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Volumn 3, Issue 3, 2006, Pages 109-119

Modulation of the self-assembled structure of biomolecules: Coarse grained molecular dynamics simulation

Author keywords

Biomolecules; Coarse grained modeling; Molecular dynamics simulation; Self assembly; Structure control

Indexed keywords

COMPUTER SIMULATION; COPOLYMERS; HYDROPHOBICITY; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; MOLECULAR STRUCTURE; MOLECULES; SELF ASSEMBLY;

EID: 33846419089     PISSN: 15565297     EISSN: 15565300     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (1)

References (26)
  • 1
    • 0034632952 scopus 로고    scopus 로고
    • Drug release characteristics of unimolecular polymeric micelles
    • Liu, H. B., Farrell, S., Uhrich, K. (2000) Drug release characteristics of unimolecular polymeric micelles, Journal of Controlled Release, 68, 167-174.
    • (2000) Journal of Controlled Release , vol.68 , pp. 167-174
    • Liu, H.B.1    Farrell, S.2    Uhrich, K.3
  • 2
    • 0032539538 scopus 로고    scopus 로고
    • Monomolecular collapse of plasmid DNA in stable virus-like particles
    • Blessing, T., Remy, J. S., Behr, J.P. (1998) Monomolecular collapse of plasmid DNA in stable virus-like particles, Proc. Natl. Acad. Sci. USA, 95, 1427-1431.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 1427-1431
    • Blessing, T.1    Remy, J.S.2    Behr, J.P.3
  • 3
    • 0035811011 scopus 로고    scopus 로고
    • Organic-inorganic nanocomposites with completely defined interfacial interactions
    • Laine, R. M., Choi, J. W., Lee, I. (2001) Organic-inorganic nanocomposites with completely defined interfacial interactions, Advanced Materials, 13, 800-803.
    • (2001) Advanced Materials , vol.13 , pp. 800-803
    • Laine, R.M.1    Choi, J.W.2    Lee, I.3
  • 4
    • 0037610831 scopus 로고    scopus 로고
    • Materials become insensitive to flaws at nanoscale: Lessons from nature
    • Gao, H., Ji, B., Jager, I. L., Arzt, E., Fratzl, P. (2003) Materials become insensitive to flaws at nanoscale: Lessons from nature, Proc. Natl. Acad. Sci. USA, 100, 5597-5600.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 5597-5600
    • Gao, H.1    Ji, B.2    Jager, I.L.3    Arzt, E.4    Fratzl, P.5
  • 5
    • 4143140028 scopus 로고    scopus 로고
    • Mechanical properties of nanostructure of biological materials
    • Ji, B., Gao, H. (2004) Mechanical properties of nanostructure of biological materials, J. Mech. Phys. Solids, 52, 1963-1990.
    • (2004) J. Mech. Phys. Solids , vol.52 , pp. 1963-1990
    • Ji, B.1    Gao, H.2
  • 6
    • 0026582243 scopus 로고
    • Inverse protein folding problem: Designing polymer sequences
    • Yue, K., Dill, K. A. (1992) Inverse protein folding problem: designing polymer sequences, Proc Natl Acad Sci USA., 89, 4163-4167.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 4163-4167
    • Yue, K.1    Dill, K.A.2
  • 7
    • 0027234766 scopus 로고
    • Engineering of stable and fast-folding sequences of model proteins
    • Shakhnovich, E. I., Gutin, A. M. (1993) Engineering of stable and fast-folding sequences of model proteins, Proc. Natl. Acad. Sci. USA, 90, 7195-7199.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 7195-7199
    • Shakhnovich, E.I.1    Gutin, A.M.2
  • 8
    • 0032614608 scopus 로고    scopus 로고
    • Conformation-dependent sequence design (engineering) of AB copolymers
    • Khokhlov, A. R., Khalatur, P. G. (1999) Conformation-dependent sequence design (engineering) of AB copolymers, Physical Review Letters, 82, 3456-3459.
    • (1999) Physical Review Letters , vol.82 , pp. 3456-3459
    • Khokhlov, A.R.1    Khalatur, P.G.2
  • 9
    • 0001237577 scopus 로고
    • Phase Transition Behavior of the Isolated Polymer Chain
    • Sanchez, I. C. (1979) Phase Transition Behavior of the Isolated Polymer Chain, Macromolecules, 12, 980-987.
    • (1979) Macromolecules , vol.12 , pp. 980-987
    • Sanchez, I.C.1
  • 11
    • 70349945221 scopus 로고
    • Irreversible Polymer Collapse In 2 And 3 Dimensions
    • Ostrovsky, B., Baryam, Y. (1994) Irreversible Polymer Collapse In 2 And 3 Dimensions, Europhysics Letters, 25, 409-414.
    • (1994) Europhysics Letters , vol.25 , pp. 409-414
    • Ostrovsky, B.1    Baryam, Y.2
  • 12
    • 0000247076 scopus 로고
    • Equilibrium properties of polymers from the Langevin equation: Gaussian self-consistent approach
    • Timoshenko, E. G., Dawson, K. A. (1995) Equilibrium properties of polymers from the Langevin equation: Gaussian self-consistent approach, Phys. Rev. E, 51, 492-498.
    • (1995) Phys. Rev. E , vol.51 , pp. 492-498
    • Timoshenko, E.G.1    Dawson, K.A.2
  • 13
    • 0001253041 scopus 로고
    • Kinetics At The Collapse Transition Gaussian Self-Consistent Approach
