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Volumn 2, Issue 12, 2006, Pages 1530-1542

Detecting statistically significant common insertion sites in retroviral insertional mutagenesis screens

Author keywords

[No Author keywords available]

Indexed keywords

DIAGNOSIS; GENES; MUTAGENESIS; TUMORS;

EID: 33846025793     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.0020166     Document Type: Article
Times cited : (107)

References (23)
  • 1
    • 27944496521 scopus 로고    scopus 로고
    • Retroviral insertional mutagenesis: Past, present and future
    • doi:10.1038/sj.onc.1209043
    • Uren AG, Kool J, Berns A, van Lohuizen M (2005) Retroviral insertional mutagenesis: Past, present and future. Oncogene 24: 7656-7672. doi:10.1038/sj.onc.1209043.
    • (2005) Oncogene , vol.24 , pp. 7656-7672
    • Uren, A.G.1    Kool, J.2    Berns, A.3    van Lohuizen, M.4
  • 2
    • 0037235453 scopus 로고    scopus 로고
    • Retroviral insertional mutagenesis: Tagging cancer pathways
    • Mikkers H, Berns A (2003) Retroviral insertional mutagenesis: Tagging cancer pathways. Adv Cancer Res 88: 53-99.
    • (2003) Adv Cancer Res , vol.88 , pp. 53-99
    • Mikkers, H.1    Berns, A.2
  • 3
    • 0032726951 scopus 로고    scopus 로고
    • Leukaemia disease genes: Large-scale cloning and pathway predictions
    • doi:10.1038/15531
    • Li J, Shen H, Himmel KL, Dupuy AJ, Largaespada DA, et al. (1999) Leukaemia disease genes: Large-scale cloning and pathway predictions. Nat Genet 23: 348-353. doi:10.1038/15531.
    • (1999) Nat Genet , vol.23 , pp. 348-353
    • Li, J.1    Shen, H.2    Himmel, K.L.3    Dupuy, A.J.4    Largaespada, D.A.5
  • 4
    • 0034051494 scopus 로고    scopus 로고
    • Genetic profile of insertion mutations in mouse leukemias and lymphomas
    • Hansen GM, Skapura D, Justice MJ (2000) Genetic profile of insertion mutations in mouse leukemias and lymphomas. Genome Res 10: 237-243.
    • (2000) Genome Res , vol.10 , pp. 237-243
    • Hansen, G.M.1    Skapura, D.2    Justice, M.J.3
  • 5
    • 0037143726 scopus 로고    scopus 로고
    • Identification of oncogenes collaborating with p27Kip1 loss by insertional mutagenesis and high-throughput insertion site analysis
    • doi:10.1073/pnas.162356099
    • Hwang HC, Martins CP, Bronkhorst Y, Randel E, Berns A, et al. (2002) Identification of oncogenes collaborating with p27Kip1 loss by insertional mutagenesis and high-throughput insertion site analysis. Proc Natl Acad Sci U S A 99: 11293-11298. doi:10.1073/pnas.162356099.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 11293-11298
    • Hwang, H.C.1    Martins, C.P.2    Bronkhorst, Y.3    Randel, E.4    Berns, A.5
  • 6
    • 18644380020 scopus 로고    scopus 로고
    • Large-scale identification of novel potential disease loci in mouse leukemia applying an improved strategy for cloning common virus integration sites
    • doi:10.1038/sj.onc.1205813
    • Joosten M, Vankan-Berkhoudt Y, Tas M, Lunghi M, Jenniskens Y, et al. (2002) Large-scale identification of novel potential disease loci in mouse leukemia applying an improved strategy for cloning common virus integration sites. Oncogene 21: 7247-7255. doi:10.1038/sj.onc.1205813.
    • (2002) Oncogene , vol.21 , pp. 7247-7255
    • Joosten, M.1    Vankan-Berkhoudt, Y.2    Tas, M.3    Lunghi, M.4    Jenniskens, Y.5
  • 7
    • 0036725322 scopus 로고    scopus 로고
    • Genome-wide retroviral insertional tagging of genes involved in cancer in Cdkn2a-deficient mice
