Molecular typing and presence of genetic markers among strains of banana finger-tip rot pathogen, Burkholderia cenocepacia, in Taiwan

Phytopathology

Volumn 97, Issue 2, 2007, Pages 195-201

  Lee, Yung An ^a   Chan, Chih Wen ^a  

^a FU JEN CATHOLIC UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ALLIUM CEPA; BACTERIA (MICROORGANISMS); BURKHOLDERIA CENOCEPACIA;

EID: 33846521668     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-97-2-0195     Document Type: Article

References (35)

1. Agodi, A., Mahenthiralingam, E., Barchitta, M., Giannino, V., Sciacca, A., and Stefani, S. 2001. Burkholderia cepacia complex infection in Italian patients with cystic fibrosis: Prevalence, epidemiology, and genomovar status. J. Clin. Microbiol. 39:2891-2896.
2. Balandreau, J., Viallard, V., Cournoyer, B., and Coenye, T. 2001. Burkholderia cepacia genomovar III is a common plant-associated bacterium. Appl. Environ. Microbiol. 67:982-985.
3. Bevivino, A., Dalmastri, C., Tabacchioni, S., Chiarini, L., Belli, M. L., Piana, S., Materazzo, A., Vandamme, P., and Manno, G. 2002. Burkholderia cepacia complex bacteria from clinical and environmental sources in Italy: Genomovar status and distribution of traits related to virulence and transmissibility. J. Clin. Microbiol. 40:846-851.
4. Butler, S. L., Doherty, C. J., Hughes, J. E., Nelson, J. W., and Govan, J. R. W. 1995. Burkholderia cepacia and cystic fibrosis: Do natural environments present a potential hazard? J. Clin. Microbiol. 33:1001-1004.
5. Coenye, T., Mahenthiralingam, E., Henry, D., LiPuma, J. J., Laevens, S., Gillis, M., Speert, D. P., and Vandamme, P. 2001. Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis-related isolates. Int. J. Syst. Evol. Microbiol. 51:1481-1490.
6. Felsenstein, J. 1989. Phylip-phylogeny inference package (version 3.2). Cladistics 5:164-166.
7. Goldstein, R., Sun, L., Jiang, R.-Z., Sajjan, U. S., Forstner, J. F., and Campanelli, C. 1995. Structurally variant classes of pilus appendage fibers coexpressed from Burkholderia (Pseudomonas) cepacia. J. Bacteriol. 177:1039-1052.
8. Govan, J. R. W., and Deretic, V. 1996. Microbial pathogenesis in cystic fibrosis: Mucoid Pseudomonas aerugionosa and Burkholderia cepacia. Microbiol. Rev. 60:539-574.
9. Govan, J. R. W., Hughes, J. E., and Vandamme, P. 1996. Burkholderia cepacia: Medical, taxonomic and ecological issues. J. Med. Microbiol. 45:395-407.
10. Lee, Y.-A., Chan, C.-W., Shiao, Y.-Y., and Chao, C.-P. 2004. Determination of genomovar status of Burkholderia cepacia that causes banana finger-tip rot and development of a simple semi-selective medium for the isolation of the pathogen. Plant Pathol. Bull. (Taiwan) 13:177-184.
11. Lee, Y.-A., Shiao, Y.-Y., and Chao, C.-P. 2003. First report of Burkholderia cepacia as a pathogen of banana finger-tip rot in Taiwan. Plant Dis. 87:601.
12. LiPuma, J. J. 1998. Burkholderia cepacia-management issues and new insights. Clin. Chest Med. 19:473-486.
13. LiPuma, J. J., Spilker, T., Gill, L. H., Campbell, P. W., III, Liu, L., and Mahenthiralingam, E. 2001. Disproportionate distribution of Burkholderia cepacia complex species and transmissibility markers in cystic fibrosis. Am. J. Respir. Crit. Care Med. 164:92-96.
14. Mahenthiralingam, E., Baldwin, A., and Vandamme, P. 2002. Burkholderia cepacia complex infection in patients with cystic fibrosis. J. Med. Microbiol. 51:533-538.
15. Mahenthiralingam, E., Bischof, J., Byrne, S. K., Radomski, C., Davies, J. E., Av-Gay, Y., and Vandamme, P. 2000. DNA-based diagnostic approaches for identification of Burkholderia cepacia complex, Burkholderia vietnamiensis, Burkholderia multivorans, Burkholderia stabilis, and Burkholderia cepacia genomovars I and III. J. Clin. Microbiol. 38:3165-3173.
16. Mahenthiralingam, E., Coenye, T., Chung, J. W., Speert, D. P., Govan, J. R., Taylor, P., and Vandamme, P. 2000. Diagnostically and experimentally useful panel of strains from the Burkholderia cepacia complex. J. Clin. Microbiol. 38:910-913.
17. Mahenthiralingam, E., Simpson, D. A., and Speert, D. P. 1997. Identification and characterization of a novel DNA marker associated with epidemic Burkholderia cepacia strains recovered from patients with cystic fibrosis. J. Clin. Microbiol. 35:808-816.
