martin M., Roizman B., Straus S., and Knipe D. (Eds), Lippincott Williams and Wilkins, London
    • Lai M.M.C., and Holmes K.V. Coronaviridae and their replication. In: Howley P., Griffin D., Lamb R., Martin M., Roizman B., Straus S., and Knipe D. (Eds). Fields-Virology (2005), Lippincott Williams and Wilkins, London 1163-1185
    • (2005) Fields-Virology , pp. 1163-1185
    • Lai, M.M.C.1    Holmes, K.V.2
  • 3
    • 0028330820 scopus 로고
    • The Coronaviridae now comprises two genera, coronavirus and torovirus: report of the Coronaviridae Study Group
    • Cavanagh D., Brian D.A., Brinton M.A., Enjuanes L., Holmes K.V., Horzinek M.C., et al. The Coronaviridae now comprises two genera, coronavirus and torovirus: report of the Coronaviridae Study Group. Adv. Exp. Med. Biol. 342 (1993) 255-257
    • (1993) Adv. Exp. Med. Biol. , vol.342 , pp. 255-257
    • Cavanagh, D.1    Brian, D.A.2    Brinton, M.A.3    Enjuanes, L.4    Holmes, K.V.5    Horzinek, M.C.6
  • 5
    • 15744364706 scopus 로고    scopus 로고
    • Genome structure and transcriptional regulation of human coronavirus NL63
    • Pyrc K., Jebbink M.F., Berkhout B., and van der Hoek L. Genome structure and transcriptional regulation of human coronavirus NL63. Virol. J. 1 (2004) 7
    • (2004) Virol. J. , vol.1 , pp. 7
    • Pyrc, K.1    Jebbink, M.F.2    Berkhout, B.3    van der Hoek, L.4
  • 8
    • 12944314895 scopus 로고    scopus 로고
    • Detection of human coronavirus NL63 in young children with bronchiolitis
    • Ebihara T., Endo R., Ma X., Ishiguro N., and Kikuta H. Detection of human coronavirus NL63 in young children with bronchiolitis. J. Med. Virol. 75 (2005) 463-465
    • (2005) J. Med. Virol. , vol.75 , pp. 463-465
    • Ebihara, T.1    Endo, R.2    Ma, X.3    Ishiguro, N.4    Kikuta, H.5
  • 9
    • 20444365774 scopus 로고    scopus 로고
    • Human coronavirus NL63 infection and other coronavirus infections in children hospitalized with acute respiratory disease in Hong Kong
    • Chiu S.S., Chan K.H., Chu K.W., Kwan S.W., Guan Y., Poon L.L., and Peiris J.S. Human coronavirus NL63 infection and other coronavirus infections in children hospitalized with acute respiratory disease in Hong Kong. China. Clin. Infect. Dis. 40 (2005) 1721-1729
    • (2005) China. Clin. Infect. Dis. , vol.40 , pp. 1721-1729
    • Chiu, S.S.1    Chan, K.H.2    Chu, K.W.3    Kwan, S.W.4    Guan, Y.5    Poon, L.L.6    Peiris, J.S.7
  • 10
    • 12944327830 scopus 로고    scopus 로고
    • New human coronavirus, HCoV-NL63, associated with severe lower respiratory tract disease in Australia
    • Arden K.E., Nissen M.D., Sloots T.P., and Mackay I.M. New human coronavirus, HCoV-NL63, associated with severe lower respiratory tract disease in Australia. J. Med. Virol. 75 (2005) 455-462
    • (2005) J. Med. Virol. , vol.75 , pp. 455-462
    • Arden, K.E.1    Nissen, M.D.2    Sloots, T.P.3    Mackay, I.M.4
  • 12
    • 24344463447 scopus 로고    scopus 로고
    • Lack of association between New Haven coronavirus and Kawasaki disease
    • Ebihara T., Endo R., Ma X., Ishiguro N., and Kikuta H. Lack of association between New Haven coronavirus and Kawasaki disease. J. Infect. Dis. 192 (2005) 351-352
    • (2005) J. Infect. Dis. , vol.192 , pp. 351-352
    • Ebihara, T.1    Endo, R.2    Ma, X.3    Ishiguro, N.4    Kikuta, H.5
  • 13
    • 27744571257 scopus 로고    scopus 로고
    • Human coronavirus NL63 is not detected in the respiratory tracts of children with acute Kawasaki disease
    • Shimizu C., Shike H., Baker S.C., Garcia F., van der Hoek L., Kuijpers T.W., et al. Human coronavirus NL63 is not detected in the respiratory tracts of children with acute Kawasaki disease. J. Infect. Dis. 192 (2005) 1767-1771
    • (2005) J. Infect. Dis. , vol.192 , pp. 1767-1771
