Molecular and karyological aspects of Batoidea (Chondrichthyes, Elasmobranchi) phylogeny

Gene

Volumn 389, Issue 1, 2007, Pages 80-86

  Rocco, Lucia ^a   Liguori, Innocenza ^a   Costagliola, Domenico ^a   Morescalchi, Maria A ^a   Tinti, Fausto ^b   Stingo, Vincenzo ^a  

^a Department of Life Sciences ^*  (Italy)

^b Interdept Ctr Res Environ Sci   (Italy)

Author keywords

Chondrichthyes; Karyotype evolution; Molecular evolution; Ribosomal genes

Indexed keywords

CELL NUCLEUS DNA; MITOCHONDRIAL DNA;

ARTICLE; BAYES THEOREM; CONTROLLED STUDY; DIPLOIDY; DNA SEQUENCE; ELASMOBRANCHII; FISH; GENOME ANALYSIS; KARYOTYPE; MOLECULAR BIOLOGY; MOLECULAR GENETICS; MORPHOLOGICAL TRAIT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; TORPEDO;

ANIMALS; CHROMOSOME BANDING; CHROMOSOMES; ELASMOBRANCHII; KARYOTYPING; METAPHASE; PHYLOGENY;

BATOIDEA; CHONDRICHTHYES; MYLIOBATIFORMES; PISCES; RAJIFORMES; TORPEDINIFORMES;

EID: 33846250309     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2006.09.024     Document Type: Article

References (51)