    • doi:10.1038/ng956
    • Lund AH, Turner G, Trubetskoy A, Verhoeven E, Wientjens E, et al. (2002) Genome-wide retroviral insertional tagging of genes involved in cancer in Cdkn2a-deficient mice. Nat Genet 32: 160-165. doi:10.1038/ng956.
    • (2002) Nat Genet , vol.32 , pp. 160-165
    • Lund, A.H.1    Turner, G.2    Trubetskoy, A.3    Verhoeven, E.4    Wientjens, E.5
  • 8
    • 0036729878 scopus 로고    scopus 로고
    • High-throughput retroviral tagging to identify components of specific signaling pathways in cancer
    • doi:10.1038/ng950
    • Mikkers H, Allen J, Knipscheer P, Romeijn L, Hart A, et al. (2002) High-throughput retroviral tagging to identify components of specific signaling pathways in cancer. Nat Genet 32: 153-159. doi:10.1038/ng950.
    • (2002) Nat Genet , vol.32 , pp. 153-159
    • Mikkers, H.1    Allen, J.2    Knipscheer, P.3    Romeijn, L.4    Hart, A.5
  • 9
    • 0036725051 scopus 로고    scopus 로고
    • New genes involved in cancer identified by retroviral tagging
    • doi:10.1038/ng949
    • Suzuki T, Shen H, Akagi K, Morse HC, Malley JD, et al. (2002) New genes involved in cancer identified by retroviral tagging. Nat Genet 32: 166-174. doi:10.1038/ng949.
    • (2002) Nat Genet , vol.32 , pp. 166-174
    • Suzuki, T.1    Shen, H.2    Akagi, K.3    Morse, H.C.4    Malley, J.D.5
  • 10
    • 3843115428 scopus 로고    scopus 로고
    • Identification of candidate cancer-causing genes in mouse brain tumors by retroviral tagging
    • doi:10.1073/pnas.0402716101
    • Johansson FK, Brodd J, Eklöf C, Ferletta M, Hesselager G, et al. (2004) Identification of candidate cancer-causing genes in mouse brain tumors by retroviral tagging. Proc Natl Acad Sci U S A 101: 11334-11337. doi:10.1073/pnas.0402716101.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 11334-11337
    • Johansson, F.K.1    Brodd, J.2    Eklöf, C.3    Ferletta, M.4    Hesselager, G.5
  • 12
    • 10644278704 scopus 로고    scopus 로고
    • Analysis of wildtype and mutant SL3-3 murine leukemia virus insertions in the c-myc promoter during lymphomagenesis reveals target site hot spots, virusdependent patterns, and frequent error-prone gap repair
    • doi:10.1128/JVI.79.1.67-78.2005
    • Nielsen AA, Sørensen AB, Schmidt J, Pedersen FS (2005) Analysis of wildtype and mutant SL3-3 murine leukemia virus insertions in the c-myc promoter during lymphomagenesis reveals target site hot spots, virusdependent patterns, and frequent error-prone gap repair. J Virol 79: 67-78. doi:10.1128/JVI.79.1.67-78.2005.
    • (2005) J Virol , vol.79 , pp. 67-78
    • Nielsen, A.A.1    Sørensen, A.B.2    Schmidt, J.3    Pedersen, F.S.4
  • 13
    • 20044396722 scopus 로고    scopus 로고
    • Distinct genomic integration of MLV and SIV vectors in primate hematopoietic stem and progenitor cells
    • doi:10.1371/journal.pbio.0020423
    • Hematti P, Hong BK, Ferguson C, Adler R, Hanawa H, et al. (2004) Distinct genomic integration of MLV and SIV vectors in primate hematopoietic stem and progenitor cells. PLoS Biol 2 (12): e423. doi:10.1371/journal.pbio.0020423.
    • (2004) PLoS Biol , vol.2 , Issue.12
    • Hematti, P.1    Hong, B.K.2    Ferguson, C.3    Adler, R.4    Hanawa, H.5
  • 14
    • 19344375031 scopus 로고    scopus 로고
    • Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences
    • doi:10.1371/journal.pbio.0020234