    • Shimizu, C.1    Shike, H.2    Baker, S.C.3    Garcia, F.4    van der Hoek, L.5    Kuijpers, T.W.6
  • 14
    • 84984549331 scopus 로고    scopus 로고
    • Lack of association between infection with a novel human coronavirus (HCoV), HCoV-NH, and Kawasaki disease in Taiwan
    • Chang L.Y., Chiang B.L., Kao C.L., Wu M.H., Chen P.J., Berkhout B., et al. Lack of association between infection with a novel human coronavirus (HCoV), HCoV-NH, and Kawasaki disease in Taiwan. J. Infect. Dis. 193 (2006) 283-286
    • (2006) J. Infect. Dis. , vol.193 , pp. 283-286
    • Chang, L.Y.1    Chiang, B.L.2    Kao, C.L.3    Wu, M.H.4    Chen, P.J.5    Berkhout, B.6
  • 16
    • 25444432585 scopus 로고    scopus 로고
    • A novel pancoronavirus RT-PCR assay: frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium
    • Moes E., Vijgen L., Keyaerts E., Zlateva K., Li S., Maes P., et al. A novel pancoronavirus RT-PCR assay: frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium. BMC Infect. Dis. 5 (2005) 6
    • (2005) BMC Infect. Dis. , vol.5 , pp. 6
    • Moes, E.1    Vijgen, L.2    Keyaerts, E.3    Zlateva, K.4    Li, S.5    Maes, P.6
  • 18
    • 0021679725 scopus 로고
    • Selection pressures on codon usage in the complete genome of bacteriophage T7
    • Sharp P.M., Rogers M.S., and McConnell D.J. Selection pressures on codon usage in the complete genome of bacteriophage T7. J. Mol. Evol. 21 (1984) 150-160
    • (1984) J. Mol. Evol. , vol.21 , pp. 150-160
    • Sharp, P.M.1    Rogers, M.S.2    McConnell, D.J.3
  • 19
    • 0042389536 scopus 로고    scopus 로고
    • Phylogenetic and evolutionary relationships among torovirus field variants: evidence for multiple intertypic recombination events
    • Smits S.L., Lavazza A., Matiz K., Horzinek M.C., Koopmans M.P., and de Groot R.J. Phylogenetic and evolutionary relationships among torovirus field variants: evidence for multiple intertypic recombination events. J. Virol. 77 (2003) 9567-9577
    • (2003) J. Virol. , vol.77 , pp. 9567-9577
    • Smits, S.L.1    Lavazza, A.2    Matiz, K.3    Horzinek, M.C.4    Koopmans, M.P.5    de Groot, R.J.6
  • 20
    • 0036021407 scopus 로고    scopus 로고
    • Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
    • Drummond A.J., Nicholls G.K., Rodrigo A.G., and Solomon W. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161 (2002) 1307-1320
    • (2002) Genetics , vol.161 , pp. 1307-1320
    • Drummond, A.J.1    Nicholls, G.K.2    Rodrigo, A.G.3    Solomon, W.4
  • 21
    • 43349095424 scopus 로고    scopus 로고
    • Using PEBBLE for the evolutionary analysis of serially sampled molecular sequences
    • Baxevanis A.D., Davison D.B., Page R.D.M., Petsko G.A., Stein L.D., and Stormo G.D. (Eds), John Wiley and Sons, Inc., New York
    • Goode M., and Rodrigo A.G. Using PEBBLE for the evolutionary analysis of serially sampled molecular sequences. In: Baxevanis A.D., Davison D.B., Page R.D.M., Petsko G.A., Stein L.D., and Stormo G.D. (Eds). Current Protocols in Bioinformatics (2004), John Wiley and Sons, Inc., New York 6.8.1-6.8.26
    • (2004) Current Protocols in Bioinformatics
    • Goode, M.1    Rodrigo, A.G.2
  • 22
    • 0034944642 scopus 로고    scopus 로고
    • The inference of stepwise changes in substitution rates using serial sequence samples
    • Drummond A., Forsberg R., and Rodrigo A.G. The inference of stepwise changes in substitution rates using serial sequence samples. Mol. Biol. Evol. 18 (2001) 1365-1371
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1365-1371
    • Drummond, A.1    Forsberg, R.2    Rodrigo, A.G.3
  • 23
    • 0033637538 scopus 로고    scopus 로고
    • Reconstructing genealogies of serial samples under the assumption of a molecular clock using serial-sample UPGMA
