Replication system of plasmid pMTH4 of Paracoccus methylutens DM12 contains an enhancer

Polish Journal of Microbiology

Volumn 55, Issue 4, 2006, Pages 261-270

  Szymanik, Michał ^a,b   Welc Falȩciak, Renata ^a   Bartosik, Dariusz ^a   Włodarczyk, Mirosława ^a  

^a UNIVERSITY OF WARSAW   (Poland)

^b Adamed Sp z oo ^*  (Poland)

Author keywords

Enhancer; Iteron; Paracoccus methylutens; Plasmid replication

Indexed keywords

REPLICATION PROTEIN A;

ARTICLE; BACTERIAL STRAIN; CLONING VECTOR; CONTROLLED STUDY; DNA REPLICATION; DNA SEQUENCE; GENE MUTATION; GENETIC ORGANIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PARACOCCUS; PLASMID; PLASMID PMTH4; PROMOTER REGION; REPLICON;

AMINO ACID SEQUENCE; BASE SEQUENCE; DNA PRIMERS; DNA REPLICATION; ENHANCER ELEMENTS (GENETICS); GENE EXPRESSION REGULATION, BACTERIAL; GENE ORDER; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PARACOCCUS; PLASMIDS; POLYMERASE CHAIN REACTION; REPLICATION ORIGIN;

ALPHAPROTEOBACTERIA; PARACOCCUS METHYLUTENS;

EID: 33846147648     PISSN: 17331331     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (32)

