Separation of long DNA chains using a nonuniform electric field: A numerical study

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 75, Issue 1, 2007, Pages

  Nagahiro, Shin Ichiro ^a   Kawano, Satoyuki ^b   Kotera, Hidetoshi ^c  

^a SENDAI NATIONAL COLLEGE OF TECHNOLOGY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

^c KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; BROWNIAN MOVEMENT; COMPUTER SIMULATION; ELECTRIC FIELDS; MOLECULAR PHYSICS;

BEAD-SPRING CHAIN; BROWNIAN DYNAMICS; DNA MOLECULES; ELECTRIC TRAPS;

DNA;

EID: 33846355651     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.75.011902     Document Type: Article

References (22)

1. M. A. Burns, Science SCIEAS 0036-8075 10.1126/science.282.5388.484 282, 484 (1998).
2. S. J. Lee and S. Y. Lee, Appl. Microbiol. Biotechnol. AMBIDG 0175-7598 10.1007/s00253-003-1515-0 64, 289 (2004).
3. A. Ajdari and J. Prost, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.88.10.4468 88, 4468 (1991).
4. J. Han, S. W. Turner, and H. G. Craighead, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.83.1688 83, 1688 (1999).
5. J. Han and H. G. Craighead, Science SCIEAS 0036-8075 10.1126/science.288. 5468.1026 288, 1026 (2000).
6. J. Han and H. G. Craighead, Anal. Chem. ANCHAM 0003-2700 10.1021/ac0107002 74, 394 (2002).
7. O. Bakajin, T. A. J. Duke, J. Tegenfeldt, C.-F. Chou, S. S. Chan, R. H. Austin, and E. C. Cox, Anal. Chem. ANCHAM 0003-2700 10.1021/ac015527o 73, 6053 (2001).
8. D. Schmalzing, L. Koutny, A. Adourian, P. Belgraderdagger, P. Matsudaira, and D. Ehrlich, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.94.19.10273 94, 10273 (1997).
9. T. Sakaue, Eur. Phys. J. E EPJSFH 1292-8941 19, 477 (2006).
10. M. Streek, F. Schmid, T. T. Duong, and A. Ros, J. Biotechnol. JBITD4 0168-1656 10.1016/j.jbiotec.2004.04.021 112, 79 (2004).
11. P. Grassia and E. J. Hinch, J. Fluid Mech. JFLSA7 0022-1120 10.1017/S0022112096001474 308, 255 (1996).
12. F. Oosawa, J. Polym. Sci. JPSCAU 0022-3832 13, 421 (1957).
13. G. S. Manning, Q. Rev. Biophys. QURBAW 0033-5835 11, 179 (1978).
14. M. Streek, F. Schmid, T. T. Duong, D. Anselmetti, and A. Ros, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.71.011905 71, 011905 (2005).
15. R. L. Honeycutt, Phys. Rev. A PLRAAN 1050-2947 10.1103/PhysRevA.45.600 45, 600 (1992).
16. M. Matsumoto and Y. Nishimura, ACM Trans. Model. Comput. Simul. ATMCEZ 1049-3301 10.1145/272991.272995 8, 3 (1998).
17. P. J. Hagerman, Annu. Rev. Biophys. Biophys. Chem. ARBCEY 0883-9182 10.1146/annurev.bb.17.060188.001405 17, 265 (1988).
18. K. Yoshikawa, Y. Matsuzawa, K. Minagawa, M. Doi, and M. Matsumoto, Biochem. Biophys. Res. Commun. BBRCA9 0006-291X 10.1016/0006-291X(92)91369-2 188, 1274 (1992).
19. J. M. Deutsch, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.59. 1255 59, 1255 (1987).
20. H. Noguchi and M. Takasu, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1359481 114, 7260 (2001).
21. P.-G. de Gennes, Scaling Concepts in Polymer Physics (Cornell University Press, Ithaca, NY, 1979).
22. T. Sakaue and E. Raphaël, Macromolecules MAMOBX 0024-9297 10.1021/ma0514424 39, 2621 (2006).