    • Timoshenko, E. G., Kuznetsov, Y. A., Dawson, K. A. (1995) Kinetics At The Collapse Transition Gaussian Self-Consistent Approach, Journal of Chemical Physics, 102, 1816-1823.
    • (1995) Journal of Chemical Physics , vol.102 , pp. 1816-1823
    • Timoshenko, E.G.1    Kuznetsov, Y.A.2    Dawson, K.A.3
  • 14
    • 0001383581 scopus 로고    scopus 로고
    • Kinetics of a homopolymer collapse: Beyond the Rouse-Zimm scaling
    • Klushin, L. I. (1998) Kinetics of a homopolymer collapse: Beyond the Rouse-Zimm scaling, Journal of Chemical Physics, 108, 7917-7920.
    • (1998) Journal of Chemical Physics , vol.108 , pp. 7917-7920
    • Klushin, L.I.1
  • 15
    • 0001176402 scopus 로고    scopus 로고
    • Early stages of homopolymer collapse
    • Halperin, A., Goldbart, P. M. (2000) Early stages of homopolymer collapse, Physical Review E, 61, 565-573.
    • (2000) Physical Review E , vol.61 , pp. 565-573
    • Halperin, A.1    Goldbart, P.M.2
  • 16
    • 36449008575 scopus 로고
    • Energy landscapes and the collapse dynamics of homopolymers
    • Chan, H. S., Dill, K. A. (1993) Energy landscapes and the collapse dynamics of homopolymers, Journal of Chemical Physics, 99, 2116-2127.
    • (1993) Journal of Chemical Physics , vol.99 , pp. 2116-2127
    • Chan, H.S.1    Dill, K.A.2
  • 17
    • 36449000646 scopus 로고
    • Transition-States And Folding Dynamics Of Proteins And Heteropolymers
    • Chan, H. S., Dill, K. A. (1994) Transition-States And Folding Dynamics Of Proteins And Heteropolymers, Journal of Chemical Physics, 100, 9238-9257.
    • (1994) Journal of Chemical Physics , vol.100 , pp. 9238-9257
    • Chan, H.S.1    Dill, K.A.2
  • 19
    • 0037154157 scopus 로고    scopus 로고
    • Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes
    • Cui, Y., Wong, W. H., Bornberg-Bauer, E., Chan, H. S. (2002) Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes, Proc. Natl. Acad. Sci. USA, 99, 809-814.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 809-814
    • Cui, Y.1    Wong, W.H.2    Bornberg-Bauer, E.3    Chan, H.S.4
  • 20
    • 11244312877 scopus 로고    scopus 로고
    • Comparing folding codes in simple heteropolymer models of protein evolutionary landscape: Robustness of the superfunnel paradigm
    • Wroe, R., Bornberg-Bauer, E., Chan, H. S. (2005) Comparing folding codes in simple heteropolymer models of protein evolutionary landscape: Robustness of the superfunnel paradigm, Biophysical Journal, 88, 118-131.
    • (2005) Biophysical Journal , vol.88 , pp. 118-131
    • Wroe, R.1    Bornberg-Bauer, E.2    Chan, H.S.3
  • 22
    • 0032638817 scopus 로고    scopus 로고
    • Strongly charged, flexible polyelectrolytes in poor solvents: Molecular dynamics simulations
    • Micka, U., Holm, C., Kremer, K. (1999) Strongly charged, flexible polyelectrolytes in poor solvents: Molecular dynamics simulations, Langmuir, 15, 4033-4044.
    • (1999) Langmuir , vol.15 , pp. 4033-4044
    • Micka, U.1    Holm, C.2    Kremer, K.3
  • 23
    • 0035366609 scopus 로고    scopus 로고
    • End effects of strongly charged polyelectrolytes: A molecular dynamics study
    • EsPResSo
    • Limbach, H. J., Holm, C. (2001) End effects of strongly charged polyelectrolytes: A molecular dynamics study, Journal of Chemical Physics, 114, 9674-9682; EsPResSo, http://www.espresso.mpg.de/.
    • (2001) Journal of Chemical Physics , vol.114 , pp. 9674-9682
    • Limbach, H.J.1    Holm, C.2
  • 24
    • 0000444218 scopus 로고    scopus 로고
    • Gaussian self-consistent method for the kinetics of heteropolymers: A direction in studying the protein folding problem
    • Timoshenko, E. G., Kuznetsov, Y. A., Dawson, K. A. (1996) Gaussian self-consistent method for the kinetics of heteropolymers: A direction in studying the protein folding problem, Phys. Rev. E, 53, 3886-3899.
    • (1996) Phys. Rev. E , vol.53 , pp. 3886-3899
    • Timoshenko, E.G.1    Kuznetsov, Y.A.2    Dawson, K.A.3
  • 25
    • 33846464296 scopus 로고    scopus 로고
    • Lectures on statistical physics and protein structure
    • Massachusetts Institute of Technology. Cambridge, MA USA, and Zhou Pei-Yuan Center for Applied Mathematics, Tsinghua University, Beijing, China
    • Huang, K. (2001) Lectures on statistical physics and protein structure., Massachusetts Institute of Technology. Cambridge, MA USA, and Zhou Pei-Yuan Center for Applied Mathematics, Tsinghua University, Beijing, China.
    • (2001)
    • Huang, K.1
  • 26
    • 0037465752 scopus 로고    scopus 로고
    • Collapse dynamics of block copolymers in selective solvents: Micelle formation and the effect of chain sequence
    • Cooke, I. R., Williams, D. R. M. (2003) Collapse dynamics of block copolymers in selective solvents: Micelle formation and the effect of chain sequence, Macromolecules, 36, 2149-2157.
    • (2003) Macromolecules , vol.36 , pp. 2149-2157
    • Cooke, I.R.1    Williams, D.R.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.