1. Baj J., E. Piechucka, D. Bartosik and M. Wlodarczyk. 2000. Plasmid occurrence and diversity in the genus Paracoccus. Acta Microbiol. Pol. 49: 265-270.
2. Bartosik D., A. Bialkowska, J. Baj and M. Wlodarczyk. 1997. Construction of mobilizable cloning vectors derived from pBGS18 and their application for analysis of replicator region of a pTAV202 mini-derivative of Paracoccus versutus pTAV1 plasmid. Acta Microbiol. Pol. 46: 387-392.
3. Bartosik D., M. Witkowska, J. Baj and M. Wlodarczyk. 2001. Characterization and sequence analysis of the replicator region of the novel plasmid pALC1 from Paracoccus alcaliphilus. Plasmid 45: 222-226.
4. Bartosik D., J. Baj, A.A. Bartosik and M. Wlodarczyk. 2002. Characterisation of the replicator region of megaplasmid pTAV3 of Paracoccus versutus and search for plasmid-encoded traits. Microbiology 148: 871-881.
5. Bruand C., E. Le Chatelier, S.D. Ehrlich and L. Janniere. 1993. A fourth class of theta-replicating plasmids: the pAM1 family from Gram-positive bacteria. Proc. Natl. Acad. Sci. USA 90: 11668-11672.
6. Chattoraj D.K. 2000. Control of plasmid DNA replication by iterons: no longer paradoxical. Mol. Microbiol. 37: 467-476.
7. del Solar G., R. Giraldo, M.J. Ruiz-Echevarria, M. Espinosa and R. Diaz-Orejas. 1998. Replication and control of circular bacterial plasmids. Microbiol. Mol. Biol. Rev. 62: 434-464.
8. Ditta G., S. Stanfield, D. Corbin and D.R. Helinski. 1980. Broad host-range DNA cloning system for Gram-negative bacteria: construction of a bank of Rhizobium meliloti. Proc. Natl. Acad. Sci. USA 77: 7347-7351.
9. Doronina N.V., Y.A. Trotsenko, V.I. Krausova and N.E. Suzina. 1998. Paracoccus methylutens sp. nov. - a new aerobic facultatively methylotrophic bacterium utilizing dichloromethane. Syst. Appl. Microbiol. 21: 230-236.
10. Hanahan D. 1983. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166: 557-580.
11. Keen N.T., S. Tamaki, D. Kobayashi and D. Trollinger. 1988. Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria. Gene 70: 191-197.
12. Kelley W.L., I. Patel and D. Bastia. 1992. Structural and functional analysis of a replication enhancer: separation of the enhancer activity from origin function by mutational dissection of the replication origin γ of plasmid R6K. Proc. Natl. Acad. Sci. USA 89: 5078-5082.
13. Kruger R., S.A. Rakowski and M. Filutowicz. 2004. Participating elements in the replication of iteron-containing plasmids, pp. 25-45. In: B.E. Funnell and G.J. Phillips (eds), Plasmid Biology, ASM Press, Washington, D.C.
14. Kushner S.R. 1978. An improved method for transformation of E. coli with ColE1-derived plasmids. pp. 17-23. In: H.B. Boyer and S. Nicosia (eds), Genetic Engineering, Elsevier/North-Holland, Amsterdam.
15. Lu Y.B., H.J. Datta and D. Bastia. 1998. Mechanistic studies of initiator-initiator interaction and replication initiation. EMBO J. 17: 5192-5200.
16. Marx C.J. and M.E. Lidstrom. 2001. Development of improved versatile broad-host-range vectors for use in methylotrophs and other Gram-negative bacteria. Microbiology 147: 2065-2075.
17. Meijer W.J.J., A.J. de Boer, S. van Tongeren, G. Venema and S. Bron. 1995. Characterization of the replication region of the Bacillus subtilis plasmid pLS20: a novel type of replicon. Nucleic Acids Res. 23: 3214-3223.
18. Messer W., F. Blaesing, D. Jakimowicz, M. Krause, J. Majka, J. Nardmann, S. Schaper, H. Seitz, C. Speck, C. Weigel, G. Wegrzyn, M. Welzeck and J. Zakrzewska-Czerwinska. 2001. Bacterial replication initiator DnaA. Rules for DnaA binding and roles of DnaA in origin unwinding and helicase loading. Biochimie 83: 5-12.
19. Miller J.H. 1972. Experiments in Molecular Genetics. Cold Spring Harbor, New York.
20. Miller C.A. and S.N. Cohen. 1993. The partition (par) locus of pSC101 is an enhancer of plasmid incompatibility. Mol. Microbiol. 9: 695-702.
21. Ohkubo S. and K. Yamaguchi. 1995. Two enhancer elements for DNA replication of pSC101, par and a palindromic binding sequence of the Rep protein. J. Bacteriol. 177: 558-565.
22. Reece K.S. and G.J. Phillips. 1995. New plasmids carrying antibiotic-resistance cassettes. Gene 165: 141-142.
23. Sambrook J. and D.W. Russell. 2001. Molecular Cloning. A Laboratory Manual. Cold Spring Harbor, New York.
24. Schagger H. and G. von Jagow. 1987. Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal. Biochem. 166: 368-379.
25. Sozhamannan S. and D.K. Chattoraj. 1993. Heat shock proteins DnaJ, DnaK, and GrpE stimulate P1 plasmid replication by promoting initiator binding to the origin. J. Bacteriol. 175: 3546-3555.
26. Spratt B.G., P.J. Hedge, S. te Heesen, A. Edelman and J.K. Broome-Smith. 1986. Kanamycin-resistant vectors that are analogues of plasmids pUC8, pUC9, pEMBL8 and pEMBL9. Gene 41: 337-342.
27. Sugiura S., S. Ohkubo and K. Yamaguchi. 1993. Minimal essential origin of plasmid pSC101 replication: requirement of a region downstream of iterons. J. Bacteriol. 175: 5993-6001.
28. Szymanik M., D. Bartosik and M. Wlodarczyk. 2004. Genetic organization of the basic replicon of plasmid pMTH4 of a facultatively methylotrophic bacterium Paracoccus methylutens DM12. Curr. Microbiol. 48: 291-294.
29. Szymanik M. 2006. Ph.D. Thesis. Warsaw University, Warsaw. van Belkum M.J. and M.E. Stiles. 2006. Characterization of the theta-type plasmid pCD3.4 from Carnobacterium divergens, and modulation of its host range by RepA mutation. Microbiology 152: 171-178.
30. Wlodarczyk M., E.K. Jagusztyn-Krynicka, D. Bartosik and I. Kalinowska. 1994. Electroporation of Thiobacillus versutus with plasmid DNA. Acta Microbiol. Pol. 43: 223-227.
31. Wu F., I. Levchenko and M. Filutowicz. 1994. Binding of DnaA protein to a replication enhancer counteracts the inhibition of plasmid R6K γ origin replication mediated by elevated levels of R6K π protein. J. Bacteriol. 176: 6795-6801.
32. Zhong Z., R. Caspi, D. Helinski, V. Knauf, S. Sykes, C. O'Byrne, T.P. Shea, J.E. Wilkinson, C. DeLoughery and A. Toukdarian. 2003. Nucleotide sequence based characterizations of two cryptic plasmids from the marine bacterium Ruegeria isolate PR1b. Plasmid 49: 233-252.