    • Mitchell RS, Beitzel BF, Schroder ARW, Shinn P, Chen H, et al. (2004) Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences. PLoS Biol 2 (8): e234. doi:10.1371/journal.pbio.0020234.
    • (2004) PLoS Biol , vol.2 , Issue.8
    • Mitchell, R.S.1    Beitzel, B.F.2    Schroder, A.R.W.3    Shinn, P.4    Chen, H.5
  • 15
    • 0037841763 scopus 로고    scopus 로고
    • Transcription start regions in the human genome are favored targets for MLV integration
    • doi:10.1126/science.1083413
    • Wu X, Li Y, Crise B, Burgess SM (2003) Transcription start regions in the human genome are favored targets for MLV integration. Science 300: 1749-1751. doi:10.1126/science.1083413.
    • (2003) Science , vol.300 , pp. 1749-1751
    • Wu, X.1    Li, Y.2    Crise, B.3    Burgess, S.M.4
  • 16
    • 30044442930 scopus 로고    scopus 로고
    • Redefining the common insertion site
    • doi:10.1016/j.virol.2005.08.047
    • Wu X, Luke BT, Burgess SM (2006) Redefining the common insertion site. Virology 344: 292-295. doi:10.1016/j.virol.2005.08.047.
    • (2006) Virology , vol.344 , pp. 292-295
    • Wu, X.1    Luke, B.T.2    Burgess, S.M.3
  • 17
    • 27544512127 scopus 로고    scopus 로고
    • Hopping around the tumor genome: Transposons for cancer gene discovery
    • doi:10.1158/0008-5472.CAN-05-3085
    • Collier LS, Largaespada DA (2005) Hopping around the tumor genome: Transposons for cancer gene discovery. Cancer Res 65: 9607-9610. doi:10.1158/0008-5472.CAN-05-3085.
    • (2005) Cancer Res , vol.65 , pp. 9607-9610
    • Collier, L.S.1    Largaespada, D.A.2
  • 18
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cdna microarray experiments
    • Dudoit S, Yang YH, Callow MJ (2002) Statistical methods for identifying differentially expressed genes in replicated cdna microarray experiments. Statistica Sinica 12: 111-139.
    • (2002) Statistica Sinica , vol.12 , pp. 111-139
    • Dudoit, S.1    Yang, Y.H.2    Callow, M.J.3
  • 20
    • 33748276243 scopus 로고    scopus 로고
    • STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments
    • doi:10.1101/gr. 5076506
    • Diskin SJ, Eck T, Greshock J, Mosse YP, Naylor T, et al. (2006) STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments. Genome Res 16: 1149-1158. doi:10.1101/gr. 5076506.
    • (2006) Genome Res , vol.16 , pp. 1149-1158
    • Diskin, S.J.1    Eck, T.2    Greshock, J.3    Mosse, Y.P.4    Naylor, T.5
  • 21
    • 0001473437 scopus 로고
    • On estimation of a probability density function and mode
    • Parzen E (1962) On estimation of a probability density function and mode. Ann Math Stat 33: 1065-1076.
    • (1962) Ann Math Stat , vol.33 , pp. 1065-1076
    • Parzen, E.1
  • 22
    • 0028990259 scopus 로고
    • Splinkerettes-improved vectorettes for greater efficiency in PCR walking
    • Devon RS, Porteous DJ, Brookes AJ (1995) Splinkerettes-improved vectorettes for greater efficiency in PCR walking. Nucleic Acids Res 23: 1644-1645.
    • (1995) Nucleic Acids Res , vol.23 , pp. 1644-1645
    • Devon, R.S.1    Porteous, D.J.2    Brookes, A.J.3
  • 23
    • 0032726951 scopus 로고    scopus 로고
    • Leukaemia disease genes: Large-scale cloning and pathway predictions
    • Li J, Shen H, Himmel KL, Dupuy AJ, Largaespada DA, et al. (1999) Leukaemia disease genes: Large-scale cloning and pathway predictions. Nat Genet 23: 348-353.
    • (1999) Nat Genet , vol.23 , pp. 348-353
    • Li, J.1    Shen, H.2    Himmel, K.L.3    Dupuy, A.J.4    Largaespada, D.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.