Leadbetterella byssophila gen. nov., sp. nov., isolated from cotton-waste composts for the cultivation of oyster mushroom

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 6, 2005, Pages 2297-2302

  Weon, Hang Yeon ^a   Kim, Byung Yong ^b   Kwon, Soon Wo ^b   Park, In Cheol ^b   Cha, In Bae ^b   Tindall, Brian J ^c   Stackebrandt, Erko ^c   Trüper, Hans G ^d   Go, Seung Joo ^b  

^a National Institute of Animal Science   (South Korea)

^b National Institute of Agricultural Science   (South Korea)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^d UNIVERSITY OF BONN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CATALASE; CYTOSINE; ESCULIN; FATTY ACID; GELATIN; GUANINE; MENAQUINONE; OXIDOREDUCTASE; RNA 16S; STARCH; TYROSINE;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BACTEROIDES; CONTROLLED STUDY; COTTON; CULTURE MEDIUM; CYTOPHAGA; DNA CONTENT; FLAVOBACTERIUM; GRAM NEGATIVE BACTERIUM; HYDROLYSIS; LEADBETTERELLA BYSSOPHILA; LIPID COMPOSITION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PLEUROTUS OSTREATUS; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOUTH KOREA; STRAIN DIFFERENCE;

ANIMALS; DNA, BACTERIAL; DNA, RIBOSOMAL; FLEXIBACTERACEAE; GOSSYPIUM; INDUSTRIAL WASTE; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLEUROTUS; RNA, RIBOSOMAL, 16S;

BACTERIA (MICROORGANISMS); BACTEROIDES; BACTEROIDETES; BASIDIOMYCOTA; CYTOPHAGA; FLAVOBACTERIUM; FLEXIBACTERACEAE; GOSSYPIUM HIRSUTUM; NEGIBACTERIA; PLEUROTUS OSTREATUS;

EID: 27844474316     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63741-0     Document Type: Article

References (36)