18. Parsons, Y. N., Glendinning, K. J., Thornton, V., Hales, B. A., Hart, C. A., and Winstanley, C. 2001. A putative type III secretion gene cluster is widely distributed in the Burkholderia cepacia complex but absent from genomovar I. FEMS Microbiol. Lett. 203:103-108.
19. Ribot E. M., Fitzgerald, C., Kubota, K., Swaminathan, B., and Barrett, T. J. 2001. Rapid pulsed-field gel electrophoresis protocol for subtyping of Campylobacter jejuni. J. Clin. Microbiol. 39:1889-1894.
20. Saitou, N., and Nei, M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
21. Sajjan, U. S., Sun, L., Goldstein, R., and Forstner, J. F. 1995. Cable (Cbl) type II pili of cystic fibrosis-associated Burkholderia (Pseudomonas) cepacia: Nucleotide sequence of the cblA major subunit pilin gene and novel morphology of the assembled appendage fibers. J. Bacteriol. 177:1030-1038.
22. Sajjan, U. S., Sylvester, F. A., and Forstner, J. F. 2000. Cable-piliated Burkholderia cepacia binds to cytokeratin 13 of epithelial cells. Infect. Immun. 68:1787-1795.
23. Sambrook, J., Fritsch, E. F., and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual. 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
24. Schaad, N. W., Jones, J. B., and Chun, W. 2001. Laboratory Guide for Identification of Plant Pathogenic Bacteria, 3rd ed. The American Phytopathological Society, St. Paul, MN.
25. Smith, D. L., Gumery, L. B., Smith, E. G., Stableforth, D. E., Kaufmann, M. E., and Pitt, T. L. 1993. Epidemic of Pseudomonas cepacia in an adult cystic fibrosis unit: Evidence of person-to-person transmission. J. Clin. Microbiol. 31:3017-3022.
26. Speert, D. P., Bond, M., Woodman, R. C., and Curnutte, J. T. 1994. Infection with Pseudomonas cepacia in chronic granulomatous disease: Role of nonoxidative killing by neutrophils in host defence. J. Infect. Dis. 170:1524-1531.
27. Steinbach, S., Sun, L., Jiang, R., Flume, P., Gilligan, P., Egan, T. M., and Goldstein, R. 1994. Transmissibility of Pseudomonas cepacia infection in clinic patients and lung-transplant recipients with cystic fibrosis. N. Engl. J. Med. 331:981-987.
28. Sun, L., Jiang, R. Z., Steinbach, S., Holmes, A., Campanelli, C., Forstner, J., Tan, Y., Riley, M., and Goldstein, R. 1995. The emergence of a highly transmissible lineage of cbl1 Pseudomonas (Burkholderia) cepacia causing CF centre epidemics in North America and Britain. Nat. Med. 1:661-666.
29. Thompson, J. D., Higgins, D. G., and Gibson, T. J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
30. Tyler, S. D., Rozee, K. R., and Johnson, W. M. 1996. Identification of IS1356, a new insertion sequence, and its association with IS402 in epidemic strains of Burkholderia cepacia infecting cystic fibrosis patients. J. Clin. Microbiol. 34:1610-1616.
31. Vandamme, P., Henry, D., Coenye, T., Nzula, S., Vancanneyt, M., LiPuma. J. J., Speert, D. P., Govan, J. R., and Mahenthiralingam, E. 2002. Burkholderia anthina sp. nov. and Burkholderia pyrrocinia. two additional Burkholderia cepacia complex bacteria, may confound results of new molecular diagnostic tools. FEMS Immunol. Med. Microbiol. 33:143-149.
32. Vandamme, P., Holmes, B., Coenye, T., Goris, J., Mahenthiralingam, E., LiPuma, J. J., and Govan, J. R. 2003. Burkholderia cenocepacia sp. nov.-A new twist to an old story. Res. Microbiol. 154:91-96.
33. Vandamme, P., Holmes, B., Vancanneyt, M., Coenye, T., Hoste, B., Coopman, R., Revets, H., Lauwers, S., Gillis, M., Kersters, K., and Gowan, J. R. 1997. Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp. nov. Int. J. Syst. Bacteriol. 47:1188-1200.
34. Vandamme, P., Mahenthiralingam, E., Holmes, B., Coenye, T., Hoste, B., De Vos, P., Henry, D., and Speert, D. P. 2000. Identification and population structure of Burkholderia stabilis sp. nov. (formerly Burkholderia cepacia genomovar IV). J. Clin. Microbiol. 38:1042-1047.
35. Vermis, K., Coenye, T., LiPuma, J. J., Mahenthiralingam, E., Nelis, H. J., and Vandamme, P. 2004. Identification of Burkholderia dolosa sp. nov. (formerly Burkholderia cepacia genomovar VI). Int. J. Syst. Evol. Microbiol. 54:689-691.