1. Asahida T. Karyological studies on sharks, skates, and rays. Aquabiology 15 (1993) 32-40
2. Asahida T., Ida H., and Inoue S. Karyotypes of three rays in the order Myliobatiformes. Jpn. J. Ichthyol. 33 (1987) 426-430
3. Asahida T., Ida H., Terashima H., and Chang H.Y. The karyotype and cellular DNA content of a ray, Mobula japonica. Jpn. J. Ichthyol. 40 (1993) 317-322
4. Bernardi G., and Bernardi G. Compositional patterns in the nuclear genome of cold-blooded vertebrates. J. Mol. Evol. 31 (1990) 265-281
5. Bucciarelli G., Bernardi G., and Bernardi G. An ultracentrifugation analysis of two hundred fish genomes. Gene 295 (2002) 153-162
6. Compagno L.J.V. Interrelationships of living elasmobranchs. In: Greenwood P.H., Miles R.S., and Patterson C. (Eds). Interrelationships of Fishes (1973), Academic Press, New York 15-61
7. Compagno L.J.V. Phyletic relationships of living sharks and rays. Ann. Zool. 17 (1977) 303-322
8. Compagno L.J.V. Systematics and body form. In: Hamlett W.C. (Ed). Sharks, Skates and Rays (1999), Johns Hopkins University Press, Baltimore 1-42
9. De Carvalho M.R. Higher-level elasmobranch phylogeny, basal squalians, and paraphyly. In: Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds). Interrelationships of Fishes (1996), Academic Press, San Diego 35-62
10. Dean M.N., and Motta P.J. Anatomy and functional morphology of the feeding apparatus of the lesser electric ray, Narcine brasiliensis (Elasmobranchii: Batoidea). J. Morphol. 262 (2004) 462-483
11. Douady C.J., Dosay M., Shivji M.S., and Stanhope M.J. Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks. Mol. Phylogenet. Evol. 26 (2003) 215-221
12. Dunn K.A., and Morrisey J.F. Molecular phylogeny of elasmobranchs. Copeia 3 (1995) 526-531
13. Dunn K.A., McEachran J.D., and Honeycutt R.L. Molecular phylogenetics of myliobatiform fishes (Chondrichthyes: Myliobatiformes), with comments on the effects of missing data on parsimony and likelihood. Mol. Phylogenet. Evol. 27 (2003) 259-270
14. Faith D.P. Cladistic permutation tests for monophyly and nonmonophyly. Syst. Zool. 40 (1991) 366-375
15. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
16. Heemstra P.C., and Smith M.M. Hexatrygonidae a new family of stingrays (Myliobatiformes: Batoidea) from South Africa, with comments on the classification of batoid fishes. Ichthyol. Bull. J.L.B. Smith Inst. Ichthyol. 43 (1980) 1-17
17. Huelsenbeck J.P., and Ronquist F.R. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17 (2001) 754-755
18. Kishino H., and Hasegawa M. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data. J. Mol. Evol. 29 (1989) 170-179
19. Kocher T.D., et al. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. U. S. A. 86 (1989) 6196-6200
20. Lawson R., Burch S.J., Oughterson S.M., Heath S., and Davies D.H. Evolutionary relationships of cartilaginous fishes: an immunological study. J. Zool. 237 (1995) 101-106
21. Levan A., Fredga K., and Sandberg A.A. Nomenclature for centromeric position on chromosome. Hereditas 52 (1964) 201-220
22. Lloyd M.A., and Thorgard G.H. Restriction endonuclease banding of rainbow trout chromosomes. Chromosoma 96 (1988) 171-177
23. Maisey J.G. Higher elasmobranch phylogeny and biostratigraphy. Zool. J. Linn. Soc. 82 (1984) 33-54
24. McEachran J.D., and Dunn K.A. Phylogenetic analysis of skates, a morphologically conservative clade of elasmobranchs (Chondrichthyes: Rajidae). Copeia 2 (1998) 271-290
25. McEachran J.D., Dunn K.A., and Miyake T. Interrelationships of the batoid fishes (Chondrichthyes: Batoidei). In: Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds). Interrelationships of Fishes (1996), Academic Press, San Diego 63-84
26. n telomeric sequence in vertebrate chromosomes. Chromosoma 99 (1990) 3-10
27. Nanda I., Schneider-Rasp S., Winking H., and Schmid M. Loss of telomeric sites in the chromosomes of Mus musculus domesticus (Rodentia, Muridae) during Robertsonian rearrangements. Chromosome Res. 3 (1995) 399-409
28. Nei M. Molecular Evolutionary Genetics (1987), Columbia University Press, New York
29. Nelson, J.S., 1994. Fishes of the world. In: John Wiley & Sons, Inc. (Eds.), New York. Chondrichthyes, pp. 37-65.
30. Nishida K. Phylogeny of the suborder Myliobatidoidei. Mem. Fac. Fish., Hokkaido Univ. 37 (1990) 1-108
31. Olmo E., Stingo V., Cobror O., Capriglione T., and Odierna G. Repetitive DNA and polyploidy in selachians. Comp. Biochem. Physiol., B 73 (1982) 739-745
32. Peach M.B., and Rouse G.W. Phylogenetic trends in the abundance and distribution of pit organs of elasmobranches. Acta Zool. 85 (2004) 233-244
33. Rocco, L., 2006. Chromosome markers in cartilaginous fish cytogenetics. In: Pisano, E., Ozouf-Costaz, C., Foresti, Kapoor, B.G. (Eds.), Fish Cytogenetics. Science Publisher Inc., USA, pp. 473-490.
34. n telomeric sequence in selachian chromosomes. Heredity 87 (2001) 583-588
35. Rocco L., Morescalchi M.A., Costagliola D., and Stingo V. Karyotype and genome characterization in four cartilaginous fishes. Gene 295 (2002) 289-298
36. Rocco L., Costagliola D., Fiorillo M., Tinti F., and Stingo V. Molecular and chromosomal analysis of ribosomal cistrons in two cartilaginous fish, Taenuria lymma and Raja montagui (Chondrichtyes, Batoidea). Genetica 123 (2005) 245-253
37. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: a Laboratory Manual (1989), Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
38. Schwartz F.J., and Maddock M.B. Comparisons of karyotypes and cellular DNA contents within and between major lines of elasmobranch. In: Uyeno T., Arai R., Tuniuchi T., and Matsuura K. (Eds). Indo-Pacific Fish Biology Ichthyological (1986), Society Japan, Tokyo 148
39. Schwartz F.J., and Maddock M.B. Cytogenetics of the elasmobranchs: genome evolution and phylogenetic implications. Mar. Freshw. Res. 53 (2002) 491-502
40. Shirai S. Phylogenetic relationships of angel sharks, with comments on elasmobranch phylogeny (Chondrichthyes: Squatinidae). Copeia 2 (1992) 505-518
41. Shirai S. Squalean Phylogeny: a New Framework of "Squaloid" Sharks and Related Taxa (1992), Hokkaido University Press, Sapporo
42. Shirai S. Phylogenetic interrelationships of neoselachians (Chondrichthyes, Euselachii). In: Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds). Interrelationships of Fishes (1996), Academic Press, San Diego 9-34
43. Stingo V. Cariologia di due torpedini italiane. Boll. Zool. 43 (1976) 406-407
44. Stingo V. New developments in vertebrate citotaxonomy. II. The chromosomes of the cartilaginous fishes. Genetica 50 (1979) 227-239
45. Stingo V., and Capriglione T. DNA and chromosomal evolution in cartilaginous fish. In: Ueno T., Arai R., Taniuchi T., and Matsuura K. (Eds). Indo-Pacific Fish Biology (1986), Ichthyological Society Japan, Tokyo 140-147
46. Stingo V., and Rocco L. Chondrichthyan cytogenetics: a comparison with Teleosteans. J. Mol. Evol. 33 (1991) 76-82
47. Stingo V., and Rocco L. Selachian cytogenetics: a review. Genetica 111 (2001) 329-347
48. Stingo V., Rocco L., and Improta R. Chromosome marker and karyology of Selachians. J. Exp. Zool. 2 (1989) 175-185
49. Stingo V., Rocco L., Odierna G., and Bellitti M. NOR and heterochromatin analysis in two cartilaginous fishes by C-, Ag- and RE (restriction endonuclease)-banding. Cytogenet. Cell Genet. 71 (1995) 228-234
50. Swofford D.L. Phylogenetic Analysis Using Parsimony (PAUP) (1998), Sinauer Associates, Sunderland, MA
51. Winchell C.J., Martin A.P., and Mallatt J. Phylogeny of elasmobranchs based on LSU and SSU ribosomal RNA genes. Mol. Phylogenet. Evol. 31 (2004) 214-224