    • Drummond A., and Rodrigo A.G. Reconstructing genealogies of serial samples under the assumption of a molecular clock using serial-sample UPGMA. Mol. Biol.Evol. 17 (2000) 1807-1815
    • (2000) Mol. Biol.Evol. , vol.17 , pp. 1807-1815
    • Drummond, A.1    Rodrigo, A.G.2
  • 25
    • 0022633650 scopus 로고
    • High-frequency RNA recombination of murine coronaviruses
    • Makino S., Keck J.G., Stohlman S.A., and Lai M.M. High-frequency RNA recombination of murine coronaviruses. J. Virol. 57 (1986) 729-737
    • (1986) J. Virol. , vol.57 , pp. 729-737
    • Makino, S.1    Keck, J.G.2    Stohlman, S.A.3    Lai, M.M.4
  • 26
    • 0021883345 scopus 로고
    • Characterization of leader-related small RNAs in coronavirus-infected cells: further evidence for leader-primed mechanism of transcription
    • Baric R.S., Stohlman S.A., Razavi M.K., and Lai M.M. Characterization of leader-related small RNAs in coronavirus-infected cells: further evidence for leader-primed mechanism of transcription. Virus Res. 3 (1985) 19-33
    • (1985) Virus Res. , vol.3 , pp. 19-33
    • Baric, R.S.1    Stohlman, S.A.2    Razavi, M.K.3    Lai, M.M.4
  • 28
    • 0028880390 scopus 로고
    • Experimental evidence of recombination in coronavirus infectious bronchitis virus
    • Kottier S.A., Cavanagh D., and Britton P. Experimental evidence of recombination in coronavirus infectious bronchitis virus. Virology 213 (1995) 569-580
    • (1995) Virology , vol.213 , pp. 569-580
    • Kottier, S.A.1    Cavanagh, D.2    Britton, P.3
  • 29
    • 0029108556 scopus 로고
    • A novel variant of avian infectious bronchitis virus resulting from recombination among three different strains
    • Jia W., Karaca K., Parrish C.R., and Naqi S.A. A novel variant of avian infectious bronchitis virus resulting from recombination among three different strains. Arch. Virol. 140 (1995) 259-271
    • (1995) Arch. Virol. , vol.140 , pp. 259-271
    • Jia, W.1    Karaca, K.2    Parrish, C.R.3    Naqi, S.A.4
  • 30
    • 0025670178 scopus 로고
    • Sequence evidence for RNA recombination in field isolates of avian coronavirus infectious bronchitis virus
    • Kusters J.G., Jager E.J., Niesters H.G., and van der Zeijst B.A. Sequence evidence for RNA recombination in field isolates of avian coronavirus infectious bronchitis virus. Vaccine 8 (1990) 605-608
    • (1990) Vaccine , vol.8 , pp. 605-608
    • Kusters, J.G.1    Jager, E.J.2    Niesters, H.G.3    van der Zeijst, B.A.4
  • 31
    • 0027268695 scopus 로고
    • Evidence of natural recombination within the S1 gene of infectious bronchitis virus
    • Wang L., Junker D., and Collisson E.W. Evidence of natural recombination within the S1 gene of infectious bronchitis virus. Virology 192 (1993) 710-716
    • (1993) Virology , vol.192 , pp. 710-716
    • Wang, L.1    Junker, D.2    Collisson, E.W.3
  • 32
    • 0031958109 scopus 로고    scopus 로고
    • Feline coronavirus type II strains 79-1683 and 79-1146 originate from a double recombination between feline coronavirus type I and canine coronavirus
    • Herrewegh A.A., Smeenk I., Horzinek M.C., Rottier P.J., and de Groot R.J. Feline coronavirus type II strains 79-1683 and 79-1146 originate from a double recombination between feline coronavirus type I and canine coronavirus. J .Virol. 72 (1998) 4508-4514
    • (1998) J .Virol. , vol.72 , pp. 4508-4514
    • Herrewegh, A.A.1    Smeenk, I.2    Horzinek, M.C.3    Rottier, P.J.4    de Groot, R.J.5
  • 33
    • 28044467101 scopus 로고    scopus 로고
    • Human coronavirus NL63 associated with lower respiratory tract symptoms in early life
    • Kaiser L., Regamey N., Roiha H., Deffernez C., and Frey U. Human coronavirus NL63 associated with lower respiratory tract symptoms in early life. Pediatr. Infect. Dis. J. 24 (2005) 1015-1017
