Burkholderia soli sp. nov., isolated from soil cultivated with Korean ginseng

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 1, 2007, Pages 122-125

  Yoo, Seung Hee ^a   Kim, Byung Yong ^a   Weon, Hang Yeon ^b   Kwon, Soon Wo ^a   Go, Seung Joo ^a   Stackebrandt, Erko ^c  

^a National Institute of Agricultural Science   (South Korea)

^b National Institute of Animal Science   (South Korea)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; RNA 16S; SODIUM CHLORIDE;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BURKHOLDERIA; BURKHOLDERIA CARYOPHYLLI; BURKHOLDERIA PHENAZINIUM; BURKHOLDERIA SOLI; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENUS; GINSENG; GRAM NEGATIVE BACTERIUM; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SOIL; TAXONOMY;

AGRICULTURE; BACTERIAL TYPING TECHNIQUES; BURKHOLDERIA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; KOREA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PANAX; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

BURKHOLDERIA; BURKHOLDERIA CARYOPHYLLI; BURKHOLDERIA PHENAZINIUM; NEGIBACTERIA; PANAX GINSENG;

EID: 33846550751     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64471-0     Document Type: Article

References (12)

1. Coenye, T. & Vandamme, P. (2003). Diversity an significance of Burkholderia species occupying diverse ecological niches. Environ Microbiol 5, 719-729.
2. Friedrich, M., Grosser, R. J., Kern, E. A., Inskeep, W. P. & Ward, D. M. (2000). Effect of model sorptive phases on phenanthrene biodegradation: molecular analysis of enrichments and solates suggests selection based on bioavailability. Appl Environ Microbiol 66, 2703-2710.
3. Kimura, M. (1980). A simple method for estimati for evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
4. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
5. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
6. Sasser, M. (1990). Identification of Bacteria by Gas chromatography of Cellular Fatty Acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
7. Schoenborn, L., Yates, P. S., Grinton, B. E., Hugenholtz, P. & Janssen, P. H. (2004). Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteria. Appl Environ Microbiol 70, 4363-4366.
8. Smeldin, L. & Dubnau, D. (1985). Deoxyribonucleic: acid homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotojixans, and other nitrogen-fixing Bacillus strains. Int J Syst Bacteriol 35, 151-154.
9. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited Sy P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
10. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
11. Weon, H.-Y., Kim, B.-Y., Kwon, S.-W., ParK I.-C., Cha, I.-B., Tindall, B. J., Stackebrandt, E., Trüper, H. G. & Go, S.-J. (2005). Leadbetterella byssophila gen. nov., sp. nov., isolated from cotton- waste composts for the cultivation of oyster mushroom. Int J Syst Evol Microbial 55, 2297-2302.
12. Yabuuchi, E., Kosako, Y., Oyaizu, H., Yano, L, Hotta, H., Hashimoto, Y., Ezaki, T. & Arakawa, M. (1992). Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol Immunol 36, 1251-1275.