Identification and population structure of Burkholderia stabilis sp. nov. (formerly Burkholderia cepacia genomovar IV)

Journal of Clinical Microbiology

Volumn 38, Issue 3, 2000, Pages 1042-1047

  Vandamme, P ^a,d   Mahenthiralingam, E ^b,e   Holmes, B ^c   Coenye, T ^a   Hoste, B ^a   De Vos, P ^a   Henry, D ^b   Speert, D P ^b  

^a GHENT UNIVERSITY   (Belgium)

^b UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^c CENTRAL PUBLIC HEALTH LABORATORY   (United Kingdom)

^d GHENT UNIVERSITY   (Belgium)

^e CARDIFF UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; DNA;

ARTICLE; BACTERIAL GROWTH; BACTERIAL INFECTION; BURKHOLDERIA; BURKHOLDERIA CEPACIA; BURKHOLDERIA STABILIS; CYSTIC FIBROSIS; DNA SEQUENCE; GENETIC VARIABILITY; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; RESPIRATORY TRACT INFECTION; STRAIN DIFFERENCE;

BACTERIA (MICROORGANISMS); BURKHOLDERIA; BURKHOLDERIA CEPACIA; BURKHOLDERIA MULTIVORANS; BURKHOLDERIA STABILIS; BURKHOLDERIA VIETNAMIENSIS; NEGIBACTERIA;

EID: 0034087618     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/jcm.38.3.1042-1047.2000     Document Type: Article

References (26)

1. Barrow, G. I., and R. K. A. Feltham (ed.). 1993. Cowan and Steel's manual for the identification of medical bacteria, Cambridge University Press, Cambridge, United Kingdom.
2. Bauernfeind, A., I. Schneider, R. Jungwirth, and C. Roller. 1999. Discrimination of Burkholderia multivorans and Burkholderia vietnamiensis from Burkholderia cepacia genomovars I, III, and IV. J. Clin. Microbiol. 37:1335-1339.
3. Cheng, H.-P., and T. Lessie. 1994. Multiple replicons constituting the genome of Pseudomonas cepacia 17615. J. Bacteriol. 176:4034-4042.
4. Coenye, T., E. Falsen, M. Vancanneyt, B. Hoste, J. R. W. Govan, K. Kersters, and P. Vandamme. 1999. Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples: description of Ralstonia gilardii sp. nov. Int. J. Syst. Bacterial. 49:405-413.
5. Coenye, T., L. M. Schouls, J. R. W. Govan, K. Kersters, and P. Vandamme. 1999. Identification of Burkholderia species and genomovars from cystic fibrosis patients by AFLP fingerprinting. Int. J. Syst. Bacteriol. 49:1657-1666.
6. 2-fixing isolates from rice in Vietnam. Int. J. Syst. Bacteriol. 45:274-289.
7. Govan, J. R. W., J. Hughes, and P. Vandamme. 1996. Burkholderia cepacia: medical, taxonomic and ecological issues. J. Med. Microbiol. 45:395-407.
8. Henry, D. A., M. E. Campbell. J. J. LiPumi, and D. P. Speert. 1997. Identification of Burkholderia cepacia isolates from patients with cystic fibrosis and use of a simple new selective medium. J. Clin. Microbiol. 35:614-619.
9. Holmes, B., S. P. Lapage, and H. Malnick. 1975. Strains of Pseudomonas putrefaciens from clinical material. J. Clin. Pathol. 28:149-155.
10. Hugh, R., and E. Leifson. 1953. The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram-negative bacteria. J. Bacteriol. 66:24-26.
11. Johnson, W. M., S. D. Tyler, and K. R. Rozee. 1994. Linkage analysis of geographic and clinical clusters in Pseudomonas cepacia infections by multilocus enzyme electrophoresis and ribotyping. J. Clin. Microbiol. 32:924-930.
12. Lessie, T. G., W. Hendrickson, B. D. Manning, and R. Devereux. 1996. Genomic complexity and plasticity of Burkholderia cepacia. FEMS Microbiol. Lett. 144:117-128.
13. Mahenthiralingam, E., M. E. Campbell, D. A. Henry, and D. P. Speert. 1996. Epidemiology of Burkholderia cepacia infection in patients with cystic fibrosis: analysis by random amplified polymorphic DNA (RAPD) fingerprinting. J. Clin. Microbiol. 34:2914-2920.
14. Mahenthiralingam, E., D. A. Simpson, and D. P. Speert. 1997. Identification and characterization of a novel DNA marker associated with epidemic strains of Burkholderia cepacia recovered from patients with cystic fibrosis. J. Clin. Microbiol. 35:808-816.
15. Pitcher, D. G., N. A. Saunders, and R. J. Owen. 1989. Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol. 8:151-156.
16. Pot, B., P. Vandamme, and K. Kersters. 1994. Analysis of electrophoretic whole-organism protein fingerprinting, p. 493-521. In M. Goodfellow and A. G. O'Donnell (ed.), Modern microbial methods. Chemical methods in bacterial systematics. J. Wiley & Sons, Chichester, United Kingdom.
17. Rabkin, C. S., W. R. Jarvis, R. L. Anderson, J. R. W. Govan, J. Klinger, J. J. Lipuma, W. J. Martone, H. Monteil, C. Richard, S. Shigeta, A. Sosa, T. Stull, J. Swenson, and D. Woods. 1989, Pseudomonas cepacia typing systems: collaborative study to assess their potential in epidemiologic investigations. Rev. Infect. Dis. 11:600-607.
18. Rodley, P. D., U. Römling, and B. Tümmler. 1995. A physical map of the Burkholderia cepacia type strain. Mol. Microbiol. 17:57-67.
19. Samnrook, J., E. F. Fritsch, and T. Maniatis (ed.). 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
20. Segonds, C., E. Bingen, G. Couetdic, S. Mathy, N. Brahimi, N. Marty, P. Plesiat, Y. MichelBriand, and G. Chabanon. 1997. Genotypic analysis of Burkholderia cepacia isolates from 13 French cystic fibrosis centers. J. Clin. Microbiol. 35:2055-2060.
21. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
22. Ursing, J. B., R. A. Rossello-Mora, E. Garcia-Valdes, and J. Lalucat. 1995. Taxonomic note: a pragmatic approach to the nomenclature of phenotypically similar genomic groups. Int. J. Syst. Bacteriol. 45:604.
23. Vandamme, P., B. Holmes, M. Vancanneyt, T. Coenye, B. Hoste, R. Coopman, H. Revets, S. Lauwers, M. Gillis, K. Kersters, and J. R. W. Govan. 1997. Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp. nov, Int. J. Syst. Bacteriol. 47:1188-1200.
24. Vandamme, P., J. Goris, T. Coenye, B. Hoste, D. Janssens, K. Kersters, P. De Vos, and E. Falsen. 1999. Assignment of Centers for Disease Control group IVc-2 to the genus Ralstonia as Raktonia paucula sp. nov, Int. J. Syst. Bacteriol. 49:663-669.
25. Wise, M. G., L. J. Shimkets, and J. V. McArthur. 1995. Genetic structure of a totic population of Burkholderia (Pseudomonas) cepacia. Appl. Environ. Microbiol. 61:1791-198.
26. Yohalem, D. S., and J. W. Lorbeer. 1994. Multilocus isoenzyme diversity among strains of Pseudomonas cepacia isolated from decayed onions, soils, and clinical sources. Syst. Appl. Microbiol. 17:116-124.