    • (2005) Pediatr. Infect. Dis. J. , vol.24 , pp. 1015-1017
    • Kaiser, L.1    Regamey, N.2    Roiha, H.3    Deffernez, C.4    Frey, U.5
  • 37
    • 0029112439 scopus 로고
    • Membrane protein molecules of transmissible gastroenteritis coronavirus also expose the carboxy-terminal region on the external surface of the virion
    • Risco C., Anton I.M., Sune C., Pedregosa A.M., Martin-Alonso J.M., Parra F., et al. Membrane protein molecules of transmissible gastroenteritis coronavirus also expose the carboxy-terminal region on the external surface of the virion. J. Virol. 69 (1995) 5269-5277
    • (1995) J. Virol. , vol.69 , pp. 5269-5277
    • Risco, C.1    Anton, I.M.2    Sune, C.3    Pedregosa, A.M.4    Martin-Alonso, J.M.5    Parra, F.6
  • 38
    • 0026788417 scopus 로고
    • Genetic evolution and tropism of transmissible gastroenteritis coronaviruses
    • Sanchez C.M., Gebauer F., Sune C., Mendez A., Dopazo J., and Enjuanes L. Genetic evolution and tropism of transmissible gastroenteritis coronaviruses. Virology 190 (1992) 92-105
    • (1992) Virology , vol.190 , pp. 92-105
    • Sanchez, C.M.1    Gebauer, F.2    Sune, C.3    Mendez, A.4    Dopazo, J.5    Enjuanes, L.6
  • 39
    • 13944270196 scopus 로고    scopus 로고
    • Genetic variability of human respiratory coronavirus OC43
    • Vijgen L., Lemey P., Keyaerts E., and Van Ranst M. Genetic variability of human respiratory coronavirus OC43. J .Virol. 79 (2005) 3223-3224
    • (2005) J .Virol. , vol.79 , pp. 3223-3224
    • Vijgen, L.1    Lemey, P.2    Keyaerts, E.3    Van Ranst, M.4
  • 41
    • 13744252665 scopus 로고    scopus 로고
    • Complete genomic sequence of human coronavirus OC43: molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event
    • Vijgen L., Keyaerts E., Moes E., Thoelen I., Wollants E., Lemey P., et al. Complete genomic sequence of human coronavirus OC43: molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event. J .Virol. 79 (2005) 1595-1604
    • (2005) J .Virol. , vol.79 , pp. 1595-1604
    • Vijgen, L.1    Keyaerts, E.2    Moes, E.3    Thoelen, I.4    Wollants, E.5    Lemey, P.6
  • 42
    • 33745802348 scopus 로고    scopus 로고
    • Evolutionary history of the closely related group 2 coronaviruses: porcine hemagglutinating encephalomyelitis virus, bovine coronavirus, and human coronavirus OC43
    • Vijgen L., Keyaerts E., Lemey P., Maes P., Van Reeth K., Nauwynck H., et al. Evolutionary history of the closely related group 2 coronaviruses: porcine hemagglutinating encephalomyelitis virus, bovine coronavirus, and human coronavirus OC43. J. Virol. 80 (2006) 7270-7274
    • (2006) J. Virol. , vol.80 , pp. 7270-7274
    • Vijgen, L.1    Keyaerts, E.2    Lemey, P.3    Maes, P.4    Van Reeth, K.5    Nauwynck, H.6
  • 43
    • 19944427959 scopus 로고    scopus 로고
    • Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia
    • Woo P.C., Lau S.K., Chu C.M., Chan K.H., Tsoi H.W., Huang Y., et al. Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia. J. Virol. 79 (2005) 884-895
    • (2005) J. Virol. , vol.79 , pp. 884-895
    • Woo, P.C.1    Lau, S.K.2    Chu, C.M.3    Chan, K.H.4    Tsoi, H.W.5    Huang, Y.6
  • 44
    • 33745782272 scopus 로고    scopus 로고
    • Comparative analysis of 22 coronavirus HKU1 genomes reveals a novel genotype and evidence of natural recombination in coronavirus HKU1
    • Woo P.C., Lau S.K., Yip C.C., Huang Y., Tsoi H.W., Chan K.H., and Yuen K.Y. Comparative analysis of 22 coronavirus HKU1 genomes reveals a novel genotype and evidence of natural recombination in coronavirus HKU1. J. Virol. 80 (2006) 7136-7145
    • (2006) J. Virol. , vol.80 , pp. 7136-7145