1. Bowman, J. P., Nichols, C. M. & Gibson, J. A. E. (2003). Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53, 1343-1355.
2. Brettar, I., Christen, R. & Höfle, M. G. (2004a). Aquiflexum balticum gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 54, 2335-2341.
3. Brettar, I., Christen, R. & Höfle, M. G. (2004b). Belliella baltica gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 54, 65-70.
4. Breznak, J. A. & Costilow, R. N. (1994). Physicochemical factors in growth. In Methods for General and Molecular Bacteriology, pp. 137-154. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
5. Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75, 4801-4805.
6. Chelius, M. K. & Triplett, E. W. (2000). Dyadobacter fermentans gen. nov., sp. nov., a novel Gram-negative bacterium isolated from surface-sterilized Zea mays stems. Int J Syst Evol Microbiol 50, 751-758.
7. Cottrell, M. T. & Kirchman, D. L. (2000). Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl Environ Microbiol 66, 5116-5122.
8. Donachie, S. P., Bowman, J. P. & Alam, M. (2004). Psychroflexus tropicus sp. nov., an obligately halophilic Cytophaga-Flavobacterium-Bacteroides group bacterium from an Hawaiian hypersaline lake. Int J Syst Evol Microbiol 54, 935-940.
9. Fautz, E. & Reichenbach, H. (1980). A simple test for flexirubin-type pigments. FEMS Microbiol Lett 8, 87-91.
10. Frette, L., Jørgensen, N. O. G., Irming, H. & Kroer, N. (2004). Tenacibaculum skagerrakense sp. nov., a marine bacterium isolated from the pelagic zone in Skagerrak, Denmark. Int J Syst Evol Microbiol 54, 519-524.
11. Glöckner, F. O., Fuchs, B. M. & Amann, R. (1999). Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65, 3721-3726.
12. Gregersen, T. (1978). Rapid method for distinction of gram-negative from gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5, 123-127.
13. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
14. Haack, S. K. & Breznak, J. A. (1993). Cytophaga xylanolytica sp. nov., a xylan-degrading, anaerobic gliding bacterium. Arch Microbiol 159, 6-15.
15. Hiraishi, A. (1992). Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification. Lett Appl Microbiol 15, 210-213.
16. Höfle, M. G. (1982). Glucose uptake of Cytophaga johnsonae studied in batch and chemostat culture. Arch Microbiol 133, 289-294.
17. Höfle, M. G. (1992). Bacterioplankton community structure and dynamics after large-scale release of nonindigenous bacteria as revealed by low-molecular-weight-RNA analysis. Appl Environ Microbiol 58, 3387-3394.
18. Hugh, R. & Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram-negative bacteria. J Bacteriol 66, 24-26.
19. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
20. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001). MEGA2: molecular evolutionary genetic analysis software. Bioinformatics 17, 1244-1245.
21. Kwon, S. W., Kim, J. S., Park, I. C., Yoon, S. H., Park, D. H., Lim, C. K. & Go, S. J. (2003). Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea. Int J Syst Evol Microbiol 53, 21-27.
22. Ludwig, W. & Klenk, H.-P. (2001). Overview: a phylogenetic backbone and taxonomic framework for procaryotic systematics. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 49-65. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
23. MacFaddin, J. F. (2000). Urease test. In Biochemical Tests for Identification of Medical Bacteria, 3rd edn, pp. 424-438. Baltimore: Lippincott Williams & Wilkins.
24. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
25. Nedashkovskaya, O. I., Suzuki, M., Vysotskii, M. V. & Mikhailov, V. V. (2003). Reichenbachia agariperforans gen. nov., sp. nov., a novel marine bacterium in the phylum Cytophaga-Flavobacterium-Bacteroides. Int J Syst Evol Microbiol 53, 81-85.
26. Nedashkovskaya, O. I., Vancanneyt, M., Van Trappen, S. & 7 other authors (2004). Description of Algoriphagus aquimarinus sp. nov., Algoriphagus chordae sp. nov. and Algoriphagus winogradskyi sp. nov., from sea water and algae, transfer of Hongiella halophila Yi and Chun 2004 to the genus Algoriphagus as Algoriphagus halophilus comb. nov. and emended descriptions of the genera Algoriphagus Bowman et al. 2003 and Hongiella Yi and Chun 2004. Int J Syst Evol Microbiol 54, 1757-1764.
27. Pinhassi, J., Azam, F., Hemphälä, J., Long, R. A., Martinez, J., Zweifel, U. L. & Hagström, Å. (1999). Coupling between bacterioplankton species composition, population dynamics, and organic matter degradation. Aquat Microb Ecol 17, 13-26.
28. Raj, H. D. & Maloy, S. R. (1990). Proposal of Cyclobacterium marinus gen. nov., comb. nov. for a marine bacterium previously assigned to the genus Flectobacillus. Int J Syst Bacteriol 40, 337-347.
29. Reddy, G. S. N. & Garcia-Pichel, F. (2005). Dyadobacter crusticola sp. nov., from biological soil crusts in the Colorado Plateau, USA, and an emended description of the genus Dyadobacter Chelius and Triplett 2000. Int J Syst Evol Microbiol 55, 1295-1299.
30. AL. In Bergey's Manual of Systematic Bacteriology, vol. 3, pp. 2011-2082. Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt. Baltimore: Williams & Wilkins.
31. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
32. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-655. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
33. Van Trappen, S., Vandecandelaere, I., Mergaert, J. & Swings, J. (2004). Algoriphagus antarcticus sp. nov., a novel psychrophile from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 54, 1969-1973.
34. Yi, H. & Chun, J. (2004). Hongiella mannitolivorans gen. nov., sp. nov., Hongiella halophila sp. nov. and Hongiella ornithinivorans sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 54, 157-162.
35. Yoon, J.-H., Yeo, S.-H. & Oh, T.-K. (2004). Hongiella marincola sp. nov., isolated from sea water of the East Sea in Korea. Int J Syst Evol Microbiol 54, 1845-1848.
36. Yoon, J.-H., Kang, S.-J., Jung, S.-Y., Lee, C.-H. & Oh, T.-K. (2005). Algoriphagus yeomjeoni sp. nov., isolated from a marine solar saltern in the Yellow Sea, Korea. Int J Syst Evol Microbiol 55, 865-870.