Isolation of DNA for sequence analysis from herbarium material of some lichen specimens

Turkish Journal of Botany

Volumn 30, Issue 6, 2006, Pages 449-453

  Aras, Sümer ^a   Cansaran, Demet ^a  

^a ANKARA UNIVERSITY   (Turkey)

Author keywords

DNA isolation; Herbarium material; Lichen; Sequence analysis

Indexed keywords

DNA; HERBARIUM; LICHEN;

EID: 33845772257     PISSN: 1300008X     EISSN: 13036106     Source Type: Journal    
DOI: None     Document Type: Article

References (27)

1. Aras S. Duran A & Yenilmez G (2003). Isolation of DNA for RAPD analysis from dry leaf material of some Hesperis L. specimens. Plant Mol Biol Rep 21: 461a-461f.
2. Armaleo D & Clerc P (1991). Lichen chimeras: DNA analyses suggest that one fungus forms two morphotypes. Exp Mycol 15: 1-10.
3. Armaleo D & Clerc P (1995). A rapid and inexpensive method for the purification of DNA from lichens and their symbionts. Lichenologist 27: 207-213.
4. Bridge PD, Arora DK, Reddy CA & Elander RP (1998). Applications of PCR in Mycology. New York: CABI, pp. 85-105.
5. Bruns TD, Fogel R & Taylor JW (1990). Amplification and sequencing of DNA from fungal herbarium specimens. Mycologia 82: 175-184.
6. Crespo A, Bridge PD & Hawksworth DL (1997). Amplification of fungal rDNA-ITS regions from non-fertile specimens of the lichen-forming genus Parmelia. Lichen 29: 275-282.
7. Cubero OF, Crespo A, Fatehi J & Bridge PD (1999). DNA extraction and PCR amplification method suitable for fresh, herbarium-stored, lichenized, and other fungi. Plant Syst Evol 216: 243-249.
8. DePriest PT (1993). Small subunit rDNA variation in a population of lichen fungi due to optional group-I introns. Gene 134: 67-74.
9. Doyle JJ & Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
10. Gardes M & Bruns TD (1993). ITS primers with enhanced specificity for Basidiomycetes - application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113-118.
11. Gargas A, DePriest PT, Grube M & Tehler A (1995). Multiple origins of lichen symbioses in fungi suggested by SSU rDNA phylogeny. Science 268: 1492-1495.
12. Grube M, DePriest PT, Gargas A & Hafellner J (1995). DNA isolation from lichen ascomata. Mycol Res 99: 1321-1324.
13. Grube M & Kroken S (2000). Molecular approaches and the concept of species and species complexes in lichenized fungi. Mycol Res 104: 1284-1294.
14. Grube M (2005). Nucleic acid isolation from ecological samples-fungal associations, lichens. Method Enzymol 395: 48-57.
15. Hawksworth DL & Honegger R (1994). The lichen thallus a symbiotic phenotype of nutritionally specialized fungi and its response to gall producers. In: Williams MAJ (Ed.). Plant Galls. Clarendon Press, Oxford, pp: 77-98.
16. Högberg N, Kroken S, Thor G & Taylor JW (2002). Reproductive mode and genetic variation suggest a North American origin of European Letharia vulpine. Mol Ecol 11: 1191-1196.
17. Kroken S & Taylor JW (2001). Outcrossing and recombination in the lichenized fungus Letharia. Fungal Genet Biol 34: 83-92.
18. Landvik S. Shailer NFJ & Eriksson O (1996). SSU rDNA sequence support for a dose relationship between the Elaphomycetales and the Eurotiales and Onygenales. Mycoscience 37: 237-241.
19. Lee SB, Milgroom MG & Taylor JW (1988). A rapid, high-yield mini-prep method for isolation of total genomic DNA from fungi. Fungal Genet Biol 35: 23-24.
20. Lee SB & Taylor JW (1990). Isolation of DNA from fungal mycelia and single spores. In: Innis M.A., Gelfand D.H., Sninsky J.J., White T.J. (eds) PCR Protocols: a Guide to Methods and Applications. Academic Press, San Diego, pp. 282-287.
21. Lutzoni F, Pagel M & Reeb V (2001). Major fungal lineages are derived from lichen symbiotic ancestors. Nature 411: 937-940.
22. Martin MF & Winka K (2000). Alternative methods of extracting and amplifying DNA from Lichens. Lichenologist 32: 189-196.
23. Murtagh GJ, Dyer PS, McClure PC & Crittenden PD (1999). Use of randomly amplified polymorphic DNA markers as a tool to study variation in lichen-forming fungi. Lichenologist 31: 257-267.
24. Walser JC, Zoller S, Büchler U & Scheidegger C (2001). Species-specific detection of Lobaria pulmonaria (lichenized ascomycete) diasporas in litter samples trapped in snow cover. Mol Ecol 10: 2129-2138.
25. Walser JC, Sperisen C, Soliva M & Scheidegger C (2003). Fungus-specific microsatellite primers: application for the assessment of genetic variation on different spatial scales in Lobaria pulmonaria. Fungal Genet Biol 40: 72-82.
26. White TJ, Bruns TD, Lee S & Taylor J (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols (Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds). New York: Academic Press.
27. Zoller S, Lutzoni F & Scheidegger C (1999). Genetic variation within and among populations of the threatened lichen Lobaria pulmonaria in Switzerland and implications for its conservation. Mol Ecol 8: 2049-2059.