    • Woo, P.C.1    Lau, S.K.2    Yip, C.C.3    Huang, Y.4    Tsoi, H.W.5    Chan, K.H.6    Yuen, K.Y.7
  • 45
    • 24944485104 scopus 로고    scopus 로고
    • Mutagenesis of the murine hepatitis virus nsp1-coding region identifies residues important for protein processing, viral RNA synthesis, and viral replication
    • Brockway S.M., and Denison M.R. Mutagenesis of the murine hepatitis virus nsp1-coding region identifies residues important for protein processing, viral RNA synthesis, and viral replication. Virology 340 (2005) 209-223
    • (2005) Virology , vol.340 , pp. 209-223
    • Brockway, S.M.1    Denison, M.R.2
  • 46
    • 27144500667 scopus 로고    scopus 로고
    • The nsp2 replicase proteins of murine hepatitis virus and severe acute respiratory syndrome coronavirus are dispensable for viral replication
    • Graham R.L., Sims A.C., Brockway S.M., Baric R.S., and Denison M.R. The nsp2 replicase proteins of murine hepatitis virus and severe acute respiratory syndrome coronavirus are dispensable for viral replication. J. Virol. 79 (2005) 13399-13411
    • (2005) J. Virol. , vol.79 , pp. 13399-13411
    • Graham, R.L.1    Sims, A.C.2    Brockway, S.M.3    Baric, R.S.4    Denison, M.R.5
  • 47
    • 0032989122 scopus 로고    scopus 로고
    • Colocalization and membrane association of murine hepatitis virus gene 1 products and de novo-synthesized viral RNA in infected cells
    • Shi S.T., Schiller J.J., Kanjanahaluethai A., Baker S.C., Oh J.W., and Lai M.M. Colocalization and membrane association of murine hepatitis virus gene 1 products and de novo-synthesized viral RNA in infected cells. J. Virol. 73 (1999) 5957-5969
    • (1999) J. Virol. , vol.73 , pp. 5957-5969
    • Shi, S.T.1    Schiller, J.J.2    Kanjanahaluethai, A.3    Baker, S.C.4    Oh, J.W.5    Lai, M.M.6
  • 48
    • 0035852649 scopus 로고    scopus 로고
    • A zinc finger-containing papain-like protease couples sub-genomic mRNA synthesis to genome translation in a positive-stranded RNA virus
    • Tijms M.A., van Dinten L.C., Gorbalenya A.E., and Snijder E.J. A zinc finger-containing papain-like protease couples sub-genomic mRNA synthesis to genome translation in a positive-stranded RNA virus. Proc. Natl Acad. Sci. USA 98 (2001) 1889-1894
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 1889-1894
    • Tijms, M.A.1    van Dinten, L.C.2    Gorbalenya, A.E.3    Snijder, E.J.4
  • 49
    • 20344383258 scopus 로고    scopus 로고
    • Human coronavirus NL63 employs the severe acute respiratory syndrome coronavirus receptor for cellular entry
    • Hofmann H., Pyrc K., van der Hoek L., Geier M., Berkhout B., and Pohlmann S. Human coronavirus NL63 employs the severe acute respiratory syndrome coronavirus receptor for cellular entry. Proc. Natl Acad. Sci. USA 102 (2005) 7988-7993
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 7988-7993
    • Hofmann, H.1    Pyrc, K.2    van der Hoek, L.3    Geier, M.4    Berkhout, B.5    Pohlmann, S.6
  • 50
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., et al. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73 (1999) 152-160
    • (1999) J. Virol. , vol.73 , pp. 152-160
    • Lole, K.S.1    Bollinger, R.C.2    Paranjape, R.S.3    Gadkari, D.4    Kulkarni, S.S.5    Novak, N.G.6
  • 51
    • 0030683599 scopus 로고    scopus 로고
    • PAML: a program package for phylogenetic analysis by maximum likelihood
    • Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. BioSci. 13 (1997) 555-556
    • (1997) Comput. Appl. BioSci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 52
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • Nielsen R., and Yang Z. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148 (1998) 929-936
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.